RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 FAM9CQ8IZT9 166 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 MORN4Q8NDC4 146 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 SIMC1Q8NDZ2 872 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 ELP5Q8TE02 316 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 AMDHD1Q96NU7 426 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 NUDT9Q9BW91 350 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 RABEP2Q9H5N1 569 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 CLMPQ9H6B4 373 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 MMP25Q9NPA2 562 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 MAT2BQ9NZL9 334 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 NTSP30990 170 aa20.64■□□□□ 0.89
SHMT1-203ENST00000354098 SOX8P57073 446 aa20.64■□□□□ 0.89
SHMT1-203ENST00000354098 MRPS35P82673 323 aaKnown RBP20.64■□□□□ 0.89
SHMT1-203ENST00000354098 PAOXQ6QHF9 649 aa20.64■□□□□ 0.89
SHMT1-203ENST00000354098 ZNF551Q7Z340 670 aaPredicted RBP20.64■□□□□ 0.89
SHMT1-203ENST00000354098 FDCSPQ8NFU4 85 aa20.64■□□□□ 0.89
SHMT1-203ENST00000354098 OR9I1Q8NGQ6 314 aa20.64■□□□□ 0.89
SHMT1-203ENST00000354098 OR1N1Q8NGS0 311 aa20.64■□□□□ 0.89
SHMT1-203ENST00000354098 PSMF1Q92530 271 aa20.64■□□□□ 0.89
SHMT1-203ENST00000354098 KAT2AQ92830 837 aa20.64■□□□□ 0.89
SHMT1-203ENST00000354098 PRPF18Q99633 342 aaKnown RBP20.64■□□□□ 0.89
SHMT1-203ENST00000354098 ELAC2Q9BQ52 826 aaKnown RBP20.64■□□□□ 0.89
SHMT1-203ENST00000354098 ANKRA2Q9H9E1 313 aa20.64■□□□□ 0.89
SHMT1-203ENST00000354098 COPG1Q9Y678 874 aaKnown RBP20.64■□□□□ 0.89
SHMT1-203ENST00000354098 IGKV3-11P04433 115 aa20.63■□□□□ 0.89
SHMT1-203ENST00000354098 NCF2P19878 526 aaPredicted RBP20.63■□□□□ 0.89
SHMT1-203ENST00000354098 S1PR1P21453 382 aa20.63■□□□□ 0.89
SHMT1-203ENST00000354098 SSTR4P31391 388 aa20.63■□□□□ 0.89
SHMT1-203ENST00000354098 FRKP42685 505 aaPredicted RBP20.63■□□□□ 0.89
SHMT1-203ENST00000354098 PHC1P78364 1004 aa20.63■□□□□ 0.89
SHMT1-203ENST00000354098 MAP4K2Q12851 820 aa20.63■□□□□ 0.89
SHMT1-203ENST00000354098 TRMT12Q53H54 448 aaKnown RBP20.63■□□□□ 0.89
SHMT1-203ENST00000354098 ZNF628Q5EBL2 1059 aa20.63■□□□□ 0.89
SHMT1-203ENST00000354098 CAMKMTQ7Z624 323 aa20.63■□□□□ 0.89
SHMT1-203ENST00000354098 BRIX1Q8TDN6 353 aaKnown RBP20.63■□□□□ 0.89
SHMT1-203ENST00000354098 C10orf82Q8WW14 230 aa20.63■□□□□ 0.89
SHMT1-203ENST00000354098 TESCQ96BS2 214 aa20.63■□□□□ 0.89
SHMT1-203ENST00000354098 FBXL20Q96IG2 436 aa20.63■□□□□ 0.89
SHMT1-203ENST00000354098 DUSP26Q9BV47 211 aa20.63■□□□□ 0.89
SHMT1-203ENST00000354098 LHPPQ9H008 270 aa20.63■□□□□ 0.89
SHMT1-203ENST00000354098 DYRK3O43781 588 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 PRKNO60260 465 aaPredicted RBP20.62■□□□□ 0.89
SHMT1-203ENST00000354098 SLC22A3O75751 556 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 CLPSP04118 112 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 GPX3P22352 226 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 ZFP36L2P47974 494 aaKnown RBP20.62■□□□□ 0.89
SHMT1-203ENST00000354098 POLE2P56282 527 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 SPANXN4Q5MJ08 99 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 OR4F3Q6IEY1 312 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 MIER2Q8N344 545 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 SIRT6Q8N6T7 355 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 TTC9Q92623 222 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 CTHRC1Q96CG8 243 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 VMP1Q96GC9 406 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 SEMA4CQ9C0C4 833 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 BHLHE41Q9C0J9 482 aaPredicted RBP20.62■□□□□ 0.89
SHMT1-203ENST00000354098 ATAD3AQ9NVI7 634 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 ADAM21Q9UKJ8 722 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 MAPRE3Q9UPY8 281 aa20.62■□□□□ 0.89
SHMT1-203ENST00000354098 TRBV11-1A0A0K0K1C0 115 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 A8MUI8 341 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 CEACAM4O75871 244 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 PCSK2P16519 638 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 DGKQP52824 942 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 CLNS1AP54105 237 aaKnown RBP20.61■□□□□ 0.89
SHMT1-203ENST00000354098 MANFP55145 182 aaKnown RBP20.61■□□□□ 0.89
SHMT1-203ENST00000354098 WNT3P56703 355 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 HSPB3Q12988 150 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 FAM174BQ3ZCQ3 159 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 CPLX4Q7Z7G2 160 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 VWA5B2Q8N398 1253 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 GPR83Q9NYM4 423 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 ZIM2Q9NZV7 527 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 ZNF639Q9UID6 485 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 FAM87AP0C7U9 286 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 CD1EP15812 388 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 CLCN2P51788 898 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 STX1BP61266 288 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 SRSF11Q05519 484 aaKnown RBP20.61■□□□□ 0.89
SHMT1-203ENST00000354098 FUT7Q11130 342 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 MYBPC3Q14896 1274 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 EXOSC7Q15024 291 aaKnown RBP20.61■□□□□ 0.89
SHMT1-203ENST00000354098 B3GNTL1Q67FW5 361 aaPredicted RBP20.61■□□□□ 0.89
SHMT1-203ENST00000354098 FCRLBQ6BAA4 426 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 TMEM107Q6UX40 140 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 SPATA21Q7Z572 469 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 OR7G2Q8NG99 324 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 OR8J2Q8NGG1 315 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 ZNF675Q8TD23 568 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 ZBED6CLQ96FA7 236 aaPredicted RBP20.61■□□□□ 0.89
SHMT1-203ENST00000354098 ZNF385DQ9H6B1 395 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 ZNF552Q9H707 407 aaPredicted RBP20.61■□□□□ 0.89
SHMT1-203ENST00000354098 ACSS1Q9NUB1 689 aaPredicted RBP20.61■□□□□ 0.89
SHMT1-203ENST00000354098 PTGFRNQ9P2B2 879 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 COPS7AQ9UBW8 275 aa20.61■□□□□ 0.89
SHMT1-203ENST00000354098 A0A1W2PRB8 838 aa20.6■□□□□ 0.89
SHMT1-203ENST00000354098 MAN1A2O60476 641 aa20.6■□□□□ 0.89
SHMT1-203ENST00000354098 SCN2BO60939 215 aa20.6■□□□□ 0.89
SHMT1-203ENST00000354098 DDX5P17844 614 aaKnown RBP20.6■□□□□ 0.89
SHMT1-203ENST00000354098 KIR3DL1P43629 444 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms