RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 H3BN98 237 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 M0R3H8 397 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 MAN2B1O00754 1011 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 SCAMP1O15126 338 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 ERI3O43414 337 aaKnown RBP20.59■□□□□ 0.89
SHMT1-202ENST00000352886 ERAL1O75616 437 aaKnown RBP20.59■□□□□ 0.89
SHMT1-202ENST00000352886 TEAD1P28347 426 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 PPP2R1BP30154 601 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 NTSP30990 170 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 UGT2B15P54855 530 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 SGCGQ13326 291 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 PIN1Q13526 163 aaPredicted RBP20.59■□□□□ 0.89
SHMT1-202ENST00000352886 GPR19Q15760 415 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 TMEM35AQ53FP2 167 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 SLC7A13Q8TCU3 470 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 DACH2Q96NX9 599 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 BBS4Q96RK4 519 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 CHCHD6Q9BRQ6 235 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 CENPOQ9BU64 300 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 C6orf62Q9GZU0 229 aaPredicted RBP20.59■□□□□ 0.89
SHMT1-202ENST00000352886 BTBD1Q9H0C5 482 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 ACAD8Q9UKU7 415 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 ZNF232Q9UNY5 417 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 GPSM3Q9Y4H4 160 aa20.59■□□□□ 0.89
SHMT1-202ENST00000352886 HAT1O14929 419 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 ENTPD6O75354 484 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 ALPPL2P10696 532 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 EIF2DP41214 584 aaKnown RBP20.58■□□□□ 0.89
SHMT1-202ENST00000352886 SLAMF1Q13291 335 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 ENPP2Q13822 863 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 PLAG1Q6DJT9 500 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 PGBD2Q6P3X8 592 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 HMGN2P46Q86SG4 172 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 TBC1D19Q8N5T2 526 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 WDR36Q8NI36 951 aaKnown RBP20.58■□□□□ 0.89
SHMT1-202ENST00000352886 GANCQ8TET4 914 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 KXD1Q9BQD3 176 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 RAB11FIP5Q9BXF6 653 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 SLC6A20Q9NP91 592 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 ZSCAN32Q9NX65 697 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 PCDHGA3Q9Y5H0 932 aa20.58■□□□□ 0.89
SHMT1-202ENST00000352886 UGT2B17O75795 530 aa20.58■□□□□ 0.88
SHMT1-202ENST00000352886 SLC15A1P46059 708 aa20.58■□□□□ 0.88
SHMT1-202ENST00000352886 HYAL2Q12891 473 aa20.58■□□□□ 0.88
SHMT1-202ENST00000352886 TARDBPQ13148 414 aaKnown RBP eCLIP20.58■□□□□ 0.88
SHMT1-202ENST00000352886 ZIC1Q15915 447 aa20.58■□□□□ 0.88
SHMT1-202ENST00000352886 KRT73Q86Y46 540 aa20.58■□□□□ 0.88
SHMT1-202ENST00000352886 AMER2Q8N7J2 671 aa20.58■□□□□ 0.88
SHMT1-202ENST00000352886 KBTBD8Q8NFY9 601 aa20.58■□□□□ 0.88
SHMT1-202ENST00000352886 MS4A6EQ96DS6 147 aa20.58■□□□□ 0.88
SHMT1-202ENST00000352886 MGLLQ99685 303 aa20.58■□□□□ 0.88
SHMT1-202ENST00000352886 YIPF4Q9BSR8 244 aa20.58■□□□□ 0.88
SHMT1-202ENST00000352886 POLR2J3Q9H1A7 115 aaKnown RBP20.58■□□□□ 0.88
SHMT1-202ENST00000352886 A4GNTQ9UNA3 340 aa20.58■□□□□ 0.88
SHMT1-202ENST00000352886 CACNB4O00305 520 aaPredicted RBP20.57■□□□□ 0.88
SHMT1-202ENST00000352886 DSCR3O14972 297 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 CD97P48960 835 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 XKP51811 444 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 PPP5CP53041 499 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 SEC13P55735 322 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 RPS21P63220 83 aaKnown RBP20.57■□□□□ 0.88
SHMT1-202ENST00000352886 SLX4IPQ5VYV7 408 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 FBXL6Q8N531 539 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 IGFLR1Q9H665 355 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 MVB12BQ9H7P6 319 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 ATG4BQ9Y4P1 393 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 KRBA1A5PL33 1030 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 PGRMC2O15173 223 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 TPST2O60704 377 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 HIST1H1TP22492 207 aaPredicted RBP20.57■□□□□ 0.88
SHMT1-202ENST00000352886 DNASE1L3Q13609 305 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 ZNF750Q32MQ0 723 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 NUDT18Q6ZVK8 323 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 ACOT4Q8N9L9 421 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 OR14C36Q8NHC7 312 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 NEURL2Q9BR09 285 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 FUZQ9BT04 418 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 C1QTNF2Q9BXJ5 285 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 SLC25A19Q9HC21 320 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 FZD3Q9NPG1 666 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 FBXL12Q9NXK8 326 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 DNAJC27Q9NZQ0 273 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 SLC17A4Q9Y2C5 497 aa20.57■□□□□ 0.88
SHMT1-202ENST00000352886 A0A1W2PQU0 124 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 A0A1W2PR48 441 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 PORP16435 677 aaPredicted RBP20.56■□□□□ 0.88
SHMT1-202ENST00000352886 TGM1P22735 817 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 TIE1P35590 1138 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 SOX9P48436 509 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 KHKP50053 298 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 LIMK1P53667 647 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 SMIM11AP58511 58 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 SNRPGP62308 76 aaKnown RBP20.56■□□□□ 0.88
SHMT1-202ENST00000352886 LASP1Q14847 261 aaKnown RBP20.56■□□□□ 0.88
SHMT1-202ENST00000352886 TSTQ16762 297 aaKnown RBP20.56■□□□□ 0.88
SHMT1-202ENST00000352886 TMEM145Q8NBT3 493 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 PRDM7Q9NQW5 492 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 NDOR1Q9UHB4 597 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 ASB4Q9Y574 426 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 KLK4Q9Y5K2 254 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms