RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 HMGN2P05204 90 aaKnown RBP9.78□□□□□ -0.84
LIMA1-201ENST00000341247 PEBP1P30086 187 aaKnown RBP9.78□□□□□ -0.84
LIMA1-201ENST00000341247 TGFBR2P37173 567 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 RXRGP48443 463 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 CRISP1P54107 249 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 LTB4RQ15722 352 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 INAQ16352 499 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 RPE65Q16518 533 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 DGUOKQ16854 277 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 TPRG1LQ5T0D9 272 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 FRMPD2BQ6IN97 320 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 ANKRD54Q6NXT1 300 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 TMEFF1Q8IYR6 380 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 FLCNQ8NFG4 579 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 OR10G6Q8NH81 332 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 MYDGFQ969H8 173 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 ZG16BQ96DA0 208 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 DCSTAMPQ9H295 470 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 C6orf106Q9H6K1 298 aaPredicted RBP9.78□□□□□ -0.84
LIMA1-201ENST00000341247 CACNB4O00305 520 aaPredicted RBP9.78□□□□□ -0.84
LIMA1-201ENST00000341247 KLF8O95600 359 aaPredicted RBP9.78□□□□□ -0.84
LIMA1-201ENST00000341247 CDK1P06493 297 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 HOXB2P14652 356 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 MAGP20916 626 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 CBLP22681 906 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 NTSP30990 170 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 HSD17B2P37059 387 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 ADPRHP54922 357 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 BTN3A2P78410 334 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 ID2Q02363 134 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 MDC1Q14676 2089 aaKnown RBP9.78□□□□□ -0.84
LIMA1-201ENST00000341247 ARMCX4Q5H9R4 360 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 TJAP1Q5JTD0 557 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 KIAA1324Q6UXG2 1013 aaKnown RBP9.78□□□□□ -0.84
LIMA1-201ENST00000341247 Q6ZNX1 250 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 OR2L3Q8NG85 312 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 LCN9Q8WX39 176 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 MS4A6EQ96DS6 147 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 CNRIP1Q96F85 164 aaPredicted RBP9.78□□□□□ -0.84
LIMA1-201ENST00000341247 DAPK2Q9UIK4 370 aa9.78□□□□□ -0.84
LIMA1-201ENST00000341247 A0A0A6YYD5 115 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF860A6NHJ4 632 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 AIFM1O95831 613 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 H1F0P07305 194 aaKnown RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 ADORA3P0DMS8 318 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 ELAVL4P26378 380 aaKnown RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 PKLRP30613 574 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 OLR1P78380 273 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 ATAT1Q5SQI0 421 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 DCDC5Q6ZRR9 648 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 DRAXINQ8NBI3 349 aaPredicted RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 OR9A2Q8NGT5 310 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 WDR36Q8NI36 951 aaKnown RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 SLC7A13Q8TCU3 470 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 ARSGQ96EG1 525 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 DDX31Q9H8H2 851 aaKnown RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 GMEB1Q9Y692 573 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 PNMA8CA0A1B0GUJ8 204 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 ENTPD6O75354 484 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 RASGRP1O95267 797 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 EGFP01133 1207 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 ASGR2P07307 311 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 BMP4P12644 408 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 LAMP2P13473 410 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 MC3RP41968 323 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 KIR2DL1P43626 348 aaPredicted RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 DNASE1L3Q13609 305 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 KIAA1161Q6NSJ0 714 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 SFTPA2Q8IWL1 248 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 DEPDC4Q8N2C3 294 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 SIMC1Q8NDZ2 872 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 TRUB1Q8WWH5 349 aaKnown RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 SLC38A4Q969I6 547 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF607Q96SK3 696 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 C1QTNF2Q9BXJ5 285 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 TVP23BQ9NYZ1 205 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 P2RX2Q9UBL9 471 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 APOBEC3BQ9UH17 382 aaKnown RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 CLEC3AO75596 197 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 EIF2S1P05198 315 aaKnown RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 CHRM4P08173 479 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 HIST1H1TP22492 207 aaPredicted RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 ACVR2AP27037 513 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 ACTR1BP42025 376 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 ACTR1AP61163 376 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 MLLT1Q03111 559 aaPredicted RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 DOC2BQ14184 412 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 RGS21Q2M5E4 152 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 ZNF542PQ5EBM4 170 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 TCEANCQ8N8B7 351 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 OR6T1Q8NGN1 323 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 MCFD2Q8NI22 146 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 PATE1Q8WXA2 126 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 OR1E3Q8WZA6 343 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 Q96MT0 163 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 MAPKAP1Q9BPZ7 522 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 FAIM2Q9BWQ8 316 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 POLR2J3Q9H1A7 115 aaKnown RBP9.77□□□□□ -0.85
LIMA1-201ENST00000341247 MIR1-1HGQ9H1L0 117 aa9.77□□□□□ -0.85
LIMA1-201ENST00000341247 A4GALTQ9NPC4 353 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms