RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 DNAJC22Q8N4W6 341 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 OXR1Q8N573 874 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 VN1R2Q8NFZ6 395 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 OR4F15Q8NGB8 312 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 IPCEF1Q8WWN9 437 aaPredicted RBP11.34□□□□□ -0.59
USP1-201ENST00000339950 LGR4Q9BXB1 951 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 TEX12Q9BXU0 123 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 DMRT3Q9NQL9 472 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 STARD5Q9NSY2 213 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 PLXNB2O15031 1838 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 TRAV6A0A075B6T7 132 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 SMLR1H3BR10 107 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 PLD2O14939 933 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 GUCY1B2O75343 617 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 GRPRP30550 384 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 ITGA1P56199 1179 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 SLAMF1Q13291 335 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 OXA1LQ15070 435 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 FIGNL1Q6PIW4 674 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 SLCO4C1Q6ZQN7 724 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 CPA6Q8N4T0 437 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 GATSQ8NAP1 163 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 DPH7Q9BTV6 452 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 ELAC1Q9H777 363 aaKnown RBP11.34□□□□□ -0.59
USP1-201ENST00000339950 NECTIN3Q9NQS3 549 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 TRPM6Q9BX84 2022 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 TRIOBPQ9H2D6 2365 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 ZC3H12DA2A288 527 aaKnown RBP11.34□□□□□ -0.59
USP1-201ENST00000339950 PRRT4C9JH25 899 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 TYRP1P17643 537 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 PPM1AP35813 382 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 GGT2P36268 569 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 ACVR1BP36896 505 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 WNT3P56703 355 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 RACK1P63244 317 aaKnown RBP11.34□□□□□ -0.59
USP1-201ENST00000339950 KCNJ10P78508 379 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 ZNF267Q14586 743 aaPredicted RBP11.34□□□□□ -0.59
USP1-201ENST00000339950 C6orf132Q5T0Z8 1188 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 ZNF544Q6NX49 715 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 ZNF517Q6ZMY9 492 aaPredicted RBP11.34□□□□□ -0.59
USP1-201ENST00000339950 ZBED6CLQ96FA7 236 aaPredicted RBP11.34□□□□□ -0.59
USP1-201ENST00000339950 UGT2A1Q9Y4X1 527 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 ENPP4Q9Y6X5 453 aa11.34□□□□□ -0.59
USP1-201ENST00000339950 SAGE2PA6NJ88 616 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 FAM171A2A8MVW0 826 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 GABARAPO95166 117 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 CLTBP09497 229 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 PTX3P26022 381 aaPredicted RBP11.33□□□□□ -0.6
USP1-201ENST00000339950 TNFSF8P32971 234 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 ACTR1BP42025 376 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 RAB15P59190 212 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 ACTR1AP61163 376 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 ZMYND11Q15326 602 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 LTB4RQ15722 352 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 FAM26DQ5JW98 314 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 NDUFAF5Q5TEU4 345 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 SLC39A5Q6ZMH5 540 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 RHOXF1Q8NHV9 184 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 ZFPM2Q8WW38 1151 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 LCN9Q8WX39 176 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 KXD1Q9BQD3 176 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 CCDC3Q9BQI4 270 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 C1QTNF3Q9BXJ4 246 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 MROQ9BYG7 248 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 SYNDIG1Q9H7V2 258 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 PEX16Q9Y5Y5 336 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 A0A1W2PQL4 384 aaPredicted RBP11.33□□□□□ -0.6
USP1-201ENST00000339950 GPX2P18283 190 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 OTPQ5XKR4 325 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 GRHL2Q6ISB3 625 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 CNKSR3Q6P9H4 555 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 PHC2Q8IXK0 858 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 TESCQ96BS2 214 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 DOK1Q99704 481 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 MVB12BQ9H7P6 319 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 NLKQ9UBE8 527 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 CRNNQ9UBG3 495 aaPredicted RBP11.33□□□□□ -0.6
USP1-201ENST00000339950 ABHD14A-ACY1A0A1B0GW23 586 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 MAGEB4O15481 346 aaPredicted RBP11.33□□□□□ -0.6
USP1-201ENST00000339950 ZNF821O75541 412 aaPredicted RBP11.33□□□□□ -0.6
USP1-201ENST00000339950 TOXO94900 526 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 ADH1CP00326 375 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 HMGN2P05204 90 aaKnown RBP11.33□□□□□ -0.6
USP1-201ENST00000339950 FUT1P19526 365 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 CERS1P27544 350 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 DEFB110Q30KQ9 67 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 C18orf63Q68DL7 685 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 VRK2Q86Y07 508 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 TRAM1L1Q8N609 369 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 FAM46DQ8NEK8 389 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 OR52N2Q8NGI0 321 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 ZNF671Q8TAW3 534 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 LRRC20Q8TCA0 184 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 FKBP10Q96AY3 582 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 C11orf24Q96F05 449 aaPredicted RBP11.33□□□□□ -0.6
USP1-201ENST00000339950 CCDC115Q96NT0 180 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 MAGIXQ9H6Y5 334 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 NLGN3Q9NZ94 848 aa11.33□□□□□ -0.6
USP1-201ENST00000339950 AGAP5A6NIR3 686 aa11.32□□□□□ -0.6
USP1-201ENST00000339950 MEN1O00255 615 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms