RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CSAG2Q9Y5P2 127 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 CFAP46Q8IYW2 2715 aa14.78□□□□□ -0.04
CCDC28A-201ENST00000332797 TRPC5OSA6NMA1 111 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 GABRR3A8MPY1 467 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 SLCO1B7G3V0H7 640 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 SDHDO14521 159 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 VPS4BO75351 444 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 WDPCPO95876 746 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 IGKV3-11P04433 115 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 PRPS2P11908 318 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 SSTR4P31391 388 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 HPCAL1P37235 193 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 EMX2Q04743 252 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 PTGR1Q14914 329 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 LTB4RQ15722 352 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 ANKRD26P1Q6NSI1 321 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 RNF111Q6ZNA4 994 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 CCDC116Q8IYX3 515 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 LGI4Q8N135 537 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 CKAP2Q8WWK9 683 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 MAGEB18Q96M61 343 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 REEP4Q9H6H4 257 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 LIN28AQ9H9Z2 209 aaKnown RBP14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 NOP53Q9NZM5 478 aaKnown RBP14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 LUZP4Q9P127 313 aa14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 HEMK1Q9Y5R4 338 aaPredicted RBP14.77□□□□□ -0.04
CCDC28A-201ENST00000332797 GOLGA8QA0A0J9YX86 632 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 GOLGA8OA6NCC3 632 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 GOLGA8NF8WBI6 632 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 FCHO1O14526 889 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 G6PDP11413 515 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 EPHA3P29320 983 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 NTSP30990 170 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 MLF1P58340 268 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 RNF4P78317 190 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 SMU1Q2TAY7 513 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 PRICKLE4Q2TBC4 344 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 SLC6A19Q695T7 634 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 FAM111BQ6SJ93 734 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 FAM47EQ6ZV65 393 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 C9orf40Q8IXQ3 194 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 VWA5B2Q8N398 1253 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 OR9A2Q8NGT5 310 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 PPCDCQ96CD2 204 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 RNF32Q9H0A6 362 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 WDR55Q9H6Y2 383 aaPredicted RBP14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 ANKRD10Q9NXR5 420 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 MAT2BQ9NZL9 334 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 MYO1GB0I1T2 1018 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 SCAMP2O15127 329 aaKnown RBP14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 PDPK1O15530 556 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 CLPSP04118 112 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 LBPP18428 481 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 MPIP34949 423 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 NCBP2P52298 156 aaKnown RBP eCLIP14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 SLC37A1P57057 533 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 FUT7Q11130 342 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 CEBPEQ15744 281 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 ZNF385BQ569K4 471 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 C16orf47Q6ZP98 133 aaPredicted RBP14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 LARP4Q71RC2 724 aaKnown RBP eCLIP14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 SLC29A4Q7RTT9 530 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 MAVSQ7Z434 540 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 FAM9CQ8IZT9 166 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 ARFGAP2Q8N6H7 521 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 CATSPER1Q8NEC5 780 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 OR8K3Q8NH51 312 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 SUN3Q8TAQ9 357 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 HAS2Q92819 552 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 PNPLA2Q96AD5 504 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 GAL3ST4Q96RP7 486 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 UTP23Q9BRU9 249 aaKnown RBP14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 ASIC5Q9NY37 505 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 TAS2R7Q9NYW3 318 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 SH3BP4Q9P0V3 963 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 ANAPC2Q9UJX6 822 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 B3GNT3Q9Y2A9 372 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 USH1CQ9Y6N9 552 aa14.76□□□□□ -0.05
CCDC28A-201ENST00000332797 OR5H15A6NDH6 313 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 TMEM200CA6NKL6 621 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 B8ZZF3 427 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 WWP2O00308 870 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 ITGA10O75578 1167 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 PCSK2P16519 638 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 CASRP41180 1078 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 DIO3P55073 304 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 MRPS35P82673 323 aaKnown RBP14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 OC90Q02509 493 aaPredicted RBP14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 MGAT2Q10469 447 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 MAP4K2Q12851 820 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 TUBA3CQ13748 450 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 PDE7AQ13946 482 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 EXOSC7Q15024 291 aaKnown RBP14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 PLEKHN1Q494U1 663 aaPredicted RBP14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 SLC9B1Q4ZJI4 515 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 ZNF628Q5EBL2 1059 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 NXNQ6DKJ4 435 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 TUBA3EQ6PEY2 450 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms