RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 SIGLEC12Q96PQ1 595 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 LIN28AQ9H9Z2 209 aaKnown RBP13.01□□□□□ -0.33
LIMS1-201ENST00000332345 ASF1BQ9NVP2 202 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 HEY2Q9UBP5 337 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 POLR3HQ9Y535 204 aaPredicted RBP13.01□□□□□ -0.33
LIMS1-201ENST00000332345 PTGDR2Q9Y5Y4 395 aa13.01□□□□□ -0.33
LIMS1-201ENST00000332345 TMEM233B4DJY2 109 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 HRKO00198 91 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 PIP5K1BO14986 540 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 NEURL1O76050 574 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 CRYABP02511 175 aaKnown RBP13□□□□□ -0.33
LIMS1-201ENST00000332345 ATP1B1P05026 303 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 ARRB2P32121 409 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 MPIP34949 423 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 ST13P50502 369 aaKnown RBP13□□□□□ -0.33
LIMS1-201ENST00000332345 SLC37A1P57057 533 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 FUT7Q11130 342 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 MAPKAPK3Q16644 382 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 MPEG1Q2M385 716 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 ZNF750Q32MQ0 723 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 PRR30Q53SZ7 412 aaPredicted RBP13□□□□□ -0.33
LIMS1-201ENST00000332345 PIGGQ5H8A4 983 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 ZNF468Q5VIY5 522 aaPredicted RBP13□□□□□ -0.33
LIMS1-201ENST00000332345 FAM71E1Q6IPT2 247 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 IKBIPQ70UQ0 350 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 CCDC116Q8IYX3 515 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 LRRC25Q8N386 305 aaPredicted RBP13□□□□□ -0.33
LIMS1-201ENST00000332345 SLC15A4Q8N697 577 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 GOLGA6L1Q8N7Z2 621 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 BCORP1Q8N888 145 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 DNAJB8Q8NHS0 232 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 CDC26Q8NHZ8 85 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 PUM2Q8TB72 1066 aaKnown RBP eCLIP13□□□□□ -0.33
LIMS1-201ENST00000332345 GRHL3Q8TE85 626 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 DOK4Q8TEW6 326 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 FAR1Q8WVX9 515 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 ASB15Q8WXK1 588 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 ZNF681Q96N22 645 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 BARD1Q99728 777 aaKnown RBP13□□□□□ -0.33
LIMS1-201ENST00000332345 VIPAS39Q9H9C1 493 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 MYNNQ9NPC7 610 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 MIEF1Q9NQG6 463 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 SLC35C2Q9NQQ7 365 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 KLHL1Q9NR64 748 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 ERVK-11Q9UQG0 969 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 ENTPD4Q9Y227 616 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 RAP2CQ9Y3L5 183 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 HELZ2Q9BYK8 2649 aaKnown RBP13□□□□□ -0.33
LIMS1-201ENST00000332345 SHANK1Q9Y566 2161 aa13□□□□□ -0.33
LIMS1-201ENST00000332345 A0A1W2PS29 197 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 A8MVJ9 347 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 PYCARD-AS1I3L0S3 204 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 LSM1O15116 133 aaKnown RBP12.99□□□□□ -0.33
LIMS1-201ENST00000332345 ITM2AO43736 263 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 SLC25A12O75746 678 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 BCAS2O75934 225 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-201ENST00000332345 H2AFXP16104 143 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-201ENST00000332345 BGNP21810 368 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 MAPK1P28482 360 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 RPL14P50914 215 aaKnown RBP12.99□□□□□ -0.33
LIMS1-201ENST00000332345 PRICKLE4Q2TBC4 344 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 GALNTL6Q49A17 601 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 ATP6AP1LQ52LC2 224 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 RFTN2Q52LD8 501 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-201ENST00000332345 HLA-DQA1Q5Y7H0 255 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 OPN5Q6U736 354 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 IL20RBQ6UXL0 311 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 C16orf47Q6ZP98 133 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-201ENST00000332345 TRIM42Q8IWZ5 723 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 C9orf40Q8IXQ3 194 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 CYP4Z2PQ8N1L4 340 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 VWA5B2Q8N398 1253 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 FAM98AQ8NCA5 519 aaKnown RBP12.99□□□□□ -0.33
LIMS1-201ENST00000332345 OR2T11Q8NH01 316 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 SLC22A8Q8TCC7 542 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 MGARPQ8TDB4 240 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 EXOSC8Q96B26 276 aaKnown RBP12.99□□□□□ -0.33
LIMS1-201ENST00000332345 CNRIP1Q96F85 164 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-201ENST00000332345 SCMH1Q96GD3 660 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 BBS4Q96RK4 519 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 RASL10BQ96S79 203 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 BRINP2Q9C0B6 783 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 OR10A5Q9H207 317 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 HPF1Q9NWY4 346 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 TAS2R7Q9NYW3 318 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 CFL2Q9Y281 166 aa12.99□□□□□ -0.33
LIMS1-201ENST00000332345 SVILO95425 2214 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 ESPL1Q14674 2120 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 C2orf92A0A1B0GVN3 265 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 KLRC4-KLRK1H3BQV0 150 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 PEX11AO75192 247 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 LYPLA1O75608 230 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-201ENST00000332345 CT62P0C5K7 136 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 SSTR4P31391 388 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 ASMTP46597 345 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 WDR4P57081 412 aaKnown RBP12.98□□□□□ -0.33
LIMS1-201ENST00000332345 RPL38P63173 70 aaKnown RBP12.98□□□□□ -0.33
LIMS1-201ENST00000332345 XKR7Q5GH72 579 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 CES4AQ5XG92 561 aa12.98□□□□□ -0.33
LIMS1-201ENST00000332345 ATG16L1Q676U5 607 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms