RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 NSFP46459 744 aaKnown RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 PGFP49763 221 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 ATP4BP51164 291 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 GEMP55040 296 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 RPL27P61353 136 aaKnown RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 RPS27AP62979 156 aaKnown RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 IL1RL1Q01638 556 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 CBX3Q13185 183 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 SLC17A1Q14916 467 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 KRT31Q15323 416 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 SIX1Q15475 284 aaPredicted RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 WSCD2Q2TBF2 565 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 TTC31Q49AM3 519 aaPredicted RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 PARP10Q53GL7 1025 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 ETFRF1Q6IPR1 90 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 ZNF841Q6ZN19 808 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 CATSPER4Q7RTX7 472 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 NUFIP2Q7Z417 695 aaKnown RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 RPAINQ86UA6 219 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 SLC47A2Q86VL8 602 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 ERC1Q8IUD2 1116 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 TEX9Q8N6V9 391 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 ZNF781Q8N8C0 355 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 C4orf32Q8N8J7 132 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 RTL3Q8N8U3 475 aaKnown RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 ICA1LQ8NDH6 482 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 BEST4Q8NFU0 473 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 OR4L1Q8NH43 312 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 OR4A16Q8NH70 328 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 FAM222BQ8WU58 562 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 MRPL24Q96A35 216 aaKnown RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 ESAMQ96AP7 390 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 RPGRIP1Q96KN7 1286 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 RUNDC3BQ96NL0 473 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 TMEM237Q96Q45 408 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 SOSTQ9BQB4 213 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 TRPV6Q9H1D0 765 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 SLC26A1Q9H2B4 701 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 DCLRE1BQ9H816 532 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 PIGVQ9NUD9 493 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 DDX28Q9NUL7 540 aaKnown RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 AKAP7Q9P0M2 348 aaPredicted RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 MOSPD1Q9UJG1 213 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 TSPAN16Q9UKR8 245 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 MGAT4AQ9UM21 535 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 SPATA2Q9UM82 520 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 TDRKHQ9Y2W6 561 aaKnown RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 CHD4Q14839 1912 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 ABCA9Q8IUA7 1624 aa2.71□□□□□ -1.98
HMGB1-201ENST00000326004 COL5A2P05997 1499 aaPredicted RBP2.71□□□□□ -1.98
HMGB1-201ENST00000326004 AGRNO00468 2067 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 ACOD1A6NK06 481 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 YJEFN3A6XGL0 299 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 ZNF724A8MTY0 619 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 EEF2KO00418 725 aaKnown RBP2.7□□□□□ -1.98
HMGB1-201ENST00000326004 TXNL1O43396 289 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 ZBTB14O43829 449 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 CRLF1O75462 422 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 FRAT2O75474 233 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-201ENST00000326004 ANXA9O76027 345 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 OR6B1O95007 311 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 CALCAP01258 141 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 SLC4A1P02730 911 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 ABHD2P08910 425 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 HOXD4P09016 255 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-201ENST00000326004 NT5C2P49902 561 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 KRTAP10-6P60371 365 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-201ENST00000326004 CCZ1BP86790 482 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 CCZ1P86791 482 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-201ENST00000326004 ACY1Q03154 408 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 CD300CQ08708 224 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 P2RY14Q15391 338 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 TRADDQ15628 312 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 HFEQ30201 348 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 NKAIN2Q5VXU1 208 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 RTL6Q6ICC9 239 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 ITIH5Q86UX2 942 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 WDR49Q8IV35 697 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 HSCBQ8IWL3 235 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 PEX5LQ8IYB4 626 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 POM121L12Q8N7R1 296 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 CSNK1G2-AS1Q8NCQ2 148 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 CXorf58Q96LI9 332 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 GPR137Q96N19 417 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 PRAM1Q96QH2 718 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 DCTN5Q9BTE1 182 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 CCDC28BQ9BUN5 200 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 FUNDC2Q9BWH2 189 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 TEX13AQ9BXU3 409 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-201ENST00000326004 DPEP3Q9H4B8 488 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 THAP9Q9H5L6 903 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 GNB4Q9HAV0 340 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 KCNMB3Q9NPA1 279 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 FAM212BQ9NTI7 297 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-201ENST00000326004 VPS54Q9P1Q0 977 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 TRIM10Q9UDY6 481 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 NARFQ9UHQ1 456 aa2.7□□□□□ -1.98
HMGB1-201ENST00000326004 TRMT6Q9UJA5 497 aaKnown RBP2.7□□□□□ -1.98
HMGB1-201ENST00000326004 COL16A1Q07092 1604 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-201ENST00000326004 TMEM94Q12767 1356 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms