RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 DUX4L3P0CJ86 424 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 DUX4L4P0CJ87 422 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 DUX4L5P0CJ88 424 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 DUX4L6P0CJ89 424 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 DUX4L7P0CJ90 424 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 ARSBP15848 533 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 DNASE1P24855 282 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 GNPDA1P46926 289 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 HTR6P50406 440 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 ATP13A5Q4VNC0 1218 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 CRTC2Q53ET0 693 aaPredicted RBP10.38□□□□□ -0.75
LSM3-201ENST00000306024 USP39Q53GS9 565 aaKnown RBP10.38□□□□□ -0.75
LSM3-201ENST00000306024 LIPKQ5VXJ0 399 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 USP30Q70CQ3 517 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 CNTN4Q8IWV2 1026 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 PIAS4Q8N2W9 510 aaPredicted RBP10.38□□□□□ -0.75
LSM3-201ENST00000306024 DPP10Q8N608 796 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 GPR26Q8NDV2 337 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 OR8K5Q8NH50 307 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 RBPMSQ93062 196 aaKnown RBP10.38□□□□□ -0.75
LSM3-201ENST00000306024 RNFT2Q96EX2 444 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 ERMAPQ96PL5 475 aaPredicted RBP10.38□□□□□ -0.75
LSM3-201ENST00000306024 DCLRE1CQ96SD1 692 aaKnown RBP10.38□□□□□ -0.75
LSM3-201ENST00000306024 AARSD1Q9BTE6 412 aaKnown RBP10.38□□□□□ -0.75
LSM3-201ENST00000306024 TRAF4Q9BUZ4 470 aaPredicted RBP10.38□□□□□ -0.75
LSM3-201ENST00000306024 DUX4Q9UBX2 424 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 PSORS1C1Q9UIG5 152 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 PCDHGB3Q9Y5G1 929 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 NOTCH4Q99466 2003 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 GFRA2O00451 464 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 PRSS23O95084 383 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 C5AR1P21730 350 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 HLA-DMAP28067 261 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 CD6P30203 668 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 GRK5P34947 590 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 TNFRSF4P43489 277 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 TEKQ02763 1124 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 IHHQ14623 411 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 GRK1Q15835 563 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 BCL2L15Q5TBC7 163 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 DLEU7Q6UYE1 221 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 CYHR1Q6ZMK1 362 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 RFLNAQ6ZTI6 216 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 DNAJC22Q8N4W6 341 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 RAB7BQ96AH8 199 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 CHIAQ9BZP6 476 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.38□□□□□ -0.75
LSM3-201ENST00000306024 LMAN1LQ9HAT1 526 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 LRTM1Q9HBL6 345 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 PHPT1Q9NRX4 125 aaPredicted RBP10.38□□□□□ -0.75
LSM3-201ENST00000306024 PLCL2Q9UPR0 1127 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 KLK4Q9Y5K2 254 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 A0A075B6Q4 140 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 NARSO43776 548 aaKnown RBP10.38□□□□□ -0.75
LSM3-201ENST00000306024 C6P13671 934 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 RPS19P39019 145 aaKnown RBP10.38□□□□□ -0.75
LSM3-201ENST00000306024 KIR2DL3P43628 341 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 CBX5P45973 191 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 ASAH1Q13510 395 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 AANATQ16613 207 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 SLC35F1Q5T1Q4 408 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 C9orf64Q5T6V5 341 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 C22orf42Q6IC83 251 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 MZT2AQ6P582 158 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 HSD11B1LQ7Z5J1 315 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 KRTCAP2Q8N6L1 136 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 TMIEQ8NEW7 156 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 OR52B6Q8NGF0 335 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 ARRDC3Q96B67 414 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 MSLNLQ96KJ4 702 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 UBXN10Q96LJ8 280 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 ZNF416Q9BWM5 594 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 RBCK1Q9BYM8 510 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 BTBD1Q9H0C5 482 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 OR2AG1Q9H205 316 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 IFT22Q9H7X7 185 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 C11orf16Q9NQ32 467 aa10.38□□□□□ -0.75
LSM3-201ENST00000306024 RANBP2P49792 3224 aaKnown RBP10.38□□□□□ -0.75
LSM3-201ENST00000306024 IGLON5A6NGN9 336 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 CHURC1-FNTBB4DL54 471 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 H7C2Y5 167 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 OTCP00480 354 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 FOSL1P15407 271 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 CSTF2P33240 577 aaKnown RBP eCLIP10.37□□□□□ -0.75
LSM3-201ENST00000306024 TGM4P49221 684 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 GDI2P50395 445 aaKnown RBP10.37□□□□□ -0.75
LSM3-201ENST00000306024 LRRC32Q14392 662 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 TMEM220Q6QAJ8 160 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 RGL4Q8IZJ4 473 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 MAFAQ8NHW3 353 aaPredicted RBP10.37□□□□□ -0.75
LSM3-201ENST00000306024 MRGPRX3Q96LB0 322 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 KCTD7Q96MP8 289 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 FEVQ99581 238 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 CCM2Q9BSQ5 444 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 HRH3Q9Y5N1 445 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 SPIN1Q9Y657 262 aaPredicted RBP10.37□□□□□ -0.75
LSM3-201ENST00000306024 PLXNA3P51805 1871 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 QSOX1O00391 747 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 SCAMP1O15126 338 aa10.37□□□□□ -0.75
LSM3-201ENST00000306024 ZNF806P0C7X5 589 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms