RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 LRRN3Q9H3W5 708 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 ARNT2Q9HBZ2 717 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 SLC39A1Q9NY26 324 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 MGAT4CQ9UBM8 478 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 TBX21Q9UL17 535 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 MAFFQ9ULX9 164 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 A0A0X1KG70 313 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 A0A1W2PRQ8 180 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 H2AFB2P0C5Z0 115 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 ATP1B2P14415 290 aaPredicted RBP14.65□□□□□ -0.06
SHH-201ENST00000297261 HRH2P25021 359 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 TGFBR1P36897 503 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 EIF2DP41214 584 aaKnown RBP14.65□□□□□ -0.06
SHH-201ENST00000297261 KHKP50053 298 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 OR12D2P58182 307 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 NKX3-2P78367 333 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 SNTA1Q13424 505 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 LRRC37A5PQ49AS3 106 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 RANBP3LQ86VV4 465 aaPredicted RBP14.65□□□□□ -0.06
SHH-201ENST00000297261 S100A13Q99584 98 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 SCAMP1O15126 338 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 SCN2BO60939 215 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 SOCS5O75159 536 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 ABLIM3O94929 683 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 HMGA1P17096 107 aaKnown RBP14.65□□□□□ -0.06
SHH-201ENST00000297261 SSTR2P30874 369 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 PRKCDQ05655 676 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 PTGES3Q15185 160 aaKnown RBP14.65□□□□□ -0.06
SHH-201ENST00000297261 GPR68Q15743 365 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 PLCZ1Q86YW0 608 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 ZNF615Q8N8J6 731 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 COQ8BQ96D53 544 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 OR4K3Q96R72 315 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 RIOK2Q9BVS4 552 aaKnown RBP14.65□□□□□ -0.06
SHH-201ENST00000297261 SLC46A2Q9BY10 475 aa14.65□□□□□ -0.06
SHH-201ENST00000297261 SERPINA3P01011 423 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 CXCL10P02778 98 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 ITGAMP11215 1152 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 NT5EP21589 574 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 BRAT1Q6PJG6 821 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 ZSWIM3Q96MP5 696 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 SLC2A11Q9BYW1 496 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 AMBRA1Q9C0C7 1298 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 LINC00597Q9H2U6 94 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 PIGUQ9H490 435 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 CALML5Q9NZT1 146 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 IL36AQ9UHA7 158 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 IGLV3-10A0A075B6K4 115 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 TRBV23OR9-2A0A075B6M9 112 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 LOC285095A0A1B0GVY8 99 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 SH3D21A4FU49 640 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 C5orf51A6NDU8 294 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 GLOD5A6NK44 160 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 CCDC85CA6NKD9 419 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 RP2O75695 350 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 PTHP01270 115 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 APODP05090 189 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 RHCEP18577 417 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 ACVR1BP36896 505 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 DAPP51397 102 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 EIF4HQ15056 248 aaKnown RBP14.64□□□□□ -0.07
SHH-201ENST00000297261 PRAMEF17Q5VTA0 474 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 TMIGD1Q6UXZ0 262 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 CEACAM19Q7Z692 300 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 UBE2Q1Q7Z7E8 422 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 WFIKKN2Q8TEU8 576 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 TCEAL4Q96EI5 215 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 HEBP1Q9NRV9 189 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 ABCD2Q9UBJ2 740 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 TRIP11Q15643 1979 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 LOC100509620A0A075B734 347 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 VLDLRP98155 873 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 RBBP4Q09028 425 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 HAGHLQ6PII5 290 aaPredicted RBP14.64□□□□□ -0.07
SHH-201ENST00000297261 GALNTL5Q7Z4T8 443 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 LAX1Q8IWV1 398 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 TOR1AIP2Q8NFQ8 470 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 SCAMP4Q969E2 229 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 SLC35B4Q969S0 331 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 FYTTD1Q96QD9 318 aaKnown RBP14.64□□□□□ -0.07
SHH-201ENST00000297261 CFAP20Q9Y6A4 193 aaKnown RBP14.64□□□□□ -0.07
SHH-201ENST00000297261 HIDE1A8MVS5 230 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 TNFRSF10AO00220 468 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 FMO6PO60774 539 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 SLC19A2O60779 497 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 JRKO75564 520 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 HLA-EP13747 358 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 EDNRAP25101 427 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 GP2P55259 537 aaKnown RBP14.64□□□□□ -0.07
SHH-201ENST00000297261 RGS1Q08116 209 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 ST3GAL3Q11203 375 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 AQP6Q13520 282 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 DOC2AQ14183 400 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 CEP68Q76N32 757 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 OR10G6Q8NH81 332 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 FIBINQ8TAL6 211 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 P2RY13Q9BPV8 354 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 ZNF471Q9BX82 626 aaPredicted RBP14.64□□□□□ -0.07
SHH-201ENST00000297261 RBCK1Q9BYM8 510 aa14.64□□□□□ -0.07
SHH-201ENST00000297261 SOBPA7XYQ1 873 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms