RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 HMOX2P30519 316 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 SOX18P35713 384 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 KRT6CP48668 564 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 PKNOX1P55347 436 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 HMGCS1Q01581 520 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 SLC18A2Q05940 514 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 CSTF3Q12996 717 aaKnown RBP13.32□□□□□ -0.28
HMGN3-201ENST00000275036 ZNF791Q3KP31 576 aaPredicted RBP13.32□□□□□ -0.28
HMGN3-201ENST00000275036 SP5Q6BEB4 398 aaPredicted RBP13.32□□□□□ -0.28
HMGN3-201ENST00000275036 FAM180BQ6P0A1 224 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 SLC48A1Q6P1K1 146 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 OPN5Q6U736 354 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 SCIMPQ6UWF3 145 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 RNF111Q6ZNA4 994 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 RTL4Q6ZR62 310 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 DOLPP1Q86YN1 238 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 LURAP1LQ8IV03 231 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 CNPY4Q8N129 248 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 C4orf33Q8N1A6 199 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 GHDCQ8N2G8 530 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 ZNF808Q8N4W9 903 aaPredicted RBP13.32□□□□□ -0.28
HMGN3-201ENST00000275036 CCNYL1Q8N7R7 359 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 OR2M7Q8NG81 312 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 APIPQ96GX9 242 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 GAL3ST4Q96RP7 486 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 PPCSQ9HAB8 311 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 SH2D2AQ9NP31 389 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 TNFRSF12AQ9NP84 129 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 HEY2Q9UBP5 337 aa13.32□□□□□ -0.28
HMGN3-201ENST00000275036 SUCOQ9UBS9 1254 aaKnown RBP13.32□□□□□ -0.28
HMGN3-201ENST00000275036 CSMD2Q7Z408 3487 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 A0A1B0GTH9 108 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 C1orf226A1L170 272 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 CDH16O75309 829 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 ENO1P06733 434 aaKnown RBP13.31□□□□□ -0.28
HMGN3-201ENST00000275036 KRT4P19013 534 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 S1PR1P21453 382 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 NAGLUP54802 743 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 MGAT2Q10469 447 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 FUT7Q11130 342 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 ART3Q13508 389 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 CCDC153Q494R4 210 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 FRMD7Q6ZUT3 714 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 SLC29A4Q7RTT9 530 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 GALNT12Q8IXK2 581 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 ZNF615Q8N8J6 731 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 ZNF441Q8N8Z8 693 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 GOLM1Q8NBJ4 401 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 AENQ8WTP8 325 aaKnown RBP13.31□□□□□ -0.28
HMGN3-201ENST00000275036 MARVELD3Q96A59 401 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 C11orf24Q96F05 449 aaPredicted RBP13.31□□□□□ -0.28
HMGN3-201ENST00000275036 DMRTA2Q96SC8 542 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 MID1IP1Q9NPA3 183 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 PLSCR2Q9NRY7 297 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 NMRK1Q9NWW6 199 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.31□□□□□ -0.28
HMGN3-201ENST00000275036 MCM8Q9UJA3 840 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 GRID1Q9ULK0 1009 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 STK38LQ9Y2H1 464 aa13.31□□□□□ -0.28
HMGN3-201ENST00000275036 V9GYY5 206 aaPredicted RBP13.31□□□□□ -0.28
HMGN3-201ENST00000275036 ABCA12Q86UK0 2595 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 TLDC2A0PJX2 215 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 OR6C76A6NM76 312 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 FAM166BA8MTA8 275 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 C19orf84I3L1E1 186 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 COPEO14579 308 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 CDC40O60508 579 aaKnown RBP eCLIP13.3□□□□□ -0.28
HMGN3-201ENST00000275036 ERAL1O75616 437 aaKnown RBP13.3□□□□□ -0.28
HMGN3-201ENST00000275036 GLSO94925 669 aaPredicted RBP13.3□□□□□ -0.28
HMGN3-201ENST00000275036 NUDT17P0C025 328 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 PORP16435 677 aaPredicted RBP13.3□□□□□ -0.28
HMGN3-201ENST00000275036 ABOP16442 354 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 CNR1P21554 472 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 NT5EP21589 574 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 FEN1P39748 380 aaKnown RBP13.3□□□□□ -0.28
HMGN3-201ENST00000275036 CCT5P48643 541 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 DNASE1L1P49184 302 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 DNAJB13P59910 316 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 TRA2BP62995 288 aaKnown RBP13.3□□□□□ -0.28
HMGN3-201ENST00000275036 FOXO1Q12778 655 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 DUSP8Q13202 625 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 PRICKLE4Q2TBC4 344 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 FAM111BQ6SJ93 734 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 RPTNQ6XPR3 784 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 TMEM64Q6YI46 380 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 BNC2Q6ZN30 1099 aaPredicted RBP13.3□□□□□ -0.28
HMGN3-201ENST00000275036 TICAM1Q8IUC6 712 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 MARVELD2Q8N4S9 558 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 SLC15A4Q8N697 577 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 GBP7Q8N8V2 638 aaPredicted RBP13.3□□□□□ -0.28
HMGN3-201ENST00000275036 SIMC1Q8NDZ2 872 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 SLC22A8Q8TCC7 542 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 SPACA9Q96E40 222 aaPredicted RBP13.3□□□□□ -0.28
HMGN3-201ENST00000275036 CCDC126Q96EE4 140 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 SGCZQ96LD1 299 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 ZNF681Q96N22 645 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 TTTY12Q9BZ98 90 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 DEFB127Q9H1M4 99 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 PROK2Q9HC23 129 aa13.3□□□□□ -0.28
HMGN3-201ENST00000275036 SACM1LQ9NTJ5 587 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms