RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SRRQ9GZT4 340 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 RETREG1Q9H6L5 497 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 PAQR5Q9NXK6 330 aaPredicted RBP10.11□□□□□ -0.79
USP28-201ENST00000003302 SLC25A13Q9UJS0 675 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 A0A1W2PQL4 384 aaPredicted RBP10.11□□□□□ -0.79
USP28-201ENST00000003302 SERTM1A2A2V5 107 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 PRMT3O60678 531 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 AP2A2O94973 939 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 IFNW1P05000 195 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 ALOX5P09917 674 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 S100A5P33763 92 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 WASP42768 502 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 SNRPD2P62316 118 aaKnown RBP10.11□□□□□ -0.79
USP28-201ENST00000003302 CDKL4Q5MAI5 379 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 MPP7Q5T2T1 576 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 ERAP2Q6P179 960 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 IL20RBQ6UXL0 311 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 MSANTD1Q6ZTZ1 278 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 CCDC149Q6ZUS6 474 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 DDX53Q86TM3 631 aaKnown RBP10.11□□□□□ -0.79
USP28-201ENST00000003302 IQCHQ86VS3 1027 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 TRAM1L1Q8N609 369 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 GEMIN6Q8WXD5 167 aaKnown RBP10.11□□□□□ -0.79
USP28-201ENST00000003302 FGF11Q92914 225 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 BHLHE41Q9C0J9 482 aaPredicted RBP10.11□□□□□ -0.79
USP28-201ENST00000003302 EQTNQ9NQ60 294 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 TXNL4BQ9NX01 149 aaKnown RBP10.11□□□□□ -0.79
USP28-201ENST00000003302 ASNA1O43681 348 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 LRG1P02750 347 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 THY1P04216 161 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 EPCAMP16422 314 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 ACADLP28330 430 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 TRHRP34981 398 aaPredicted RBP10.11□□□□□ -0.79
USP28-201ENST00000003302 BSGP35613 385 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 KIR2DL3P43628 341 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 MANFP55145 182 aaKnown RBP10.11□□□□□ -0.79
USP28-201ENST00000003302 FABP5Q01469 135 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 SPANXN2Q5MJ10 180 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 PDZD3Q86UT5 571 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 UBQLNLQ8IYU4 475 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 VPS37AQ8NEZ2 397 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 OR52I1Q8NGK6 324 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 OR52P1PQ8NH57 321 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 PDXPQ96GD0 296 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 ART5Q96L15 291 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 MENTQ9BUN1 341 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 HDHD5Q9BXW7 423 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 TMEM38AQ9H6F2 299 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 SERGEFQ9UGK8 458 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 HCN2Q9UL51 889 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 ASCC3Q8N3C0 2202 aaKnown RBP10.11□□□□□ -0.79
USP28-201ENST00000003302 A0A0X1KG70 313 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 GSAPA4D1B5 854 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 FAM47E-STBD1D6RA91 191 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 E2F2Q14209 437 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 GRASPQ7Z6J2 395 aaPredicted RBP10.1□□□□□ -0.79
USP28-201ENST00000003302 ATP6V1C2Q8NEY4 427 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 REPS1Q96D71 796 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 CEP44Q9C0F1 390 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 CLCA3PQ9Y6N3 262 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 OR52A4PA6NMU1 304 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 AKR7A2O43488 359 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 FCMRO60667 390 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 UGDHO60701 494 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 PAPLNO95428 1278 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 C6P13671 934 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 MAPK8P45983 427 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 TUBA1BP68363 451 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 TEAD4Q15561 434 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 SPDYE7PQ495Y7 208 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 TUBA1AQ71U36 451 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 DEPDC4Q8N2C3 294 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 CHCHD4Q8N4Q1 142 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 ZNF296Q8WUU4 475 aaPredicted RBP10.1□□□□□ -0.79
USP28-201ENST00000003302 SLC9A6Q92581 669 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 FUZQ9BT04 418 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 FZD3Q9NPG1 666 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 SEMA3GQ9NS98 782 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 IL36AQ9UHA7 158 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 A0A0G2JMP0 313 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 PRR23AA6NEV1 266 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 GTPBP1O00178 669 aaKnown RBP10.1□□□□□ -0.79
USP28-201ENST00000003302 TAF4O00268 1085 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 KIAA0355O15063 1070 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 CXCL14O95715 111 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 SCG5P05408 212 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 TFPIP10646 304 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 XKP51811 444 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 PSPHP78330 225 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 ZNF284Q2VY69 593 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 TBRG1Q3YBR2 411 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 C18orf63Q68DL7 685 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 VASNQ6EMK4 673 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 BBS10Q8TAM1 723 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 HHIPL1Q96JK4 782 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 BCL7BQ9BQE9 202 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 TTTY10Q9BZA0 68 aa10.1□□□□□ -0.79
USP28-201ENST00000003302 POLR2J3Q9H1A7 115 aaKnown RBP10.1□□□□□ -0.79
USP28-201ENST00000003302 DDX28Q9NUL7 540 aaKnown RBP10.1□□□□□ -0.79
USP28-201ENST00000003302 NDRG2Q9UN36 371 aaKnown RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms