RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 LAS1LQ9Y4W2 734 aaKnown RBP13.55□□□□□ -0.24
SCN1A-222ENST00000642141 CEP350Q5VT06 3117 aa13.54□□□□□ -0.24
SCN1A-222ENST00000642141 NRXN2Q9P2S2 1712 aa13.54□□□□□ -0.24
SCN1A-222ENST00000642141 EIF2S2P20042 333 aaKnown RBP13.54□□□□□ -0.24
SCN1A-222ENST00000642141 PRELPP51888 382 aa13.54□□□□□ -0.24
SCN1A-222ENST00000642141 ST5P78524 1137 aa13.54□□□□□ -0.24
SCN1A-222ENST00000642141 TTLL7Q6ZT98 887 aa13.54□□□□□ -0.24
SCN1A-222ENST00000642141 NECTIN2Q92692 538 aa13.54□□□□□ -0.24
SCN1A-222ENST00000642141 ADAMTS8Q9UP79 889 aa13.54□□□□□ -0.24
SCN1A-222ENST00000642141 SCN7AQ01118 1682 aa13.53□□□□□ -0.24
SCN1A-222ENST00000642141 CLEC4GQ6UXB4 293 aa13.53□□□□□ -0.24
SCN1A-222ENST00000642141 ZBTB3Q9H5J0 574 aa13.53□□□□□ -0.24
SCN1A-222ENST00000642141 ANXA1P04083 346 aa13.52□□□□□ -0.25
SCN1A-222ENST00000642141 GPTP24298 496 aa13.52□□□□□ -0.25
SCN1A-222ENST00000642141 RRAGCQ9HB90 399 aa13.52□□□□□ -0.25
SCN1A-222ENST00000642141 ARFGEF1Q9Y6D6 1849 aa13.52□□□□□ -0.25
SCN1A-222ENST00000642141 NFKBIEO00221 500 aa13.51□□□□□ -0.25
SCN1A-222ENST00000642141 SRGNP10124 158 aa13.51□□□□□ -0.25
SCN1A-222ENST00000642141 GTF2E1P29083 439 aaPredicted RBP13.51□□□□□ -0.25
SCN1A-222ENST00000642141 KRT24Q2M2I5 525 aa13.51□□□□□ -0.25
SCN1A-222ENST00000642141 TPTE2Q6XPS3 522 aa13.51□□□□□ -0.25
SCN1A-222ENST00000642141 KIF6Q6ZMV9 814 aa13.51□□□□□ -0.25
SCN1A-222ENST00000642141 RUNDC1Q96C34 613 aa13.51□□□□□ -0.25
SCN1A-222ENST00000642141 PRKRIP1Q9H875 184 aaPredicted RBP13.51□□□□□ -0.25
SCN1A-222ENST00000642141 ANKRD31Q8N7Z5 1873 aa13.5□□□□□ -0.25
SCN1A-222ENST00000642141 LMNB1P20700 586 aa13.5□□□□□ -0.25
SCN1A-222ENST00000642141 PROSER3Q2NL68 480 aa13.5□□□□□ -0.25
SCN1A-222ENST00000642141 PRPF40BQ6NWY9 871 aaKnown RBP13.5□□□□□ -0.25
SCN1A-222ENST00000642141 NUTM1Q86Y26 1132 aa13.5□□□□□ -0.25
SCN1A-222ENST00000642141 TRIM35Q9UPQ4 493 aa13.5□□□□□ -0.25
SCN1A-222ENST00000642141 MAP3K15Q6ZN16 1313 aa13.49□□□□□ -0.25
SCN1A-222ENST00000642141 LMOD3Q0VAK6 560 aa13.49□□□□□ -0.25
SCN1A-222ENST00000642141 STYK1Q6J9G0 422 aa13.49□□□□□ -0.25
SCN1A-222ENST00000642141 OLFM4Q6UX06 510 aa13.49□□□□□ -0.25
SCN1A-222ENST00000642141 C16orf71Q8IYS4 520 aaPredicted RBP13.49□□□□□ -0.25
SCN1A-222ENST00000642141 CNKSR1Q969H4 720 aa13.49□□□□□ -0.25
SCN1A-222ENST00000642141 ZNF428Q96B54 188 aa13.49□□□□□ -0.25
SCN1A-222ENST00000642141 MASTLQ96GX5 879 aa13.49□□□□□ -0.25
SCN1A-222ENST00000642141 BCORQ6W2J9 1755 aa13.48□□□□□ -0.25
SCN1A-222ENST00000642141 KDM3BQ7LBC6 1761 aa13.48□□□□□ -0.25
SCN1A-222ENST00000642141 KDM2BQ8NHM5 1336 aa13.48□□□□□ -0.25
SCN1A-222ENST00000642141 TOMM70O94826 608 aa13.48□□□□□ -0.25
SCN1A-222ENST00000642141 HSPA6P17066 643 aa13.48□□□□□ -0.25
SCN1A-222ENST00000642141 AIMP1Q12904 312 aaKnown RBP13.48□□□□□ -0.25
SCN1A-222ENST00000642141 ERFEQ4G0M1 354 aa13.48□□□□□ -0.25
SCN1A-222ENST00000642141 PDZRN3Q9UPQ7 1066 aa13.48□□□□□ -0.25
SCN1A-222ENST00000642141 COL11A2P13942 1736 aaPredicted RBP13.47□□□□□ -0.25
SCN1A-222ENST00000642141 ERVV-1B6SEH8 477 aa13.47□□□□□ -0.25
SCN1A-222ENST00000642141 NPR1P16066 1061 aa13.47□□□□□ -0.25
SCN1A-222ENST00000642141 PDIA6Q15084 440 aa13.47□□□□□ -0.25
SCN1A-222ENST00000642141 UBN2Q6ZU65 1347 aa13.46□□□□□ -0.25
SCN1A-222ENST00000642141 DLEC1Q9Y238 1755 aa13.46□□□□□ -0.25
SCN1A-222ENST00000642141 CHL1O00533 1208 aa13.46□□□□□ -0.25
SCN1A-222ENST00000642141 SUSD4Q5VX71 490 aa13.46□□□□□ -0.25
SCN1A-222ENST00000642141 SBF1O95248 1867 aa13.46□□□□□ -0.26
SCN1A-222ENST00000642141 SLX4Q8IY92 1834 aa13.46□□□□□ -0.26
SCN1A-222ENST00000642141 LAMB4A4D0S4 1761 aa13.45□□□□□ -0.26
SCN1A-222ENST00000642141 APAF1O14727 1248 aa13.45□□□□□ -0.26
SCN1A-222ENST00000642141 TCERG1O14776 1098 aaKnown RBP13.45□□□□□ -0.26
SCN1A-222ENST00000642141 CCDC184Q52MB2 194 aa13.45□□□□□ -0.26
SCN1A-222ENST00000642141 COPS6Q7L5N1 327 aa13.45□□□□□ -0.26
SCN1A-222ENST00000642141 XAGE3Q8WTP9 111 aa13.45□□□□□ -0.26
SCN1A-222ENST00000642141 TAOK3Q9H2K8 898 aa13.45□□□□□ -0.26
SCN1A-222ENST00000642141 ABCC12Q96J65 1359 aa13.45□□□□□ -0.26
SCN1A-222ENST00000642141 KLRG2A4D1S0 409 aaPredicted RBP13.44□□□□□ -0.26
SCN1A-222ENST00000642141 GLTPD2A6NH11 291 aa13.44□□□□□ -0.26
SCN1A-222ENST00000642141 C3orf67Q6ZVT6 689 aa13.44□□□□□ -0.26
SCN1A-222ENST00000642141 LRP10Q7Z4F1 713 aa13.44□□□□□ -0.26
SCN1A-222ENST00000642141 SLC51AQ86UW1 340 aa13.44□□□□□ -0.26
SCN1A-222ENST00000642141 C7orf43Q8WVR3 580 aa13.44□□□□□ -0.26
SCN1A-222ENST00000642141 NYXQ9GZU5 481 aa13.44□□□□□ -0.26
SCN1A-222ENST00000642141 BABAM1Q9NWV8 329 aa13.44□□□□□ -0.26
SCN1A-222ENST00000642141 RGL2O15211 777 aa13.43□□□□□ -0.26
SCN1A-222ENST00000642141 HTRA3P83110 453 aa13.43□□□□□ -0.26
SCN1A-222ENST00000642141 GIGYF2Q6Y7W6 1299 aaKnown RBP13.43□□□□□ -0.26
SCN1A-222ENST00000642141 ZNF34Q8IZ26 560 aa13.43□□□□□ -0.26
SCN1A-222ENST00000642141 ZNF277Q9NRM2 450 aaPredicted RBP13.43□□□□□ -0.26
SCN1A-222ENST00000642141 CHPF2Q9P2E5 772 aa13.43□□□□□ -0.26
SCN1A-222ENST00000642141 ERBB4Q15303 1308 aa13.42□□□□□ -0.26
SCN1A-222ENST00000642141 CACNA1SQ13698 1873 aa13.42□□□□□ -0.26
SCN1A-222ENST00000642141 ELL2O00472 640 aaPredicted RBP13.42□□□□□ -0.26
SCN1A-222ENST00000642141 VEGFAP15692 232 aaPredicted RBP13.42□□□□□ -0.26
SCN1A-222ENST00000642141 CCDC93Q567U6 631 aa13.42□□□□□ -0.26
SCN1A-222ENST00000642141 SYNE4Q8N205 404 aa13.42□□□□□ -0.26
SCN1A-222ENST00000642141 RPGRQ92834 1020 aaKnown RBP13.42□□□□□ -0.26
SCN1A-222ENST00000642141 MBIPQ9NS73 344 aa13.42□□□□□ -0.26
SCN1A-222ENST00000642141 DDNO94850 711 aaPredicted RBP13.41□□□□□ -0.26
SCN1A-222ENST00000642141 NTSR2O95665 410 aa13.41□□□□□ -0.26
SCN1A-222ENST00000642141 ALDH1B1P30837 517 aa13.41□□□□□ -0.26
SCN1A-222ENST00000642141 SOGA3Q5TF21 947 aa13.41□□□□□ -0.26
SCN1A-222ENST00000642141 HDGFL1Q5TGJ6 251 aa13.41□□□□□ -0.26
SCN1A-222ENST00000642141 DUSP27Q5VZP5 1158 aa13.41□□□□□ -0.26
SCN1A-222ENST00000642141 DPY19L2Q6NUT2 758 aa13.41□□□□□ -0.26
SCN1A-222ENST00000642141 RBM46Q8TBY0 533 aaKnown RBP13.41□□□□□ -0.26
SCN1A-222ENST00000642141 CCDC88AQ3V6T2 1871 aa13.41□□□□□ -0.26
SCN1A-222ENST00000642141 NUP98P52948 1817 aa13.41□□□□□ -0.26
SCN1A-222ENST00000642141 POTECB2RU33 542 aa13.4□□□□□ -0.26
SCN1A-222ENST00000642141 HCLS1P14317 486 aaPredicted RBP13.4□□□□□ -0.26
SCN1A-222ENST00000642141 ZEB1P37275 1124 aaPredicted RBP13.4□□□□□ -0.26
SCN1A-222ENST00000642141 PPP1R42Q7Z4L9 355 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms