RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.15□□□□□ -1.75
SCN1A-221ENST00000641996 CFAP45Q9UL16 551 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 INPP5BP32019 993 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 CHMP4BP1P59074 171 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 NAA16Q6N069 864 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-221ENST00000641996 ALKBH2Q6NS38 261 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 DCTN1Q14203 1278 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 SKIDA1Q1XH10 827 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 SMCR8Q8TEV9 937 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-221ENST00000641996 THOC1Q96FV9 657 aaKnown RBP4.15□□□□□ -1.75
SCN1A-221ENST00000641996 PLCB4Q15147 1175 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 RBM20Q5T481 1227 aaKnown RBP4.15□□□□□ -1.75
SCN1A-221ENST00000641996 CEP57L1Q8IYX8 460 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 BIN1O00499 593 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 TBCAO75347 108 aaKnown RBP4.15□□□□□ -1.75
SCN1A-221ENST00000641996 LDHCP07864 332 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 GUCY1B3Q02153 619 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 MYSM1Q5VVJ2 828 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 MSL1Q68DK7 614 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 SIRT1Q96EB6 747 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 ARPC4-TTLL3A0A0A6YYG9 625 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 PEX19P40855 299 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 PTPROQ16827 1216 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 EIF2AK1Q9BQI3 630 aaKnown RBP4.15□□□□□ -1.75
SCN1A-221ENST00000641996 UBA5Q9GZZ9 404 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 DONSONQ9NYP3 566 aa4.15□□□□□ -1.75
SCN1A-221ENST00000641996 WASHC5Q12768 1159 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 RBM46Q8TBY0 533 aaKnown RBP4.14□□□□□ -1.75
SCN1A-221ENST00000641996 FOSL1P15407 271 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 IFFO2Q5TF58 517 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 USP33Q8TEY7 942 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 PCMTD1Q96MG8 357 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-221ENST00000641996 PLIN2Q99541 437 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 HHATQ5VTY9 493 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 IQCA1Q86XH1 822 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 DMRT2Q9Y5R5 561 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-221ENST00000641996 BNIP1Q12981 228 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-221ENST00000641996 GSDMBQ8TAX9 411 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 PPP1R14BQ96C90 147 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 SYNDIG1Q9H7V2 258 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 VEZTQ9HBM0 779 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 ARGLU1Q9NWB6 273 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-221ENST00000641996 MYO6Q9UM54 1294 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 MYO7AQ13402 2215 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 SART1O43290 800 aaKnown RBP4.14□□□□□ -1.75
SCN1A-221ENST00000641996 IL4RP24394 825 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 MCM6Q14566 821 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 SLC39A3Q9BRY0 314 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 DAAM1Q9Y4D1 1078 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 SIX5Q8N196 739 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 VTI1BQ9UEU0 232 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 SBNO2Q9Y2G9 1366 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 EIF3JO75822 258 aaKnown RBP4.14□□□□□ -1.75
SCN1A-221ENST00000641996 MAP3K7CLP57077 242 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 NOB1Q9ULX3 412 aaKnown RBP4.14□□□□□ -1.75
SCN1A-221ENST00000641996 GATAD2AQ86YP4 633 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 SUGP1Q8IWZ8 645 aaKnown RBP4.14□□□□□ -1.75
SCN1A-221ENST00000641996 H0Y3Z8 333 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 TRIM42Q8IWZ5 723 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 ETAA1Q9NY74 926 aa4.14□□□□□ -1.75
SCN1A-221ENST00000641996 NASPP49321 788 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-221ENST00000641996 ASIC2Q16515 512 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 EPSTI1Q96J88 318 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 IWS1Q96ST2 819 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 MTRQ99707 1265 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 LSM1O15116 133 aaKnown RBP4.13□□□□□ -1.75
SCN1A-221ENST00000641996 MYCLP1P12525 358 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-221ENST00000641996 NGDNQ8NEJ9 315 aaKnown RBP4.13□□□□□ -1.75
SCN1A-221ENST00000641996 CDKL5O76039 1030 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 FERP16591 822 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 CLCN1P35523 988 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 TRAPPC10P48553 1259 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 CACTINQ8WUQ7 758 aaKnown RBP4.13□□□□□ -1.75
SCN1A-221ENST00000641996 FAM114A2Q9NRY5 505 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 GOLGA6L9A6NEM1 432 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 HNRNPUQ00839 825 aaKnown RBP eCLIP4.13□□□□□ -1.75
SCN1A-221ENST00000641996 SEPT2Q15019 361 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 ACBD5Q5T8D3 534 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-221ENST00000641996 HOOK1Q9UJC3 728 aaKnown RBP4.13□□□□□ -1.75
SCN1A-221ENST00000641996 PPP1R12BO60237 982 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-221ENST00000641996 SERPINC1P01008 464 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 TRAF1Q13077 416 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 RABEP1Q15276 862 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 SASS6Q6UVJ0 657 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 SPC25Q9HBM1 224 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 JADE2Q9NQC1 790 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 FLIIQ13045 1269 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 CCDC40Q4G0X9 1142 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 ANKRD23Q86SG2 305 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 TRIM5Q9C035 493 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 FIBPO43427 364 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 LDHAP00338 332 aaKnown RBP4.13□□□□□ -1.75
SCN1A-221ENST00000641996 ABL1P00519 1130 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 POU5F1Q01860 360 aaKnown RBP4.13□□□□□ -1.75
SCN1A-221ENST00000641996 CEP70Q8NHQ1 597 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 FAM107BQ9H098 131 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 TMOD4Q9NZQ9 345 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 OGFRQ9NZT2 677 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms