RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 CAMTA2O94983 1202 aa20.15■□□□□ 0.82
SYNE2-228ENST00000639659 PRPF40BQ6NWY9 871 aaKnown RBP20.15■□□□□ 0.82
SYNE2-228ENST00000639659 CNKSR1Q969H4 720 aa20.15■□□□□ 0.82
SYNE2-228ENST00000639659 BCORQ6W2J9 1755 aa20.15■□□□□ 0.82
SYNE2-228ENST00000639659 PRKAR2BP31323 418 aa20.14■□□□□ 0.81
SYNE2-228ENST00000639659 MKRN1Q9UHC7 482 aaKnown RBP20.14■□□□□ 0.81
SYNE2-228ENST00000639659 POTEIP0CG38 1075 aa20.13■□□□□ 0.81
SYNE2-228ENST00000639659 POTEJP0CG39 1038 aa20.13■□□□□ 0.81
SYNE2-228ENST00000639659 CHADLQ6NUI6 762 aa20.13■□□□□ 0.81
SYNE2-228ENST00000639659 NBPF5PQ86XG9 351 aaPredicted RBP20.13■□□□□ 0.81
SYNE2-228ENST00000639659 FAM177BA6PVY3 158 aa20.12■□□□□ 0.81
SYNE2-228ENST00000639659 STYK1Q6J9G0 422 aa20.12■□□□□ 0.81
SYNE2-228ENST00000639659 MASTLQ96GX5 879 aa20.12■□□□□ 0.81
SYNE2-228ENST00000639659 PRAMEF22A3QJZ6 481 aa20.11■□□□□ 0.81
SYNE2-228ENST00000639659 SRGNP10124 158 aa20.11■□□□□ 0.81
SYNE2-228ENST00000639659 PHACTR3Q96KR7 559 aa20.11■□□□□ 0.81
SYNE2-228ENST00000639659 CFAP53Q96M91 514 aa20.11■□□□□ 0.81
SYNE2-228ENST00000639659 USP16Q9Y5T5 823 aa20.11■□□□□ 0.81
SYNE2-228ENST00000639659 ARFGEF2Q9Y6D5 1785 aa20.11■□□□□ 0.81
SYNE2-228ENST00000639659 LTBP3Q9NS15 1303 aa20.1■□□□□ 0.81
SYNE2-228ENST00000639659 SOGA3Q5TF21 947 aa20.1■□□□□ 0.81
SYNE2-228ENST00000639659 CEMIPQ8WUJ3 1361 aa20.09■□□□□ 0.81
SYNE2-228ENST00000639659 MCM10Q7L590 875 aa20.09■□□□□ 0.81
SYNE2-228ENST00000639659 RTF1Q92541 710 aaKnown RBP20.09■□□□□ 0.81
SYNE2-228ENST00000639659 ZNF652Q9Y2D9 606 aa20.09■□□□□ 0.81
SYNE2-228ENST00000639659 CCDC93Q567U6 631 aa20.08■□□□□ 0.81
SYNE2-228ENST00000639659 EAPPQ56P03 285 aaPredicted RBP20.08■□□□□ 0.81
SYNE2-228ENST00000639659 RSPH6AQ9H0K4 717 aa20.08■□□□□ 0.81
SYNE2-228ENST00000639659 CREBZFQ9NS37 354 aa20.08■□□□□ 0.81
SYNE2-228ENST00000639659 IQCA1LA6NCM1 817 aa20.06■□□□□ 0.8
SYNE2-228ENST00000639659 U2AF1L5P0DN76 240 aaPredicted RBP20.06■□□□□ 0.8
SYNE2-228ENST00000639659 U2AF1Q01081 240 aaKnown RBP eCLIP20.06■□□□□ 0.8
SYNE2-228ENST00000639659 OLFM4Q6UX06 510 aa20.06■□□□□ 0.8
SYNE2-228ENST00000639659 ZNF277Q9NRM2 450 aaPredicted RBP20.06■□□□□ 0.8
SYNE2-228ENST00000639659 NIP7Q9Y221 180 aaKnown RBP eCLIP20.06■□□□□ 0.8
SYNE2-228ENST00000639659 NUDCQ9Y266 331 aa20.06■□□□□ 0.8
SYNE2-228ENST00000639659 NPC1L1Q9UHC9 1359 aa20.06■□□□□ 0.8
SYNE2-228ENST00000639659 SNRPA1P09661 255 aaKnown RBP20.05■□□□□ 0.8
SYNE2-228ENST00000639659 NPR1P16066 1061 aa20.05■□□□□ 0.8
SYNE2-228ENST00000639659 DCTN1Q14203 1278 aa20.05■□□□□ 0.8
SYNE2-228ENST00000639659 CLEC11AQ9Y240 323 aa20.05■□□□□ 0.8
SYNE2-228ENST00000639659 ZNF541Q9H0D2 1346 aa20.04■□□□□ 0.8
SYNE2-228ENST00000639659 GTF2E1P29083 439 aaPredicted RBP20.04■□□□□ 0.8
SYNE2-228ENST00000639659 LDHDQ86WU2 507 aa20.04■□□□□ 0.8
SYNE2-228ENST00000639659 FKBP4Q02790 459 aaKnown RBP eCLIP20.03■□□□□ 0.8
SYNE2-228ENST00000639659 TAF1DQ9H5J8 278 aaPredicted RBP20.03■□□□□ 0.8
SYNE2-228ENST00000639659 SCN4AP35499 1836 aa20.02■□□□□ 0.8
SYNE2-228ENST00000639659 CLEC4GQ6UXB4 293 aa20.02■□□□□ 0.8
SYNE2-228ENST00000639659 TPTE2Q6XPS3 522 aa20.02■□□□□ 0.8
SYNE2-228ENST00000639659 NGEFQ8N5V2 710 aa20.02■□□□□ 0.8
SYNE2-228ENST00000639659 CNTNAP1P78357 1384 aa20.01■□□□□ 0.79
SYNE2-228ENST00000639659 NBPF26B4DH59 902 aa20■□□□□ 0.79
SYNE2-228ENST00000639659 FOXN1O15353 648 aa20■□□□□ 0.79
SYNE2-228ENST00000639659 NBPF10Q6P3W6 841 aaKnown RBP20■□□□□ 0.79
SYNE2-228ENST00000639659 NBPF15Q8N660 670 aa20■□□□□ 0.79
SYNE2-228ENST00000639659 C7orf43Q8WVR3 580 aa20■□□□□ 0.79
SYNE2-228ENST00000639659 AIDAQ96BJ3 306 aa20■□□□□ 0.79
SYNE2-228ENST00000639659 L3MBTL3Q96JM7 780 aaPredicted RBP20■□□□□ 0.79
SYNE2-228ENST00000639659 MIS18AQ9NYP9 233 aa20■□□□□ 0.79
SYNE2-228ENST00000639659 HACL1Q9UJ83 578 aa20■□□□□ 0.79
SYNE2-228ENST00000639659 RNF123Q5XPI4 1314 aa20■□□□□ 0.79
SYNE2-228ENST00000639659 HLFQ16534 295 aa19.99■□□□□ 0.79
SYNE2-228ENST00000639659 TMEM88BA6NKF7 163 aa19.98■□□□□ 0.79
SYNE2-228ENST00000639659 EPHX2P34913 555 aa19.98■□□□□ 0.79
SYNE2-228ENST00000639659 RTKN2Q8IZC4 609 aa19.98■□□□□ 0.79
SYNE2-228ENST00000639659 PASKQ96RG2 1323 aa19.98■□□□□ 0.79
SYNE2-228ENST00000639659 LAMB4A4D0S4 1761 aa19.98■□□□□ 0.79
SYNE2-228ENST00000639659 IARSP41252 1262 aaKnown RBP19.97■□□□□ 0.79
SYNE2-228ENST00000639659 NUTM1Q86Y26 1132 aa19.97■□□□□ 0.79
SYNE2-228ENST00000639659 SYNE4Q8N205 404 aa19.97■□□□□ 0.79
SYNE2-228ENST00000639659 PPP2R1AP30153 589 aa19.96■□□□□ 0.79
SYNE2-228ENST00000639659 ALDH1B1P30837 517 aa19.96■□□□□ 0.79
SYNE2-228ENST00000639659 VEGFBP49765 207 aa19.96■□□□□ 0.79
SYNE2-228ENST00000639659 MAP1SQ66K74 1059 aaPredicted RBP19.96■□□□□ 0.79
SYNE2-228ENST00000639659 GJA3Q9Y6H8 435 aa19.96■□□□□ 0.79
SYNE2-228ENST00000639659 ABCC12Q96J65 1359 aa19.95■□□□□ 0.79
SYNE2-228ENST00000639659 KLRG2A4D1S0 409 aaPredicted RBP19.94■□□□□ 0.78
SYNE2-228ENST00000639659 TCERG1O14776 1098 aaKnown RBP19.94■□□□□ 0.78
SYNE2-228ENST00000639659 NEFMP07197 916 aa19.94■□□□□ 0.78
SYNE2-228ENST00000639659 GPTP24298 496 aa19.94■□□□□ 0.78
SYNE2-228ENST00000639659 TAF7Q15545 349 aaPredicted RBP19.94■□□□□ 0.78
SYNE2-228ENST00000639659 JDP2Q8WYK2 163 aa19.94■□□□□ 0.78
SYNE2-228ENST00000639659 RPGRQ92834 1020 aaKnown RBP19.94■□□□□ 0.78
SYNE2-228ENST00000639659 RRP7AQ9Y3A4 280 aaKnown RBP19.94■□□□□ 0.78
SYNE2-228ENST00000639659 ITGBL1O95965 494 aaPredicted RBP19.93■□□□□ 0.78
SYNE2-228ENST00000639659 MYL6BP14649 208 aa19.93■□□□□ 0.78
SYNE2-228ENST00000639659 KIF6Q6ZMV9 814 aa19.93■□□□□ 0.78
SYNE2-228ENST00000639659 NYXQ9GZU5 481 aa19.93■□□□□ 0.78
SYNE2-228ENST00000639659 ABT1Q9ULW3 272 aaKnown RBP19.93■□□□□ 0.78
SYNE2-228ENST00000639659 CTCFP49711 727 aaPredicted RBP19.92■□□□□ 0.78
SYNE2-228ENST00000639659 EIF6P56537 245 aaKnown RBP19.92■□□□□ 0.78
SYNE2-228ENST00000639659 PAXIP1Q6ZW49 1069 aaPredicted RBP19.92■□□□□ 0.78
SYNE2-228ENST00000639659 PNMA8AQ86V59 439 aaPredicted RBP19.92■□□□□ 0.78
SYNE2-228ENST00000639659 CNTROBQ8N137 903 aa19.92■□□□□ 0.78
SYNE2-228ENST00000639659 NUP98P52948 1817 aa19.91■□□□□ 0.78
SYNE2-228ENST00000639659 FZD9O00144 591 aa19.91■□□□□ 0.78
SYNE2-228ENST00000639659 HTATSF1O43719 755 aaKnown RBP19.91■□□□□ 0.78
SYNE2-228ENST00000639659 LMOD1P29536 600 aaPredicted RBP19.91■□□□□ 0.78
SYNE2-228ENST00000639659 GPC2Q8N158 579 aa19.91■□□□□ 0.78
SYNE2-228ENST00000639659 ZBTB3Q9H5J0 574 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms