RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 GCOM1H8Y6P7 765 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-217ENST00000637988 MYZAPP0CAP1 466 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 SSRP1Q08945 709 aaKnown RBP7.08□□□□□ -1.28
SCN1A-217ENST00000637988 MSANTD4Q8NCY6 345 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 PHF8Q9UPP1 1060 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 LAMC3Q9Y6N6 1575 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 MBD3O95983 291 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 BAG6P46379 1132 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 CEP63Q96MT8 703 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 KRT85P78386 507 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 TBC1D5Q92609 795 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 MYD88Q99836 296 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 CWC25Q9NXE8 425 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-217ENST00000637988 TSPY2A6NKD2 308 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 TSPY3P0CV98 308 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 TSPY8P0CW00 308 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 RBM26Q5T8P6 1007 aaKnown RBP7.08□□□□□ -1.28
SCN1A-217ENST00000637988 CCDC148Q8NFR7 591 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 MACROD2A1Z1Q3 448 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 FOXO3O43524 673 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 RBM17Q96I25 401 aaKnown RBP7.08□□□□□ -1.28
SCN1A-217ENST00000637988 TNMDQ9H2S6 317 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 PODXL2Q9NZ53 605 aa7.08□□□□□ -1.28
SCN1A-217ENST00000637988 ZNF213O14771 459 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 TBCAO75347 108 aaKnown RBP7.07□□□□□ -1.28
SCN1A-217ENST00000637988 CCDC192P0DO97 292 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 NEK4P51957 841 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 LEKR1Q6ZMV7 388 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 DYDC1Q8WWB3 177 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 ZBED9Q6R2W3 1325 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 SLC8A3P57103 927 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 RRS1Q15050 365 aaKnown RBP7.07□□□□□ -1.28
SCN1A-217ENST00000637988 TAF7Q15545 349 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-217ENST00000637988 ZNF428Q96B54 188 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 IKBKGQ9Y6K9 419 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 ADGRL1O94910 1474 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 NAIPQ13075 1403 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 CCDC175P0C221 793 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 OTUD7BQ6GQQ9 843 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 IFNL2Q8IZJ0 200 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 PLVAPQ9BX97 442 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 AK9Q5TCS8 1911 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 PDE6BP35913 854 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 LARP1BQ659C4 914 aaKnown RBP7.07□□□□□ -1.28
SCN1A-217ENST00000637988 DHX37Q8IY37 1157 aaKnown RBP7.07□□□□□ -1.28
SCN1A-217ENST00000637988 LRRC59Q96AG4 307 aaKnown RBP7.07□□□□□ -1.28
SCN1A-217ENST00000637988 ZSCAN31Q96LW9 406 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-217ENST00000637988 FANCAO15360 1455 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 ITSN2Q9NZM3 1697 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 DEKP35659 375 aaKnown RBP7.07□□□□□ -1.28
SCN1A-217ENST00000637988 EAPPQ56P03 285 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-217ENST00000637988 CFAP70Q5T0N1 1121 aa7.07□□□□□ -1.28
SCN1A-217ENST00000637988 CPLX3Q8WVH0 158 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.06□□□□□ -1.28
SCN1A-217ENST00000637988 AMOTL2Q9Y2J4 779 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 CEP83Q9Y592 693 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 IQGAP2Q13576 1575 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 FGD6Q6ZV73 1430 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 RIOK3O14730 519 aaKnown RBP7.06□□□□□ -1.28
SCN1A-217ENST00000637988 VIMP08670 466 aaKnown RBP7.06□□□□□ -1.28
SCN1A-217ENST00000637988 MAP2K1Q02750 393 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-217ENST00000637988 TPTE2Q6XPS3 522 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 FAM114A1Q8IWE2 563 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 HACE1Q8IYU2 909 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 NOB1Q9ULX3 412 aaKnown RBP7.06□□□□□ -1.28
SCN1A-217ENST00000637988 USP8P40818 1118 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 GOLGA1Q92805 767 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 NACA2Q9H009 215 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 NDC80O14777 642 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 MAP4K4O95819 1239 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-217ENST00000637988 GPTP24298 496 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 PLCD4Q9BRC7 762 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 C6orf50Q9HD87 102 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 SPDYE3A6NKU9 549 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 NR1I2O75469 434 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-217ENST00000637988 SUPT20HQ8NEM7 779 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 KIF1BPQ96EK5 621 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 PDRG1Q9NUG6 133 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 DNMBPQ6XZF7 1577 aa7.06□□□□□ -1.28
SCN1A-217ENST00000637988 CWC27Q6UX04 472 aaKnown RBP7.06□□□□□ -1.28
SCN1A-217ENST00000637988 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.05□□□□□ -1.28
SCN1A-217ENST00000637988 WDR33Q9C0J8 1336 aaKnown RBP7.05□□□□□ -1.28
SCN1A-217ENST00000637988 CEP135Q66GS9 1140 aa7.05□□□□□ -1.28
SCN1A-217ENST00000637988 TRMT1LQ7Z2T5 733 aaKnown RBP7.05□□□□□ -1.28
SCN1A-217ENST00000637988 CACYBPQ9HB71 228 aaKnown RBP7.05□□□□□ -1.28
SCN1A-217ENST00000637988 ECM2O94769 699 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-217ENST00000637988 TRAPPC3LQ5T215 181 aa7.05□□□□□ -1.28
SCN1A-217ENST00000637988 ACSBG1Q96GR2 724 aa7.05□□□□□ -1.28
SCN1A-217ENST00000637988 TSPY26PQ9H489 355 aa7.05□□□□□ -1.28
SCN1A-217ENST00000637988 TRIM6Q9C030 488 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-217ENST00000637988 CIZ1Q9ULV3 898 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-217ENST00000637988 CASKIN1Q8WXD9 1431 aa7.05□□□□□ -1.28
SCN1A-217ENST00000637988 H0YIN7 160 aa7.05□□□□□ -1.28
SCN1A-217ENST00000637988 CASTP20810 708 aaKnown RBP7.05□□□□□ -1.28
SCN1A-217ENST00000637988 MFSD6Q6ZSS7 791 aa7.05□□□□□ -1.28
SCN1A-217ENST00000637988 NBPF3Q9H094 633 aa7.05□□□□□ -1.28
SCN1A-217ENST00000637988 VAT1LQ9HCJ6 419 aa7.05□□□□□ -1.28
SCN1A-217ENST00000637988 CCDC87Q9NVE4 849 aa7.05□□□□□ -1.28
SCN1A-217ENST00000637988 TCHPQ9BT92 498 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms