RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 METTL22Q9BUU2 404 aaPredicted RBP23.95■■□□□ 1.42
CLN3-258ENST00000637184 ALDH1L1O75891 902 aa23.94■■□□□ 1.42
CLN3-258ENST00000637184 LINS1Q8NG48 757 aa23.94■■□□□ 1.42
CLN3-258ENST00000637184 MYH14Q7Z406 1995 aaKnown RBP23.94■■□□□ 1.42
CLN3-258ENST00000637184 KCNQ4P56696 695 aa23.93■■□□□ 1.42
CLN3-258ENST00000637184 KIF6Q6ZMV9 814 aa23.93■■□□□ 1.42
CLN3-258ENST00000637184 RREB1Q92766 1687 aa23.93■■□□□ 1.42
CLN3-258ENST00000637184 GNAI3P08754 354 aa23.93■■□□□ 1.42
CLN3-258ENST00000637184 LINC00116Q8NCU8 138 aa23.93■■□□□ 1.42
CLN3-258ENST00000637184 C1orf115Q9H7X2 142 aa23.93■■□□□ 1.42
CLN3-258ENST00000637184 MYD88Q99836 296 aa23.92■■□□□ 1.42
CLN3-258ENST00000637184 NUP188Q5SRE5 1749 aa23.92■■□□□ 1.42
CLN3-258ENST00000637184 ARXQ96QS3 562 aa23.91■■□□□ 1.42
CLN3-258ENST00000637184 USP44Q9H0E7 712 aa23.91■■□□□ 1.42
CLN3-258ENST00000637184 ZBTB3Q9H5J0 574 aa23.91■■□□□ 1.42
CLN3-258ENST00000637184 EIF5P55010 431 aaKnown RBP23.91■■□□□ 1.42
CLN3-258ENST00000637184 CWF19L2Q2TBE0 894 aaKnown RBP23.91■■□□□ 1.42
CLN3-258ENST00000637184 CNTNAP4Q9C0A0 1308 aa23.9■■□□□ 1.42
CLN3-258ENST00000637184 CENPQQ7L2Z9 268 aaPredicted RBP23.9■■□□□ 1.42
CLN3-258ENST00000637184 RWDD1Q9H446 243 aaPredicted RBP23.9■■□□□ 1.42
CLN3-258ENST00000637184 TAF1LQ8IZX4 1826 aa23.89■■□□□ 1.42
CLN3-258ENST00000637184 IGKV5-2P06315 115 aa23.89■■□□□ 1.42
CLN3-258ENST00000637184 KDM2BQ8NHM5 1336 aa23.89■■□□□ 1.41
CLN3-258ENST00000637184 IGHDP01880 384 aa23.88■■□□□ 1.41
CLN3-258ENST00000637184 GNAI2P04899 355 aa23.88■■□□□ 1.41
CLN3-258ENST00000637184 UBTFL1P0CB47 393 aaPredicted RBP23.88■■□□□ 1.41
CLN3-258ENST00000637184 C9orf78Q9NZ63 289 aaPredicted RBP23.88■■□□□ 1.41
CLN3-258ENST00000637184 MAP3K15Q6ZN16 1313 aa23.88■■□□□ 1.41
CLN3-258ENST00000637184 NEURL1BA8MQ27 555 aa23.88■■□□□ 1.41
CLN3-258ENST00000637184 RC3H1Q5TC82 1133 aaKnown RBP23.88■■□□□ 1.41
CLN3-258ENST00000637184 DZIP3Q86Y13 1208 aaKnown RBP23.88■■□□□ 1.41
CLN3-258ENST00000637184 AFDNP55196 1824 aaKnown RBP23.87■■□□□ 1.41
CLN3-258ENST00000637184 IBTKQ9P2D0 1353 aaPredicted RBP23.87■■□□□ 1.41
CLN3-258ENST00000637184 HDAC1Q13547 482 aaPredicted RBP23.87■■□□□ 1.41
CLN3-258ENST00000637184 SLC27A3Q5K4L6 730 aa23.87■■□□□ 1.41
CLN3-258ENST00000637184 ATP5J2-PTCD1G3V325 749 aa23.86■■□□□ 1.41
CLN3-258ENST00000637184 TBC1D2BQ9UPU7 963 aa23.86■■□□□ 1.41
CLN3-258ENST00000637184 APBA3O96018 575 aa23.85■■□□□ 1.41
CLN3-258ENST00000637184 NBPF7P0C2Y1 421 aaPredicted RBP23.85■■□□□ 1.41
CLN3-258ENST00000637184 RPAP2Q8IXW5 612 aaPredicted RBP23.85■■□□□ 1.41
CLN3-258ENST00000637184 ERVV-1B6SEH8 477 aa23.84■■□□□ 1.41
CLN3-258ENST00000637184 GRM8O00222 908 aa23.84■■□□□ 1.41
CLN3-258ENST00000637184 GCKRQ14397 625 aa23.84■■□□□ 1.41
CLN3-258ENST00000637184 LRRC4BQ9NT99 713 aa23.84■■□□□ 1.41
CLN3-258ENST00000637184 HDAC5Q9UQL6 1122 aa23.84■■□□□ 1.41
CLN3-258ENST00000637184 COL15A1P39059 1388 aa23.84■■□□□ 1.41
CLN3-258ENST00000637184 TCIRG1Q13488 830 aa23.83■■□□□ 1.41
CLN3-258ENST00000637184 GIGYF2Q6Y7W6 1299 aaKnown RBP23.83■■□□□ 1.41
CLN3-258ENST00000637184 C4BP0C0L5 1744 aa23.83■■□□□ 1.41
CLN3-258ENST00000637184 A0A087WZG4 1122 aa23.83■■□□□ 1.4
CLN3-258ENST00000637184 PLSCR1O15162 318 aa23.83■■□□□ 1.4
CLN3-258ENST00000637184 HSP90AB3PQ58FF7 597 aa23.83■■□□□ 1.4
CLN3-258ENST00000637184 CEP85Q6P2H3 762 aa23.83■■□□□ 1.4
CLN3-258ENST00000637184 ANKRD44Q8N8A2 993 aa23.83■■□□□ 1.4
CLN3-258ENST00000637184 LRRFIP2Q9Y608 721 aaKnown RBP23.83■■□□□ 1.4
CLN3-258ENST00000637184 HMGB2P26583 209 aaKnown RBP23.82■■□□□ 1.4
CLN3-258ENST00000637184 UTYO14607 1347 aa23.82■■□□□ 1.4
CLN3-258ENST00000637184 GNPATO15228 680 aa23.81■■□□□ 1.4
CLN3-258ENST00000637184 RPS6KA4O75676 772 aa23.81■■□□□ 1.4
CLN3-258ENST00000637184 NUP98P52948 1817 aa23.81■■□□□ 1.4
CLN3-258ENST00000637184 HLFQ16534 295 aa23.81■■□□□ 1.4
CLN3-258ENST00000637184 SIRT2Q8IXJ6 389 aa23.81■■□□□ 1.4
CLN3-258ENST00000637184 CCDC191Q8NCU4 936 aa23.81■■□□□ 1.4
CLN3-258ENST00000637184 TNS1Q9HBL0 1735 aaKnown RBP23.81■■□□□ 1.4
CLN3-258ENST00000637184 TXNRD1Q16881 649 aa23.8■■□□□ 1.4
CLN3-258ENST00000637184 ISCA1Q9BUE6 129 aa23.8■■□□□ 1.4
CLN3-258ENST00000637184 CWC25Q9NXE8 425 aaPredicted RBP23.8■■□□□ 1.4
CLN3-258ENST00000637184 RTCBQ9Y3I0 505 aaKnown RBP23.8■■□□□ 1.4
CLN3-258ENST00000637184 AK7Q96M32 723 aa23.79■■□□□ 1.4
CLN3-258ENST00000637184 ANKRD36CQ5JPF3 1778 aa23.79■■□□□ 1.4
CLN3-258ENST00000637184 TRIM28Q13263 835 aaKnown RBP23.78■■□□□ 1.4
CLN3-258ENST00000637184 HMMRO75330 724 aa23.78■■□□□ 1.4
CLN3-258ENST00000637184 CAMTA2O94983 1202 aa23.78■■□□□ 1.4
CLN3-258ENST00000637184 PROM2Q8N271 834 aa23.78■■□□□ 1.4
CLN3-258ENST00000637184 ATP8B2P98198 1209 aa23.76■■□□□ 1.39
CLN3-258ENST00000637184 UBE3BQ7Z3V4 1068 aa23.76■■□□□ 1.39
CLN3-258ENST00000637184 BCORQ6W2J9 1755 aa23.75■■□□□ 1.39
CLN3-258ENST00000637184 H7C1W4 665 aa23.75■■□□□ 1.39
CLN3-258ENST00000637184 SMC5Q8IY18 1101 aa23.75■■□□□ 1.39
CLN3-258ENST00000637184 SUCLG2Q96I99 432 aa23.75■■□□□ 1.39
CLN3-258ENST00000637184 ZNF652Q9Y2D9 606 aa23.75■■□□□ 1.39
CLN3-258ENST00000637184 RGPD3A6NKT7 1758 aaPredicted RBP23.74■■□□□ 1.39
CLN3-258ENST00000637184 RGPD4Q7Z3J3 1758 aa23.74■■□□□ 1.39
CLN3-258ENST00000637184 GPTP24298 496 aa23.74■■□□□ 1.39
CLN3-258ENST00000637184 GCC1Q96CN9 775 aa23.74■■□□□ 1.39
CLN3-258ENST00000637184 SMIM5Q71RC9 77 aa23.73■■□□□ 1.39
CLN3-258ENST00000637184 PELP1Q8IZL8 1130 aaKnown RBP23.73■■□□□ 1.39
CLN3-258ENST00000637184 JARID2Q92833 1246 aaPredicted RBP23.73■■□□□ 1.39
CLN3-258ENST00000637184 PNMA6EA0A0J9YXQ4 647 aa23.73■■□□□ 1.39
CLN3-258ENST00000637184 TRAPPC3LQ5T215 181 aa23.73■■□□□ 1.39
CLN3-258ENST00000637184 CLEC4GQ6UXB4 293 aa23.73■■□□□ 1.39
CLN3-258ENST00000637184 NLRP10Q86W26 655 aa23.73■■□□□ 1.39
CLN3-258ENST00000637184 ZNF34Q8IZ26 560 aa23.73■■□□□ 1.39
CLN3-258ENST00000637184 NARFQ9UHQ1 456 aa23.73■■□□□ 1.39
CLN3-258ENST00000637184 RGL2O15211 777 aa23.72■■□□□ 1.39
CLN3-258ENST00000637184 ZPR1O75312 459 aa23.72■■□□□ 1.39
CLN3-258ENST00000637184 CASP7P55210 303 aa23.72■■□□□ 1.39
CLN3-258ENST00000637184 PPP1R42Q7Z4L9 355 aa23.72■■□□□ 1.39
CLN3-258ENST00000637184 ARHGEF1Q92888 912 aaKnown RBP23.72■■□□□ 1.39
CLN3-258ENST00000637184 UBR3Q6ZT12 1888 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms