RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 IGKV5-2P06315 115 aa23.12■■□□□ 1.29
CLN3-254ENST00000637050 NEXNQ0ZGT2 675 aa23.12■■□□□ 1.29
CLN3-254ENST00000637050 CEP85Q6P2H3 762 aa23.12■■□□□ 1.29
CLN3-254ENST00000637050 CWF19L2Q2TBE0 894 aaKnown RBP23.11■■□□□ 1.29
CLN3-254ENST00000637050 FAM196AQ6ZSG2 479 aa23.11■■□□□ 1.29
CLN3-254ENST00000637050 ZBTB1Q9Y2K1 713 aa23.11■■□□□ 1.29
CLN3-254ENST00000637050 UBTFL1P0CB47 393 aaPredicted RBP23.1■■□□□ 1.29
CLN3-254ENST00000637050 SMC5Q8IY18 1101 aa23.1■■□□□ 1.29
CLN3-254ENST00000637050 RGS17Q9UGC6 210 aaPredicted RBP23.1■■□□□ 1.29
CLN3-254ENST00000637050 COL5A3P25940 1745 aaPredicted RBP23.1■■□□□ 1.29
CLN3-254ENST00000637050 RXRBP28702 533 aa23.09■■□□□ 1.29
CLN3-254ENST00000637050 IL6STP40189 918 aaPredicted RBP23.09■■□□□ 1.29
CLN3-254ENST00000637050 MYD88Q99836 296 aa23.09■■□□□ 1.29
CLN3-254ENST00000637050 BCL11BQ9C0K0 894 aaPredicted RBP23.09■■□□□ 1.29
CLN3-254ENST00000637050 CCDC87Q9NVE4 849 aa23.09■■□□□ 1.29
CLN3-254ENST00000637050 NEURL1BA8MQ27 555 aa23.09■■□□□ 1.29
CLN3-254ENST00000637050 NBPF7P0C2Y1 421 aaPredicted RBP23.09■■□□□ 1.29
CLN3-254ENST00000637050 CRKLP46109 303 aaKnown RBP23.09■■□□□ 1.29
CLN3-254ENST00000637050 INTS5Q6P9B9 1019 aaKnown RBP23.09■■□□□ 1.29
CLN3-254ENST00000637050 UTYO14607 1347 aa23.08■■□□□ 1.29
CLN3-254ENST00000637050 LRRFIP2Q9Y608 721 aaKnown RBP23.07■■□□□ 1.28
CLN3-254ENST00000637050 LY75O60449 1722 aa23.07■■□□□ 1.28
CLN3-254ENST00000637050 C9orf78Q9NZ63 289 aaPredicted RBP23.06■■□□□ 1.28
CLN3-254ENST00000637050 ZNF330Q9Y3S2 320 aaPredicted RBP23.06■■□□□ 1.28
CLN3-254ENST00000637050 GRM8O00222 908 aa23.06■■□□□ 1.28
CLN3-254ENST00000637050 GCKRQ14397 625 aa23.06■■□□□ 1.28
CLN3-254ENST00000637050 KIF6Q6ZMV9 814 aa23.06■■□□□ 1.28
CLN3-254ENST00000637050 ZBTB3Q9H5J0 574 aa23.06■■□□□ 1.28
CLN3-254ENST00000637050 EIF5P55010 431 aaKnown RBP23.05■■□□□ 1.28
CLN3-254ENST00000637050 GCC1Q96CN9 775 aa23.05■■□□□ 1.28
CLN3-254ENST00000637050 MAP3K15Q6ZN16 1313 aa23.04■■□□□ 1.28
CLN3-254ENST00000637050 SKAP1Q86WV1 359 aa23.04■■□□□ 1.28
CLN3-254ENST00000637050 LINC00116Q8NCU8 138 aa23.04■■□□□ 1.28
CLN3-254ENST00000637050 HDAC5Q9UQL6 1122 aa23.04■■□□□ 1.28
CLN3-254ENST00000637050 AFDNP55196 1824 aaKnown RBP23.04■■□□□ 1.28
CLN3-254ENST00000637050 MYH14Q7Z406 1995 aaKnown RBP23.04■■□□□ 1.28
CLN3-254ENST00000637050 ATP8B2P98198 1209 aa23.03■■□□□ 1.28
CLN3-254ENST00000637050 PDZRN3Q9UPQ7 1066 aa23.03■■□□□ 1.28
CLN3-254ENST00000637050 ATP5J2-PTCD1G3V325 749 aa23.03■■□□□ 1.28
CLN3-254ENST00000637050 HMMRO75330 724 aa23.03■■□□□ 1.28
CLN3-254ENST00000637050 POTEAQ6S8J7 498 aa23.03■■□□□ 1.28
CLN3-254ENST00000637050 DCTPP1Q9H773 170 aa23.03■■□□□ 1.28
CLN3-254ENST00000637050 CNTNAP4Q9C0A0 1308 aa23.02■■□□□ 1.28
CLN3-254ENST00000637050 TCIRG1Q13488 830 aa23.01■■□□□ 1.27
CLN3-254ENST00000637050 CCNL1Q9UK58 526 aaPredicted RBP23.01■■□□□ 1.27
CLN3-254ENST00000637050 ERVV-1B6SEH8 477 aa23■■□□□ 1.27
CLN3-254ENST00000637050 KCNQ4P56696 695 aa23■■□□□ 1.27
CLN3-254ENST00000637050 GIGYF2Q6Y7W6 1299 aaKnown RBP23■■□□□ 1.27
CLN3-254ENST00000637050 NPM2Q86SE8 214 aaKnown RBP23■■□□□ 1.27
CLN3-254ENST00000637050 ISCA1Q9BUE6 129 aa23■■□□□ 1.27
CLN3-254ENST00000637050 NUCB1Q02818 461 aa23■■□□□ 1.27
CLN3-254ENST00000637050 TRIM28Q13263 835 aaKnown RBP23■■□□□ 1.27
CLN3-254ENST00000637050 RC3H1Q5TC82 1133 aaKnown RBP23■■□□□ 1.27
CLN3-254ENST00000637050 DZIP3Q86Y13 1208 aaKnown RBP23■■□□□ 1.27
CLN3-254ENST00000637050 CCDC191Q8NCU4 936 aa23■■□□□ 1.27
CLN3-254ENST00000637050 PNMA6EA0A0J9YXQ4 647 aa22.99■■□□□ 1.27
CLN3-254ENST00000637050 TRIM37O94972 964 aa22.99■■□□□ 1.27
CLN3-254ENST00000637050 COL15A1P39059 1388 aa22.98■■□□□ 1.27
CLN3-254ENST00000637050 MTX1Q13505 466 aa22.98■■□□□ 1.27
CLN3-254ENST00000637050 SSH3Q8TE77 659 aa22.98■■□□□ 1.27
CLN3-254ENST00000637050 SUCLG2Q96I99 432 aa22.98■■□□□ 1.27
CLN3-254ENST00000637050 ARXQ96QS3 562 aa22.98■■□□□ 1.27
CLN3-254ENST00000637050 CWC25Q9NXE8 425 aaPredicted RBP22.98■■□□□ 1.27
CLN3-254ENST00000637050 TAF1LQ8IZX4 1826 aa22.97■■□□□ 1.27
CLN3-254ENST00000637050 HLFQ16534 295 aa22.97■■□□□ 1.27
CLN3-254ENST00000637050 KAZALD1Q96I82 304 aa22.97■■□□□ 1.27
CLN3-254ENST00000637050 TBC1D2BQ9UPU7 963 aa22.97■■□□□ 1.27
CLN3-254ENST00000637050 A0A087WZG4 1122 aa22.97■■□□□ 1.27
CLN3-254ENST00000637050 H7C1W4 665 aa22.97■■□□□ 1.27
CLN3-254ENST00000637050 CASP7P55210 303 aa22.97■■□□□ 1.27
CLN3-254ENST00000637050 POLA2Q14181 598 aa22.97■■□□□ 1.27
CLN3-254ENST00000637050 HSP90AB3PQ58FF7 597 aa22.97■■□□□ 1.27
CLN3-254ENST00000637050 PPP1R42Q7Z4L9 355 aa22.97■■□□□ 1.27
CLN3-254ENST00000637050 ANKRD36CQ5JPF3 1778 aa22.95■■□□□ 1.27
CLN3-254ENST00000637050 RGS3P49796 1198 aa22.95■■□□□ 1.26
CLN3-254ENST00000637050 UBE3BQ7Z3V4 1068 aa22.95■■□□□ 1.26
CLN3-254ENST00000637050 CHD1LQ86WJ1 897 aa22.95■■□□□ 1.26
CLN3-254ENST00000637050 NUP98P52948 1817 aa22.94■■□□□ 1.26
CLN3-254ENST00000637050 SRGAP3O43295 1099 aa22.93■■□□□ 1.26
CLN3-254ENST00000637050 CAMTA2O94983 1202 aa22.93■■□□□ 1.26
CLN3-254ENST00000637050 ANKRD45Q5TZF3 282 aa22.93■■□□□ 1.26
CLN3-254ENST00000637050 BICC1Q9H694 974 aaKnown RBP22.93■■□□□ 1.26
CLN3-254ENST00000637050 RPS6KA4O75676 772 aa22.93■■□□□ 1.26
CLN3-254ENST00000637050 LRRC4BQ9NT99 713 aa22.93■■□□□ 1.26
CLN3-254ENST00000637050 C4BP0C0L5 1744 aa22.92■■□□□ 1.26
CLN3-254ENST00000637050 SLC27A3Q5K4L6 730 aa22.92■■□□□ 1.26
CLN3-254ENST00000637050 PDE4AP27815 886 aa22.91■■□□□ 1.26
CLN3-254ENST00000637050 JARID2Q92833 1246 aaPredicted RBP22.91■■□□□ 1.26
CLN3-254ENST00000637050 LNPKQ9C0E8 428 aa22.91■■□□□ 1.26
CLN3-254ENST00000637050 EPHA10Q5JZY3 1008 aa22.9■■□□□ 1.26
CLN3-254ENST00000637050 BCORQ6W2J9 1755 aa22.9■■□□□ 1.26
CLN3-254ENST00000637050 NLRP10Q86W26 655 aa22.9■■□□□ 1.26
CLN3-254ENST00000637050 ZNF34Q8IZ26 560 aa22.9■■□□□ 1.26
CLN3-254ENST00000637050 RABL6Q3YEC7 729 aaPredicted RBP22.9■■□□□ 1.26
CLN3-254ENST00000637050 RGL2O15211 777 aa22.89■■□□□ 1.25
CLN3-254ENST00000637050 GNPATO15228 680 aa22.89■■□□□ 1.25
CLN3-254ENST00000637050 PCCAP05165 728 aaPredicted RBP22.89■■□□□ 1.25
CLN3-254ENST00000637050 EXOC6BQ9Y2D4 811 aa22.89■■□□□ 1.25
CLN3-254ENST00000637050 GPTP24298 496 aa22.88■■□□□ 1.25
CLN3-254ENST00000637050 ZBTB38Q8NAP3 1195 aaPredicted RBP22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms