RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 EIF5P55010 431 aaKnown RBP17.84■□□□□ 0.45
CLN3-242ENST00000635958 BEND3Q5T5X7 828 aa17.84■□□□□ 0.45
CLN3-242ENST00000635958 SLC4A10Q6U841 1118 aa17.84■□□□□ 0.45
CLN3-242ENST00000635958 LINC00116Q8NCU8 138 aa17.84■□□□□ 0.45
CLN3-242ENST00000635958 MYH14Q7Z406 1995 aaKnown RBP17.84■□□□□ 0.45
CLN3-242ENST00000635958 CNTNAP4Q9C0A0 1308 aa17.84■□□□□ 0.45
CLN3-242ENST00000635958 IBTKQ9P2D0 1353 aaPredicted RBP17.84■□□□□ 0.45
CLN3-242ENST00000635958 SLC27A3Q5K4L6 730 aa17.84■□□□□ 0.45
CLN3-242ENST00000635958 TTLL7Q6ZT98 887 aa17.84■□□□□ 0.45
CLN3-242ENST00000635958 N4BP2Q86UW6 1770 aaPredicted RBP17.83■□□□□ 0.44
CLN3-242ENST00000635958 RIC3Q7Z5B4 369 aa17.83■□□□□ 0.44
CLN3-242ENST00000635958 HMGB2P26583 209 aaKnown RBP17.82■□□□□ 0.44
CLN3-242ENST00000635958 METTL22Q9BUU2 404 aaPredicted RBP17.82■□□□□ 0.44
CLN3-242ENST00000635958 LINS1Q8NG48 757 aa17.82■□□□□ 0.44
CLN3-242ENST00000635958 SRCIN1Q9C0H9 1055 aa17.82■□□□□ 0.44
CLN3-242ENST00000635958 ALDH1L1O75891 902 aa17.81■□□□□ 0.44
CLN3-242ENST00000635958 KCNQ4P56696 695 aa17.81■□□□□ 0.44
CLN3-242ENST00000635958 LRRC4BQ9NT99 713 aa17.81■□□□□ 0.44
CLN3-242ENST00000635958 PROM2Q8N271 834 aa17.8■□□□□ 0.44
CLN3-242ENST00000635958 TAF1LQ8IZX4 1826 aa17.8■□□□□ 0.44
CLN3-242ENST00000635958 APBA3O96018 575 aa17.79■□□□□ 0.44
CLN3-242ENST00000635958 MAP3K15Q6ZN16 1313 aa17.79■□□□□ 0.44
CLN3-242ENST00000635958 ERVV-1B6SEH8 477 aa17.79■□□□□ 0.44
CLN3-242ENST00000635958 RPS6KA4O75676 772 aa17.79■□□□□ 0.44
CLN3-242ENST00000635958 TXNRD1Q16881 649 aa17.79■□□□□ 0.44
CLN3-242ENST00000635958 IGKV5-2P06315 115 aa17.78■□□□□ 0.44
CLN3-242ENST00000635958 NEXNQ0ZGT2 675 aa17.78■□□□□ 0.44
CLN3-242ENST00000635958 KIF6Q6ZMV9 814 aa17.78■□□□□ 0.44
CLN3-242ENST00000635958 USP44Q9H0E7 712 aa17.78■□□□□ 0.44
CLN3-242ENST00000635958 ARFGEF2Q9Y6D5 1785 aa17.77■□□□□ 0.44
CLN3-242ENST00000635958 NUP188Q5SRE5 1749 aa17.77■□□□□ 0.44
CLN3-242ENST00000635958 TNS1Q9HBL0 1735 aaKnown RBP17.77■□□□□ 0.44
CLN3-242ENST00000635958 NPM2Q86SE8 214 aaKnown RBP17.77■□□□□ 0.44
CLN3-242ENST00000635958 MEIS3Q99687 375 aa17.77■□□□□ 0.44
CLN3-242ENST00000635958 PCDHB15Q9Y5E8 787 aa17.77■□□□□ 0.44
CLN3-242ENST00000635958 GNAI3P08754 354 aa17.77■□□□□ 0.43
CLN3-242ENST00000635958 ANP32AP39687 249 aaKnown RBP17.77■□□□□ 0.43
CLN3-242ENST00000635958 DZIP3Q86Y13 1208 aaKnown RBP17.77■□□□□ 0.43
CLN3-242ENST00000635958 NOP58Q9Y2X3 529 aaKnown RBP17.77■□□□□ 0.43
CLN3-242ENST00000635958 ZNF330Q9Y3S2 320 aaPredicted RBP17.77■□□□□ 0.43
CLN3-242ENST00000635958 A0A087WZG4 1122 aa17.76■□□□□ 0.43
CLN3-242ENST00000635958 NEURL1BA8MQ27 555 aa17.76■□□□□ 0.43
CLN3-242ENST00000635958 RGL2O15211 777 aa17.76■□□□□ 0.43
CLN3-242ENST00000635958 TRIM28Q13263 835 aaKnown RBP17.76■□□□□ 0.43
CLN3-242ENST00000635958 GIGYF2Q6Y7W6 1299 aaKnown RBP17.76■□□□□ 0.43
CLN3-242ENST00000635958 CCDC125Q86Z20 511 aa17.76■□□□□ 0.43
CLN3-242ENST00000635958 MYD88Q99836 296 aa17.76■□□□□ 0.43
CLN3-242ENST00000635958 ZBTB3Q9H5J0 574 aa17.76■□□□□ 0.43
CLN3-242ENST00000635958 UTYO14607 1347 aa17.75■□□□□ 0.43
CLN3-242ENST00000635958 TCIRG1Q13488 830 aa17.75■□□□□ 0.43
CLN3-242ENST00000635958 CWF19L2Q2TBE0 894 aaKnown RBP17.75■□□□□ 0.43
CLN3-242ENST00000635958 RGPD3A6NKT7 1758 aaPredicted RBP17.75■□□□□ 0.43
CLN3-242ENST00000635958 RGPD4Q7Z3J3 1758 aa17.75■□□□□ 0.43
CLN3-242ENST00000635958 C4BP0C0L5 1744 aa17.75■□□□□ 0.43
CLN3-242ENST00000635958 ISCA1Q9BUE6 129 aa17.75■□□□□ 0.43
CLN3-242ENST00000635958 TBC1D2BQ9UPU7 963 aa17.75■□□□□ 0.43
CLN3-242ENST00000635958 COL15A1P39059 1388 aa17.74■□□□□ 0.43
CLN3-242ENST00000635958 GCKRQ14397 625 aa17.74■□□□□ 0.43
CLN3-242ENST00000635958 HSP90AB3PQ58FF7 597 aa17.74■□□□□ 0.43
CLN3-242ENST00000635958 RTCBQ9Y3I0 505 aaKnown RBP17.74■□□□□ 0.43
CLN3-242ENST00000635958 GNPATO15228 680 aa17.73■□□□□ 0.43
CLN3-242ENST00000635958 CAMTA2O94983 1202 aa17.73■□□□□ 0.43
CLN3-242ENST00000635958 HLFQ16534 295 aa17.73■□□□□ 0.43
CLN3-242ENST00000635958 GNAI2P04899 355 aa17.72■□□□□ 0.43
CLN3-242ENST00000635958 CCDC191Q8NCU4 936 aa17.72■□□□□ 0.43
CLN3-242ENST00000635958 ATP5J2-PTCD1G3V325 749 aa17.72■□□□□ 0.43
CLN3-242ENST00000635958 GRM8O00222 908 aa17.72■□□□□ 0.43
CLN3-242ENST00000635958 ADRA2BP18089 450 aa17.72■□□□□ 0.43
CLN3-242ENST00000635958 HDAC1Q13547 482 aaPredicted RBP17.72■□□□□ 0.43
CLN3-242ENST00000635958 ARXQ96QS3 562 aa17.72■□□□□ 0.43
CLN3-242ENST00000635958 CAMKK2Q96RR4 588 aa17.72■□□□□ 0.43
CLN3-242ENST00000635958 NBPF7P0C2Y1 421 aaPredicted RBP17.71■□□□□ 0.43
CLN3-242ENST00000635958 UBTFL1P0CB47 393 aaPredicted RBP17.71■□□□□ 0.43
CLN3-242ENST00000635958 CLEC4GQ6UXB4 293 aa17.71■□□□□ 0.43
CLN3-242ENST00000635958 RPAP2Q8IXW5 612 aaPredicted RBP17.71■□□□□ 0.43
CLN3-242ENST00000635958 AK7Q96M32 723 aa17.71■□□□□ 0.43
CLN3-242ENST00000635958 IPO9Q96P70 1041 aaKnown RBP17.71■□□□□ 0.43
CLN3-242ENST00000635958 BCL11AQ9H165 835 aa17.71■□□□□ 0.43
CLN3-242ENST00000635958 C9orf78Q9NZ63 289 aaPredicted RBP17.71■□□□□ 0.43
CLN3-242ENST00000635958 HDAC5Q9UQL6 1122 aa17.71■□□□□ 0.43
CLN3-242ENST00000635958 C1orf115Q9H7X2 142 aa17.7■□□□□ 0.42
CLN3-242ENST00000635958 CWC25Q9NXE8 425 aaPredicted RBP17.7■□□□□ 0.42
CLN3-242ENST00000635958 NARFQ9UHQ1 456 aa17.7■□□□□ 0.42
CLN3-242ENST00000635958 KDM2BQ8NHM5 1336 aa17.7■□□□□ 0.42
CLN3-242ENST00000635958 NUP98P52948 1817 aa17.7■□□□□ 0.42
CLN3-242ENST00000635958 IGHDP01880 384 aa17.7■□□□□ 0.42
CLN3-242ENST00000635958 AMIGO3Q86WK7 504 aa17.7■□□□□ 0.42
CLN3-242ENST00000635958 ZNF34Q8IZ26 560 aa17.7■□□□□ 0.42
CLN3-242ENST00000635958 ARHGEF1Q92888 912 aaKnown RBP17.7■□□□□ 0.42
CLN3-242ENST00000635958 RWDD1Q9H446 243 aaPredicted RBP17.7■□□□□ 0.42
CLN3-242ENST00000635958 H7C1W4 665 aa17.69■□□□□ 0.42
CLN3-242ENST00000635958 TRAPPC3LQ5T215 181 aa17.69■□□□□ 0.42
CLN3-242ENST00000635958 SIRT2Q8IXJ6 389 aa17.69■□□□□ 0.42
CLN3-242ENST00000635958 ANKRD44Q8N8A2 993 aa17.69■□□□□ 0.42
CLN3-242ENST00000635958 AKT1S1Q96B36 256 aa17.69■□□□□ 0.42
CLN3-242ENST00000635958 SSFA2P28290 1259 aa17.68■□□□□ 0.42
CLN3-242ENST00000635958 CASP7P55210 303 aa17.68■□□□□ 0.42
CLN3-242ENST00000635958 CEP85Q6P2H3 762 aa17.68■□□□□ 0.42
CLN3-242ENST00000635958 UBR3Q6ZT12 1888 aa17.68■□□□□ 0.42
CLN3-242ENST00000635958 SF3B2Q13435 895 aaKnown RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms