RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MST1RQ04912 1400 aa15.41■□□□□ 0.06
LINC00540-203ENST00000631321 LINS1Q8NG48 757 aa15.41■□□□□ 0.06
LINC00540-203ENST00000631321 C9orf78Q9NZ63 289 aaPredicted RBP15.41■□□□□ 0.06
LINC00540-203ENST00000631321 LIMCH1Q9UPQ0 1083 aa15.41■□□□□ 0.06
LINC00540-203ENST00000631321 SYCE3A1L190 88 aa15.4■□□□□ 0.06
LINC00540-203ENST00000631321 GPATCH3Q96I76 525 aa15.4■□□□□ 0.06
LINC00540-203ENST00000631321 NAP1L5Q96NT1 182 aaPredicted RBP15.4■□□□□ 0.06
LINC00540-203ENST00000631321 AK2P54819 239 aa15.39■□□□□ 0.05
LINC00540-203ENST00000631321 CWC27Q6UX04 472 aaKnown RBP15.39■□□□□ 0.05
LINC00540-203ENST00000631321 RUFY3Q7L099 469 aa15.39■□□□□ 0.05
LINC00540-203ENST00000631321 ORAI2Q96SN7 254 aa15.39■□□□□ 0.05
LINC00540-203ENST00000631321 SIPA1L3O60292 1781 aaPredicted RBP15.39■□□□□ 0.05
LINC00540-203ENST00000631321 SYAP1Q96A49 352 aaPredicted RBP15.39■□□□□ 0.05
LINC00540-203ENST00000631321 TM6SF1Q9BZW5 370 aa15.39■□□□□ 0.05
LINC00540-203ENST00000631321 DDX21Q9NR30 783 aaKnown RBP eCLIP15.39■□□□□ 0.05
LINC00540-203ENST00000631321 DIAPH3Q9NSV4 1193 aa15.39■□□□□ 0.05
LINC00540-203ENST00000631321 GRM8O00222 908 aa15.38■□□□□ 0.05
LINC00540-203ENST00000631321 EVI5LQ96CN4 794 aa15.38■□□□□ 0.05
LINC00540-203ENST00000631321 KAZALD1Q96I82 304 aa15.38■□□□□ 0.05
LINC00540-203ENST00000631321 SPG7Q9UQ90 795 aa15.38■□□□□ 0.05
LINC00540-203ENST00000631321 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.38■□□□□ 0.05
LINC00540-203ENST00000631321 NPHP4O75161 1426 aaPredicted RBP15.38■□□□□ 0.05
LINC00540-203ENST00000631321 TRPM3Q9HCF6 1732 aaPredicted RBP15.38■□□□□ 0.05
LINC00540-203ENST00000631321 DDX58O95786 925 aaKnown RBP15.37■□□□□ 0.05
LINC00540-203ENST00000631321 IFIT2P09913 472 aaKnown RBP15.37■□□□□ 0.05
LINC00540-203ENST00000631321 PDIA6Q15084 440 aa15.37■□□□□ 0.05
LINC00540-203ENST00000631321 CWF19L2Q2TBE0 894 aaKnown RBP15.37■□□□□ 0.05
LINC00540-203ENST00000631321 SNRKQ9NRH2 765 aa15.37■□□□□ 0.05
LINC00540-203ENST00000631321 PA2G4Q9UQ80 394 aaKnown RBP15.37■□□□□ 0.05
LINC00540-203ENST00000631321 AXIN2Q9Y2T1 843 aa15.37■□□□□ 0.05
LINC00540-203ENST00000631321 PRAMEF22A3QJZ6 481 aa15.37■□□□□ 0.05
LINC00540-203ENST00000631321 VPS53Q5VIR6 699 aa15.37■□□□□ 0.05
LINC00540-203ENST00000631321 USP48Q86UV5 1035 aa15.37■□□□□ 0.05
LINC00540-203ENST00000631321 SUCLG2Q96I99 432 aa15.37■□□□□ 0.05
LINC00540-203ENST00000631321 NOL7Q9UMY1 257 aaKnown RBP15.37■□□□□ 0.05
LINC00540-203ENST00000631321 ZSCAN22P10073 491 aaPredicted RBP15.36■□□□□ 0.05
LINC00540-203ENST00000631321 PTH1RQ03431 593 aa15.36■□□□□ 0.05
LINC00540-203ENST00000631321 ZSWIM6Q9HCJ5 1215 aa15.36■□□□□ 0.05
LINC00540-203ENST00000631321 PHF14O94880 888 aa15.36■□□□□ 0.05
LINC00540-203ENST00000631321 SETD1BQ9UPS6 1966 aaKnown RBP15.36■□□□□ 0.05
LINC00540-203ENST00000631321 HIP1O00291 1037 aa15.35■□□□□ 0.05
LINC00540-203ENST00000631321 GADD45BO75293 160 aaPredicted RBP15.35■□□□□ 0.05
LINC00540-203ENST00000631321 CASTP20810 708 aaKnown RBP15.35■□□□□ 0.05
LINC00540-203ENST00000631321 AACSQ86V21 672 aa15.35■□□□□ 0.05
LINC00540-203ENST00000631321 TSPY26PQ9H489 355 aa15.35■□□□□ 0.05
LINC00540-203ENST00000631321 STX6O43752 255 aa15.35■□□□□ 0.05
LINC00540-203ENST00000631321 SASH1O94885 1247 aa15.35■□□□□ 0.05
LINC00540-203ENST00000631321 XPCQ01831 940 aaPredicted RBP15.35■□□□□ 0.05
LINC00540-203ENST00000631321 NECTIN1Q15223 517 aa15.35■□□□□ 0.05
LINC00540-203ENST00000631321 ZSCAN31Q96LW9 406 aaPredicted RBP15.35■□□□□ 0.05
LINC00540-203ENST00000631321 BICC1Q9H694 974 aaKnown RBP15.35■□□□□ 0.05
LINC00540-203ENST00000631321 SH2B1Q9NRF2 756 aaPredicted RBP15.35■□□□□ 0.05
LINC00540-203ENST00000631321 ERBB3P21860 1342 aa15.34■□□□□ 0.05
LINC00540-203ENST00000631321 MRC1P22897 1456 aa15.34■□□□□ 0.05
LINC00540-203ENST00000631321 SYT1P21579 422 aa15.34■□□□□ 0.05
LINC00540-203ENST00000631321 MSNP26038 577 aaKnown RBP15.34■□□□□ 0.05
LINC00540-203ENST00000631321 KLHL34Q8N239 644 aa15.34■□□□□ 0.05
LINC00540-203ENST00000631321 CCDC171Q6TFL3 1326 aa15.34■□□□□ 0.05
LINC00540-203ENST00000631321 IGKV5-2P06315 115 aa15.34■□□□□ 0.05
LINC00540-203ENST00000631321 KRT28Q7Z3Y7 464 aa15.34■□□□□ 0.05
LINC00540-203ENST00000631321 PDRG1Q9NUG6 133 aa15.34■□□□□ 0.05
LINC00540-203ENST00000631321 SMC3Q9UQE7 1217 aa15.34■□□□□ 0.05
LINC00540-203ENST00000631321 ZNF500O60304 480 aaPredicted RBP15.33■□□□□ 0.04
LINC00540-203ENST00000631321 OFD1O75665 1012 aa15.33■□□□□ 0.04
LINC00540-203ENST00000631321 MCM5P33992 734 aa15.33■□□□□ 0.04
LINC00540-203ENST00000631321 G3BP1Q13283 466 aaKnown RBP eCLIP15.33■□□□□ 0.04
LINC00540-203ENST00000631321 PRPF40BQ6NWY9 871 aaKnown RBP15.33■□□□□ 0.04
LINC00540-203ENST00000631321 LARP1Q6PKG0 1096 aaKnown RBP15.33■□□□□ 0.04
LINC00540-203ENST00000631321 EAF2Q96CJ1 260 aaPredicted RBP15.33■□□□□ 0.04
LINC00540-203ENST00000631321 GDPD2Q9HCC8 539 aa15.33■□□□□ 0.04
LINC00540-203ENST00000631321 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.33■□□□□ 0.04
LINC00540-203ENST00000631321 CYP46A1Q9Y6A2 500 aa15.33■□□□□ 0.04
LINC00540-203ENST00000631321 F13A1P00488 732 aa15.33■□□□□ 0.04
LINC00540-203ENST00000631321 ADCK5Q3MIX3 580 aa15.33■□□□□ 0.04
LINC00540-203ENST00000631321 ZNF790Q6PG37 636 aa15.33■□□□□ 0.04
LINC00540-203ENST00000631321 MAP4K1Q92918 833 aa15.33■□□□□ 0.04
LINC00540-203ENST00000631321 JAKMIP1Q96N16 626 aaKnown RBP15.33■□□□□ 0.04
LINC00540-203ENST00000631321 ATP6V1DQ9Y5K8 247 aa15.33■□□□□ 0.04
LINC00540-203ENST00000631321 KIF1AQ12756 1690 aa15.32■□□□□ 0.04
LINC00540-203ENST00000631321 ABCC6O95255 1503 aa15.32■□□□□ 0.04
LINC00540-203ENST00000631321 PLEKHG2Q9H7P9 1386 aa15.32■□□□□ 0.04
LINC00540-203ENST00000631321 LARGE1O95461 756 aa15.32■□□□□ 0.04
LINC00540-203ENST00000631321 SLC52A2Q9HAB3 445 aa15.32■□□□□ 0.04
LINC00540-203ENST00000631321 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.32■□□□□ 0.04
LINC00540-203ENST00000631321 C1orf167Q5SNV9 1468 aa15.32■□□□□ 0.04
LINC00540-203ENST00000631321 KDM6AO15550 1401 aaPredicted RBP15.32■□□□□ 0.04
LINC00540-203ENST00000631321 CPA1P15085 419 aa15.32■□□□□ 0.04
LINC00540-203ENST00000631321 UBE2HP62256 183 aa15.31■□□□□ 0.04
LINC00540-203ENST00000631321 CCDC183Q5T5S1 534 aa15.31■□□□□ 0.04
LINC00540-203ENST00000631321 FAM184AQ8NB25 1140 aa15.31■□□□□ 0.04
LINC00540-203ENST00000631321 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.31■□□□□ 0.04
LINC00540-203ENST00000631321 CNPY2Q9Y2B0 182 aa15.31■□□□□ 0.04
LINC00540-203ENST00000631321 RBM8AQ9Y5S9 174 aaKnown RBP15.31■□□□□ 0.04
LINC00540-203ENST00000631321 NPHP3Q7Z494 1330 aa15.31■□□□□ 0.04
LINC00540-203ENST00000631321 NEURL1BA8MQ27 555 aa15.31■□□□□ 0.04
LINC00540-203ENST00000631321 LETM1O95202 739 aaPredicted RBP15.31■□□□□ 0.04
LINC00540-203ENST00000631321 TPM2P07951 284 aa15.31■□□□□ 0.04
LINC00540-203ENST00000631321 ZKSCAN1P17029 563 aaPredicted RBP15.31■□□□□ 0.04
LINC00540-203ENST00000631321 CREB3L3Q68CJ9 461 aa15.31■□□□□ 0.04
LINC00540-203ENST00000631321 LMOD2Q6P5Q4 547 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms