RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 COL15A1P39059 1388 aa27.1■■□□□ 1.93
PNKP-220ENST00000627232 ITGB4P16144 1822 aa27.1■■□□□ 1.93
PNKP-220ENST00000627232 KIF2CQ99661 725 aa27.1■■□□□ 1.93
PNKP-220ENST00000627232 HSCBQ8IWL3 235 aa27.09■■□□□ 1.93
PNKP-220ENST00000627232 KAZALD1Q96I82 304 aa27.09■■□□□ 1.93
PNKP-220ENST00000627232 IL1RAPL2Q9NP60 686 aa27.09■■□□□ 1.93
PNKP-220ENST00000627232 TMOD3Q9NYL9 352 aa27.09■■□□□ 1.93
PNKP-220ENST00000627232 REC8O95072 547 aa27.08■■□□□ 1.93
PNKP-220ENST00000627232 USP26Q9BXU7 913 aa27.08■■□□□ 1.93
PNKP-220ENST00000627232 AK9Q5TCS8 1911 aa27.07■■□□□ 1.92
PNKP-220ENST00000627232 USP42Q9H9J4 1324 aaKnown RBP27.07■■□□□ 1.92
PNKP-220ENST00000627232 NBPF26B4DH59 902 aa27.07■■□□□ 1.92
PNKP-220ENST00000627232 NBPF14Q5TI25 921 aa27.07■■□□□ 1.92
PNKP-220ENST00000627232 NBPF10Q6P3W6 841 aaKnown RBP27.07■■□□□ 1.92
PNKP-220ENST00000627232 NBPF15Q8N660 670 aa27.07■■□□□ 1.92
PNKP-220ENST00000627232 ERC2O15083 957 aa27.06■■□□□ 1.92
PNKP-220ENST00000627232 BICC1Q9H694 974 aaKnown RBP27.06■■□□□ 1.92
PNKP-220ENST00000627232 NRAPQ86VF7 1730 aa27.06■■□□□ 1.92
PNKP-220ENST00000627232 OS9Q13438 667 aaPredicted RBP27.06■■□□□ 1.92
PNKP-220ENST00000627232 PIP4K2AP48426 406 aaPredicted RBP27.05■■□□□ 1.92
PNKP-220ENST00000627232 ANTXR1Q9H6X2 564 aa27.05■■□□□ 1.92
PNKP-220ENST00000627232 VSIG10Q8N0Z9 540 aa27.04■■□□□ 1.92
PNKP-220ENST00000627232 TEX13AQ9BXU3 409 aaPredicted RBP27.04■■□□□ 1.92
PNKP-220ENST00000627232 TTC41PQ6P2S7 1318 aa27.03■■□□□ 1.92
PNKP-220ENST00000627232 TSHZ3Q63HK5 1081 aa27.03■■□□□ 1.92
PNKP-220ENST00000627232 NUTM1Q86Y26 1132 aa27.03■■□□□ 1.92
PNKP-220ENST00000627232 CLASRPQ8N2M8 674 aaKnown RBP27.02■■□□□ 1.92
PNKP-220ENST00000627232 PTCD1O75127 700 aaKnown RBP27.01■■□□□ 1.91
PNKP-220ENST00000627232 NFKBIBQ15653 356 aa27.01■■□□□ 1.91
PNKP-220ENST00000627232 PI4K2BQ8TCG2 481 aa27.01■■□□□ 1.91
PNKP-220ENST00000627232 CDCA7Q9BWT1 371 aaPredicted RBP27.01■■□□□ 1.91
PNKP-220ENST00000627232 TRIM6-TRIM34B2RNG4 842 aa27■■□□□ 1.91
PNKP-220ENST00000627232 CHMLP26374 656 aa27■■□□□ 1.91
PNKP-220ENST00000627232 G3BP1Q13283 466 aaKnown RBP eCLIP27■■□□□ 1.91
PNKP-220ENST00000627232 RABEP1Q15276 862 aa27■■□□□ 1.91
PNKP-220ENST00000627232 ESYT1Q9BSJ8 1104 aa27■■□□□ 1.91
PNKP-220ENST00000627232 EXOC5O00471 708 aa26.99■■□□□ 1.91
PNKP-220ENST00000627232 A1BGP04217 495 aa26.99■■□□□ 1.91
PNKP-220ENST00000627232 PIGBQ92521 554 aa26.99■■□□□ 1.91
PNKP-220ENST00000627232 RILPL2Q969X0 211 aa26.99■■□□□ 1.91
PNKP-220ENST00000627232 PA2G4Q9UQ80 394 aaKnown RBP26.99■■□□□ 1.91
PNKP-220ENST00000627232 NWD2Q9ULI1 1742 aa26.98■■□□□ 1.91
PNKP-220ENST00000627232 RABL6Q3YEC7 729 aaPredicted RBP26.98■■□□□ 1.91
PNKP-220ENST00000627232 SLKQ9H2G2 1235 aaPredicted RBP26.98■■□□□ 1.91
PNKP-220ENST00000627232 BCL9O00512 1426 aa26.98■■□□□ 1.91
PNKP-220ENST00000627232 TJP1Q07157 1748 aa26.97■■□□□ 1.91
PNKP-220ENST00000627232 CASP7P55210 303 aa26.97■■□□□ 1.91
PNKP-220ENST00000627232 THRAP3Q9Y2W1 955 aaKnown RBP26.97■■□□□ 1.91
PNKP-220ENST00000627232 EPB41L2O43491 1005 aaKnown RBP26.96■■□□□ 1.91
PNKP-220ENST00000627232 GLRX3O76003 335 aaKnown RBP26.96■■□□□ 1.91
PNKP-220ENST00000627232 TTLL7Q6ZT98 887 aa26.96■■□□□ 1.91
PNKP-220ENST00000627232 GPATCH3Q96I76 525 aa26.96■■□□□ 1.91
PNKP-220ENST00000627232 ATG3Q9NT62 314 aa26.96■■□□□ 1.91
PNKP-220ENST00000627232 A0A087WZG4 1122 aa26.95■■□□□ 1.91
PNKP-220ENST00000627232 EPHA10Q5JZY3 1008 aa26.95■■□□□ 1.91
PNKP-220ENST00000627232 COPRSQ9NQ92 184 aa26.95■■□□□ 1.91
PNKP-220ENST00000627232 ATP5J2-PTCD1G3V325 749 aa26.95■■□□□ 1.9
PNKP-220ENST00000627232 H7C1W4 665 aa26.95■■□□□ 1.9
PNKP-220ENST00000627232 UBE3BQ7Z3V4 1068 aa26.95■■□□□ 1.9
PNKP-220ENST00000627232 UNC5CLQ8IV45 518 aa26.95■■□□□ 1.9
PNKP-220ENST00000627232 CNTROBQ8N137 903 aa26.95■■□□□ 1.9
PNKP-220ENST00000627232 ASAP1Q9ULH1 1129 aa26.95■■□□□ 1.9
PNKP-220ENST00000627232 TOM1O60784 492 aa26.94■■□□□ 1.9
PNKP-220ENST00000627232 SASH1O94885 1247 aa26.94■■□□□ 1.9
PNKP-220ENST00000627232 IFIT2P09913 472 aaKnown RBP26.94■■□□□ 1.9
PNKP-220ENST00000627232 ECHDC1Q9NTX5 307 aa26.94■■□□□ 1.9
PNKP-220ENST00000627232 CWC25Q9NXE8 425 aaPredicted RBP26.94■■□□□ 1.9
PNKP-220ENST00000627232 SPATA31A1Q5TZJ5 1347 aa26.94■■□□□ 1.9
PNKP-220ENST00000627232 CCDC191Q8NCU4 936 aa26.93■■□□□ 1.9
PNKP-220ENST00000627232 RFX5P48382 616 aaPredicted RBP26.92■■□□□ 1.9
PNKP-220ENST00000627232 DOT1LQ8TEK3 1739 aa26.92■■□□□ 1.9
PNKP-220ENST00000627232 K7ELQ4 463 aaPredicted RBP26.91■■□□□ 1.9
PNKP-220ENST00000627232 STARD3NLO95772 234 aa26.91■■□□□ 1.9
PNKP-220ENST00000627232 CHMP5Q9NZZ3 219 aa26.91■■□□□ 1.9
PNKP-220ENST00000627232 AACSQ86V21 672 aa26.9■■□□□ 1.9
PNKP-220ENST00000627232 DNAJC10Q8IXB1 793 aa26.9■■□□□ 1.9
PNKP-220ENST00000627232 RBM42Q9BTD8 480 aaKnown RBP26.9■■□□□ 1.9
PNKP-220ENST00000627232 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.89■■□□□ 1.9
PNKP-220ENST00000627232 ADAMTS2O95450 1211 aa26.89■■□□□ 1.89
PNKP-220ENST00000627232 MCCP23508 829 aa26.89■■□□□ 1.89
PNKP-220ENST00000627232 SLIT2O94813 1529 aa26.88■■□□□ 1.89
PNKP-220ENST00000627232 PTPN12Q05209 780 aaKnown RBP26.87■■□□□ 1.89
PNKP-220ENST00000627232 EAF2Q96CJ1 260 aaPredicted RBP26.87■■□□□ 1.89
PNKP-220ENST00000627232 ISCA1Q9BUE6 129 aa26.87■■□□□ 1.89
PNKP-220ENST00000627232 ZBTB3Q9H5J0 574 aa26.87■■□□□ 1.89
PNKP-220ENST00000627232 CD2BP2O95400 341 aaKnown RBP26.86■■□□□ 1.89
PNKP-220ENST00000627232 DDIT3P35638 169 aa26.86■■□□□ 1.89
PNKP-220ENST00000627232 ANAPC15P60006 121 aa26.86■■□□□ 1.89
PNKP-220ENST00000627232 FOXO4P98177 505 aa26.86■■□□□ 1.89
PNKP-220ENST00000627232 TRIM28Q13263 835 aaKnown RBP26.86■■□□□ 1.89
PNKP-220ENST00000627232 TCIRG1Q13488 830 aa26.86■■□□□ 1.89
PNKP-220ENST00000627232 SPRYD3Q8NCJ5 442 aa26.86■■□□□ 1.89
PNKP-220ENST00000627232 JARID2Q92833 1246 aaPredicted RBP26.86■■□□□ 1.89
PNKP-220ENST00000627232 IL17RAQ96F46 866 aa26.86■■□□□ 1.89
PNKP-220ENST00000627232 CIZ1Q9ULV3 898 aaPredicted RBP26.86■■□□□ 1.89
PNKP-220ENST00000627232 SPATA31A5Q5VU36 1347 aa26.85■■□□□ 1.89
PNKP-220ENST00000627232 SPATA31A7Q8IWB4 1347 aa26.85■■□□□ 1.89
PNKP-220ENST00000627232 KIF6Q6ZMV9 814 aa26.85■■□□□ 1.89
PNKP-220ENST00000627232 SIL1Q9H173 461 aa26.85■■□□□ 1.89
PNKP-220ENST00000627232 IL27Q8NEV9 243 aa26.85■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms