RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 DCTN1Q14203 1278 aa31.71■■■□□ 2.67
CPSF1-214ENST00000622776 STYK1Q6J9G0 422 aa31.71■■■□□ 2.67
CPSF1-214ENST00000622776 CLEC4GQ6UXB4 293 aa31.71■■■□□ 2.67
CPSF1-214ENST00000622776 TIAM2Q8IVF5 1701 aa31.71■■■□□ 2.67
CPSF1-214ENST00000622776 HTATSF1O43719 755 aaKnown RBP31.7■■■□□ 2.67
CPSF1-214ENST00000622776 SRGNP10124 158 aa31.7■■■□□ 2.67
CPSF1-214ENST00000622776 DPY19L2Q6NUT2 758 aa31.7■■■□□ 2.67
CPSF1-214ENST00000622776 BCORQ6W2J9 1755 aa31.69■■■□□ 2.66
CPSF1-214ENST00000622776 ERFEQ4G0M1 354 aa31.69■■■□□ 2.66
CPSF1-214ENST00000622776 FER1L6Q2WGJ9 1857 aa31.69■■■□□ 2.66
CPSF1-214ENST00000622776 JMYQ8N9B5 988 aa31.68■■■□□ 2.66
CPSF1-214ENST00000622776 MASTLQ96GX5 879 aa31.68■■■□□ 2.66
CPSF1-214ENST00000622776 LTBP3Q9NS15 1303 aa31.68■■■□□ 2.66
CPSF1-214ENST00000622776 POTECB2RU33 542 aa31.67■■■□□ 2.66
CPSF1-214ENST00000622776 PRPF40BQ6NWY9 871 aaKnown RBP31.67■■■□□ 2.66
CPSF1-214ENST00000622776 NBPF5PQ86XG9 351 aaPredicted RBP31.67■■■□□ 2.66
CPSF1-214ENST00000622776 TAOK3Q9H2K8 898 aa31.67■■■□□ 2.66
CPSF1-214ENST00000622776 ZNF652Q9Y2D9 606 aa31.67■■■□□ 2.66
CPSF1-214ENST00000622776 SLX4Q8IY92 1834 aa31.66■■■□□ 2.66
CPSF1-214ENST00000622776 NBPF26B4DH59 902 aa31.66■■■□□ 2.66
CPSF1-214ENST00000622776 NBPF10Q6P3W6 841 aaKnown RBP31.66■■■□□ 2.66
CPSF1-214ENST00000622776 NBPF15Q8N660 670 aa31.66■■■□□ 2.66
CPSF1-214ENST00000622776 DICER1Q9UPY3 1922 aaKnown RBP31.65■■■□□ 2.66
CPSF1-214ENST00000622776 TAF7Q15545 349 aaPredicted RBP31.64■■■□□ 2.66
CPSF1-214ENST00000622776 SOGA3Q5TF21 947 aa31.64■■■□□ 2.66
CPSF1-214ENST00000622776 RGL2O15211 777 aa31.62■■■□□ 2.65
CPSF1-214ENST00000622776 NIP7Q9Y221 180 aaKnown RBP eCLIP31.61■■■□□ 2.65
CPSF1-214ENST00000622776 TPTE2Q6XPS3 522 aa31.6■■■□□ 2.65
CPSF1-214ENST00000622776 MIS18AQ9NYP9 233 aa31.6■■■□□ 2.65
CPSF1-214ENST00000622776 NPR1P16066 1061 aa31.59■■■□□ 2.65
CPSF1-214ENST00000622776 C7orf43Q8WVR3 580 aa31.59■■■□□ 2.65
CPSF1-214ENST00000622776 CACNA1SQ13698 1873 aa31.59■■■□□ 2.65
CPSF1-214ENST00000622776 KLRG2A4D1S0 409 aaPredicted RBP31.58■■■□□ 2.65
CPSF1-214ENST00000622776 ARFGEF2Q9Y6D5 1785 aa31.57■■■□□ 2.64
CPSF1-214ENST00000622776 DDNO94850 711 aaPredicted RBP31.56■■■□□ 2.64
CPSF1-214ENST00000622776 NEFMP07197 916 aa31.56■■■□□ 2.64
CPSF1-214ENST00000622776 HLFQ16534 295 aa31.56■■■□□ 2.64
CPSF1-214ENST00000622776 CCDC93Q567U6 631 aa31.56■■■□□ 2.64
CPSF1-214ENST00000622776 FAM177BA6PVY3 158 aa31.55■■■□□ 2.64
CPSF1-214ENST00000622776 PCNTO95613 3336 aa31.55■■■□□ 2.64
CPSF1-214ENST00000622776 PNISRQ8TF01 805 aaKnown RBP31.54■■■□□ 2.64
CPSF1-214ENST00000622776 GTF2E1P29083 439 aaPredicted RBP31.5■■■□□ 2.63
CPSF1-214ENST00000622776 CHADLQ6NUI6 762 aa31.5■■■□□ 2.63
CPSF1-214ENST00000622776 NGEFQ8N5V2 710 aa31.5■■■□□ 2.63
CPSF1-214ENST00000622776 PLEKHF1Q96S99 279 aa31.5■■■□□ 2.63
CPSF1-214ENST00000622776 FKBP4Q02790 459 aaKnown RBP eCLIP31.49■■■□□ 2.63
CPSF1-214ENST00000622776 COL13A1Q5TAT6 717 aaPredicted RBP31.49■■■□□ 2.63
CPSF1-214ENST00000622776 DLG5Q8TDM6 1919 aa31.49■■■□□ 2.63
CPSF1-214ENST00000622776 POTEIP0CG38 1075 aa31.48■■■□□ 2.63
CPSF1-214ENST00000622776 POTEJP0CG39 1038 aa31.48■■■□□ 2.63
CPSF1-214ENST00000622776 EIF4A1P60842 406 aaKnown RBP31.48■■■□□ 2.63
CPSF1-214ENST00000622776 NFE2L2Q16236 605 aa31.48■■■□□ 2.63
CPSF1-214ENST00000622776 OLFM4Q6UX06 510 aa31.48■■■□□ 2.63
CPSF1-214ENST00000622776 LAMB4A4D0S4 1761 aa31.48■■■□□ 2.63
CPSF1-214ENST00000622776 ERVV-1B6SEH8 477 aa31.47■■■□□ 2.63
CPSF1-214ENST00000622776 RTKN2Q8IZC4 609 aa31.47■■■□□ 2.63
CPSF1-214ENST00000622776 ZNF277Q9NRM2 450 aaPredicted RBP31.47■■■□□ 2.63
CPSF1-214ENST00000622776 ALDH1B1P30837 517 aa31.46■■■□□ 2.63
CPSF1-214ENST00000622776 L3MBTL3Q96JM7 780 aaPredicted RBP31.46■■■□□ 2.63
CPSF1-214ENST00000622776 THUMPD2Q9BTF0 503 aaKnown RBP31.46■■■□□ 2.63
CPSF1-214ENST00000622776 RRP7AQ9Y3A4 280 aaKnown RBP31.46■■■□□ 2.63
CPSF1-214ENST00000622776 IQCA1LA6NCM1 817 aa31.45■■■□□ 2.63
CPSF1-214ENST00000622776 NYXQ9GZU5 481 aa31.45■■■□□ 2.63
CPSF1-214ENST00000622776 KDM3BQ7LBC6 1761 aa31.45■■■□□ 2.62
CPSF1-214ENST00000622776 MAP3K15Q6ZN16 1313 aa31.45■■■□□ 2.62
CPSF1-214ENST00000622776 TTLL7Q6ZT98 887 aa31.44■■■□□ 2.62
CPSF1-214ENST00000622776 KIF6Q6ZMV9 814 aa31.43■■■□□ 2.62
CPSF1-214ENST00000622776 CRY2Q49AN0 593 aa31.42■■■□□ 2.62
CPSF1-214ENST00000622776 NUTM1Q86Y26 1132 aa31.42■■■□□ 2.62
CPSF1-214ENST00000622776 PNNQ9H307 717 aaKnown RBP31.42■■■□□ 2.62
CPSF1-214ENST00000622776 TAF1DQ9H5J8 278 aaPredicted RBP31.42■■■□□ 2.62
CPSF1-214ENST00000622776 ABCC12Q96J65 1359 aa31.42■■■□□ 2.62
CPSF1-214ENST00000622776 MYL6BP14649 208 aa31.41■■■□□ 2.62
CPSF1-214ENST00000622776 CREBZFQ9NS37 354 aa31.41■■■□□ 2.62
CPSF1-214ENST00000622776 ZNF541Q9H0D2 1346 aa31.41■■■□□ 2.62
CPSF1-214ENST00000622776 MAPK8IP3Q9UPT6 1336 aa31.41■■■□□ 2.62
CPSF1-214ENST00000622776 HSPA1AP0DMV8 641 aaKnown RBP31.4■■■□□ 2.62
CPSF1-214ENST00000622776 HSPA1BP0DMV9 641 aaKnown RBP31.4■■■□□ 2.62
CPSF1-214ENST00000622776 LDHDQ86WU2 507 aa31.4■■■□□ 2.62
CPSF1-214ENST00000622776 SYNE4Q8N205 404 aa31.4■■■□□ 2.62
CPSF1-214ENST00000622776 NUP98P52948 1817 aa31.4■■■□□ 2.62
CPSF1-214ENST00000622776 GPTP24298 496 aa31.39■■■□□ 2.62
CPSF1-214ENST00000622776 IARSP41252 1262 aaKnown RBP31.39■■■□□ 2.62
CPSF1-214ENST00000622776 ZBTB3Q9H5J0 574 aa31.39■■■□□ 2.62
CPSF1-214ENST00000622776 SCN4AP35499 1836 aa31.39■■■□□ 2.62
CPSF1-214ENST00000622776 UBN2Q6ZU65 1347 aa31.36■■■□□ 2.61
CPSF1-214ENST00000622776 PSMD1Q99460 953 aa31.36■■■□□ 2.61
CPSF1-214ENST00000622776 IBTKQ9P2D0 1353 aaPredicted RBP31.35■■■□□ 2.61
CPSF1-214ENST00000622776 ERBB4Q15303 1308 aa31.35■■■□□ 2.61
CPSF1-214ENST00000622776 FZD9O00144 591 aa31.35■■■□□ 2.61
CPSF1-214ENST00000622776 SUSD4Q5VX71 490 aa31.35■■■□□ 2.61
CPSF1-214ENST00000622776 CC2D2BQ6DHV5 1058 aa31.35■■■□□ 2.61
CPSF1-214ENST00000622776 MKRN1Q9UHC7 482 aaKnown RBP31.35■■■□□ 2.61
CPSF1-214ENST00000622776 HACL1Q9UJ83 578 aa31.35■■■□□ 2.61
CPSF1-214ENST00000622776 SNED1Q8TER0 1413 aa31.34■■■□□ 2.61
CPSF1-214ENST00000622776 PASKQ96RG2 1323 aa31.34■■■□□ 2.61
CPSF1-214ENST00000622776 HOXA10P31260 410 aaPredicted RBP31.34■■■□□ 2.61
CPSF1-214ENST00000622776 EAPPQ56P03 285 aaPredicted RBP31.34■■■□□ 2.61
CPSF1-214ENST00000622776 ZNF34Q8IZ26 560 aa31.34■■■□□ 2.61
CPSF1-214ENST00000622776 TNS4Q8IZW8 715 aa31.34■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms