RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 USP17L20D6RJB6 530 aa10.62□□□□□ -0.71
VPS29-212ENST00000621131 USP17L24Q0WX57 530 aa10.62□□□□□ -0.71
VPS29-212ENST00000621131 ANKMY2Q8IV38 441 aa10.62□□□□□ -0.71
VPS29-212ENST00000621131 STAG2Q8N3U4 1231 aa10.62□□□□□ -0.71
VPS29-212ENST00000621131 GOLGA6L1Q8N7Z2 621 aa10.62□□□□□ -0.71
VPS29-212ENST00000621131 CNTNAP5Q8WYK1 1306 aa10.61□□□□□ -0.71
VPS29-212ENST00000621131 SHISA8B8ZZ34 492 aa10.61□□□□□ -0.71
VPS29-212ENST00000621131 EFSO43281 561 aa10.61□□□□□ -0.71
VPS29-212ENST00000621131 PPP1R12BO60237 982 aaPredicted RBP10.61□□□□□ -0.71
VPS29-212ENST00000621131 CD33P20138 364 aa10.61□□□□□ -0.71
VPS29-212ENST00000621131 IRS1P35568 1242 aa10.61□□□□□ -0.71
VPS29-212ENST00000621131 LRRC69Q6ZNQ3 347 aa10.61□□□□□ -0.71
VPS29-212ENST00000621131 GAS2L2Q8NHY3 880 aa10.61□□□□□ -0.71
VPS29-212ENST00000621131 EDARADDQ8WWZ3 215 aa10.61□□□□□ -0.71
VPS29-212ENST00000621131 ARXQ96QS3 562 aa10.61□□□□□ -0.71
VPS29-212ENST00000621131 ZMYND15Q9H091 742 aa10.61□□□□□ -0.71
VPS29-212ENST00000621131 STRN4Q9NRL3 753 aa10.61□□□□□ -0.71
VPS29-212ENST00000621131 GGA1Q9UJY5 639 aa10.61□□□□□ -0.71
VPS29-212ENST00000621131 ARAFP10398 606 aa10.6□□□□□ -0.71
VPS29-212ENST00000621131 TMEM151AQ8N4L1 468 aa10.6□□□□□ -0.71
VPS29-212ENST00000621131 SCG3Q8WXD2 468 aaKnown RBP10.6□□□□□ -0.71
VPS29-212ENST00000621131 C2orf49Q9BVC5 232 aaPredicted RBP10.6□□□□□ -0.71
VPS29-212ENST00000621131 PHACTR1Q9C0D0 580 aa10.6□□□□□ -0.71
VPS29-212ENST00000621131 KLF15Q9UIH9 416 aa10.6□□□□□ -0.71
VPS29-212ENST00000621131 CHMP3Q9Y3E7 222 aa10.6□□□□□ -0.71
VPS29-212ENST00000621131 DNMT3AQ9Y6K1 912 aaPredicted RBP10.6□□□□□ -0.71
VPS29-212ENST00000621131 GDF11O95390 407 aa10.59□□□□□ -0.71
VPS29-212ENST00000621131 LAMC2Q13753 1193 aa10.59□□□□□ -0.71
VPS29-212ENST00000621131 RHPN1Q8TCX5 695 aa10.59□□□□□ -0.71
VPS29-212ENST00000621131 HINFPQ9BQA5 517 aa10.59□□□□□ -0.71
VPS29-212ENST00000621131 SLCO4C1Q6ZQN7 724 aa10.58□□□□□ -0.72
VPS29-212ENST00000621131 BEND7Q8N7W2 519 aaPredicted RBP10.58□□□□□ -0.72
VPS29-212ENST00000621131 NEUROD4Q9HD90 331 aa10.58□□□□□ -0.72
VPS29-212ENST00000621131 MARK1Q9P0L2 795 aa10.58□□□□□ -0.72
VPS29-212ENST00000621131 LGR5O75473 907 aa10.57□□□□□ -0.72
VPS29-212ENST00000621131 CDCA8Q53HL2 280 aa10.57□□□□□ -0.72
VPS29-212ENST00000621131 KANK3Q6NY19 840 aa10.57□□□□□ -0.72
VPS29-212ENST00000621131 EPXP11678 715 aa10.56□□□□□ -0.72
VPS29-212ENST00000621131 ALDH16A1Q8IZ83 802 aa10.56□□□□□ -0.72
VPS29-212ENST00000621131 AVENQ9NQS1 362 aaPredicted RBP10.56□□□□□ -0.72
VPS29-212ENST00000621131 GTF3C3Q9Y5Q9 886 aa10.56□□□□□ -0.72
VPS29-212ENST00000621131 NEURL1BA8MQ27 555 aa10.55□□□□□ -0.72
VPS29-212ENST00000621131 HOXB4P17483 251 aaPredicted RBP10.55□□□□□ -0.72
VPS29-212ENST00000621131 RFX1P22670 979 aa10.55□□□□□ -0.72
VPS29-212ENST00000621131 SNRPNP63162 240 aaKnown RBP10.55□□□□□ -0.72
VPS29-212ENST00000621131 SFSWAPQ12872 951 aaKnown RBP10.55□□□□□ -0.72
VPS29-212ENST00000621131 KCTD17Q8N5Z5 321 aa10.55□□□□□ -0.72
VPS29-212ENST00000621131 ZNF280CQ8ND82 737 aa10.55□□□□□ -0.72
VPS29-212ENST00000621131 CHMP7Q8WUX9 453 aaPredicted RBP10.55□□□□□ -0.72
VPS29-212ENST00000621131 ANKIB1Q9P2G1 1089 aa10.55□□□□□ -0.72
VPS29-212ENST00000621131 PHF20L1A8MW92 1017 aa10.54□□□□□ -0.72
VPS29-212ENST00000621131 IGFBP4P22692 258 aa10.54□□□□□ -0.72
VPS29-212ENST00000621131 GRIN2CQ14957 1233 aa10.54□□□□□ -0.72
VPS29-212ENST00000621131 HSH2DQ96JZ2 352 aa10.54□□□□□ -0.72
VPS29-212ENST00000621131 BTBD6Q96KE9 485 aa10.54□□□□□ -0.72
VPS29-212ENST00000621131 SUSD3Q96L08 255 aa10.54□□□□□ -0.72
VPS29-212ENST00000621131 ADH6P28332 368 aa10.53□□□□□ -0.72
VPS29-212ENST00000621131 SRPK2P78362 688 aaKnown RBP10.53□□□□□ -0.72
VPS29-212ENST00000621131 ZNF468Q5VIY5 522 aaPredicted RBP10.53□□□□□ -0.72
VPS29-212ENST00000621131 FCHSD1Q86WN1 690 aa10.53□□□□□ -0.72
VPS29-212ENST00000621131 WEE1P30291 646 aa10.52□□□□□ -0.73
VPS29-212ENST00000621131 PODNQ7Z5L7 613 aa10.52□□□□□ -0.73
VPS29-212ENST00000621131 FAM200AQ8TCP9 573 aa10.52□□□□□ -0.73
VPS29-212ENST00000621131 PRR12Q9ULL5 1215 aa10.52□□□□□ -0.73
VPS29-212ENST00000621131 PCBP4P57723 403 aaKnown RBP10.51□□□□□ -0.73
VPS29-212ENST00000621131 LINC00114Q6XXX2 140 aa10.5□□□□□ -0.73
VPS29-212ENST00000621131 NGLY1Q96IV0 654 aa10.5□□□□□ -0.73
VPS29-212ENST00000621131 CEP63Q96MT8 703 aa10.5□□□□□ -0.73
VPS29-212ENST00000621131 SLC30A3Q99726 388 aa10.5□□□□□ -0.73
VPS29-212ENST00000621131 KCNQ4P56696 695 aa10.49□□□□□ -0.73
VPS29-212ENST00000621131 RRAGCQ9HB90 399 aa10.49□□□□□ -0.73
VPS29-212ENST00000621131 BRD7Q9NPI1 651 aa10.49□□□□□ -0.73
VPS29-212ENST00000621131 NOVA2Q9UNW9 492 aaKnown RBP10.49□□□□□ -0.73
VPS29-212ENST00000621131 AMPD1P23109 780 aa10.48□□□□□ -0.73
VPS29-212ENST00000621131 TYRO3Q06418 890 aa10.48□□□□□ -0.73
VPS29-212ENST00000621131 ELOAQ14241 798 aaKnown RBP10.48□□□□□ -0.73
VPS29-212ENST00000621131 RTN1Q16799 776 aa10.48□□□□□ -0.73
VPS29-212ENST00000621131 SYT9Q86SS6 491 aa10.48□□□□□ -0.73
VPS29-212ENST00000621131 MDFIQ99750 246 aa10.48□□□□□ -0.73
VPS29-212ENST00000621131 MKL2Q9ULH7 1088 aa10.48□□□□□ -0.73
VPS29-212ENST00000621131 BTLAQ7Z6A9 289 aa10.47□□□□□ -0.73
VPS29-212ENST00000621131 DCAF5Q96JK2 942 aa10.47□□□□□ -0.73
VPS29-212ENST00000621131 BCS1LQ9Y276 419 aa10.47□□□□□ -0.73
VPS29-212ENST00000621131 FOXO3O43524 673 aa10.46□□□□□ -0.73
VPS29-212ENST00000621131 HIF1AQ16665 826 aa10.46□□□□□ -0.73
VPS29-212ENST00000621131 CHSY3Q70JA7 882 aa10.46□□□□□ -0.73
VPS29-212ENST00000621131 DMGDHQ9UI17 866 aaKnown RBP10.46□□□□□ -0.73
VPS29-212ENST00000621131 ZMIZ1Q9ULJ6 1067 aa10.46□□□□□ -0.73
VPS29-212ENST00000621131 KCNH4Q9UQ05 1017 aa10.46□□□□□ -0.73
VPS29-212ENST00000621131 SIN3BO75182 1162 aa10.45□□□□□ -0.74
VPS29-212ENST00000621131 SPEM2Q0P670 501 aa10.45□□□□□ -0.74
VPS29-212ENST00000621131 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.44□□□□□ -0.74
VPS29-212ENST00000621131 DGKGP49619 791 aa10.44□□□□□ -0.74
VPS29-212ENST00000621131 FAM69CQ0P6D2 419 aa10.44□□□□□ -0.74
VPS29-212ENST00000621131 IER5Q5VY09 327 aa10.44□□□□□ -0.74
VPS29-212ENST00000621131 QTRT2Q9H974 415 aaKnown RBP10.44□□□□□ -0.74
VPS29-212ENST00000621131 ELOA3CA0A087WX78 387 aaPredicted RBP10.43□□□□□ -0.74
VPS29-212ENST00000621131 ELOA3DA6NLF2 546 aaPredicted RBP10.43□□□□□ -0.74
VPS29-212ENST00000621131 ADARB2-AS1A8MUL3 147 aa10.43□□□□□ -0.74
VPS29-212ENST00000621131 ELOA3BQ3SY89 546 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms