RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 IFFO2Q5TF58 517 aa8.26□□□□□ -1.09
NEDD9-216ENST00000620854 BECN2A8MW95 431 aa8.26□□□□□ -1.09
NEDD9-216ENST00000620854 TPD52L1Q16890 204 aaPredicted RBP8.26□□□□□ -1.09
NEDD9-216ENST00000620854 TRMT1Q9NXH9 659 aaKnown RBP8.26□□□□□ -1.09
NEDD9-216ENST00000620854 DACT1Q9NYF0 836 aa8.26□□□□□ -1.09
NEDD9-216ENST00000620854 ATP6V1DQ9Y5K8 247 aa8.26□□□□□ -1.09
NEDD9-216ENST00000620854 NUTM2BA6NNL0 878 aaPredicted RBP8.26□□□□□ -1.09
NEDD9-216ENST00000620854 NUTM2EB1AL46 878 aaPredicted RBP8.26□□□□□ -1.09
NEDD9-216ENST00000620854 TNNT1P13805 278 aa8.26□□□□□ -1.09
NEDD9-216ENST00000620854 LTKP29376 864 aa8.26□□□□□ -1.09
NEDD9-216ENST00000620854 ANAPC15P60006 121 aa8.26□□□□□ -1.09
NEDD9-216ENST00000620854 PTH1RQ03431 593 aa8.26□□□□□ -1.09
NEDD9-216ENST00000620854 ZNF530Q6P9A1 599 aaPredicted RBP8.26□□□□□ -1.09
NEDD9-216ENST00000620854 NUTM2AQ8IVF1 878 aaPredicted RBP8.26□□□□□ -1.09
NEDD9-216ENST00000620854 DDX11Q96FC9 970 aa8.26□□□□□ -1.09
NEDD9-216ENST00000620854 PDRG1Q9NUG6 133 aa8.26□□□□□ -1.09
NEDD9-216ENST00000620854 ADGRB3O60242 1522 aa8.26□□□□□ -1.09
NEDD9-216ENST00000620854 ANO6Q4KMQ2 910 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 TAF7LQ5H9L4 462 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 TTC21BQ7Z4L5 1316 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 CAMSAP1Q5T5Y3 1602 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 FILIP1Q7Z7B0 1213 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 BICD2Q8TD16 824 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 USP44Q9H0E7 712 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 TNMDQ9H2S6 317 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 C19orf44Q9H6X5 657 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 ABCC3O15438 1527 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 GOLGA6L19H0YKK7 550 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 NBPF7P0C2Y1 421 aaPredicted RBP8.25□□□□□ -1.09
NEDD9-216ENST00000620854 ARID5BQ14865 1188 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 CCAR2Q8N163 923 aaKnown RBP8.25□□□□□ -1.09
NEDD9-216ENST00000620854 RHPN1Q8TCX5 695 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 ERCC4Q92889 916 aaPredicted RBP8.25□□□□□ -1.09
NEDD9-216ENST00000620854 NUP62CLQ9H1M0 184 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 C9orf78Q9NZ63 289 aaPredicted RBP8.25□□□□□ -1.09
NEDD9-216ENST00000620854 SETBP1Q9Y6X0 1596 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 KNDC1Q76NI1 1749 aa8.25□□□□□ -1.09
NEDD9-216ENST00000620854 RPAP1Q9BWH6 1393 aaPredicted RBP8.25□□□□□ -1.09
NEDD9-216ENST00000620854 ERICH4A6NGS2 130 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 LETM1O95202 739 aaPredicted RBP8.24□□□□□ -1.09
NEDD9-216ENST00000620854 TTC6Q86TZ1 520 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 ZBTB9Q96C00 473 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 TRERF1Q96PN7 1200 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 DNAJC25Q9H1X3 360 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 MTMR6Q9Y217 621 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 TTC21AQ8NDW8 1320 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 ARHGEF40Q8TER5 1519 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 RGS12O14924 1447 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 SGSM2O43147 1006 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 TYRO3Q06418 890 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 NEXNQ0ZGT2 675 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 MAP3K11Q16584 847 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 CDC37L1Q7L3B6 337 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 MROH1Q8NDA8 1641 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 ME3Q16798 604 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 CNTROBQ8N137 903 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 PA2G4Q9UQ80 394 aaKnown RBP8.24□□□□□ -1.09
NEDD9-216ENST00000620854 VWDEQ8N2E2 1590 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 MAP2P11137 1827 aaKnown RBP8.24□□□□□ -1.09
NEDD9-216ENST00000620854 ZFYVE9O95405 1425 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 DDX58O95786 925 aaKnown RBP8.24□□□□□ -1.09
NEDD9-216ENST00000620854 CCDC30Q5VVM6 783 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 USHBP1Q8N6Y0 703 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 SPTLC3Q9NUV7 552 aa8.24□□□□□ -1.09
NEDD9-216ENST00000620854 MYO3AQ8NEV4 1616 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 TAF7Q15545 349 aaPredicted RBP8.23□□□□□ -1.09
NEDD9-216ENST00000620854 HDGFL1Q5TGJ6 251 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 CYP46A1Q9Y6A2 500 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 ZKSCAN1P17029 563 aaPredicted RBP8.23□□□□□ -1.09
NEDD9-216ENST00000620854 TNNT3P45378 269 aaPredicted RBP8.23□□□□□ -1.09
NEDD9-216ENST00000620854 KRT85P78386 507 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 CCDC112Q8NEF3 446 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 CBX8Q9HC52 389 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 SOS1Q07889 1333 aaPredicted RBP8.23□□□□□ -1.09
NEDD9-216ENST00000620854 MAP3K19Q56UN5 1328 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 NPHP3Q7Z494 1330 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 ARHGAP31Q2M1Z3 1444 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 DEPDC5O75140 1603 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 VGLL3A8MV65 326 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 RAB11FIP3O75154 756 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 ZNF165P49910 485 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 NCBP1Q09161 790 aaKnown RBP8.23□□□□□ -1.09
NEDD9-216ENST00000620854 FAM200AQ8TCP9 573 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 SPATA32Q96LK8 384 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 HYPKQ9NX55 129 aa8.23□□□□□ -1.09
NEDD9-216ENST00000620854 GTF2E1P29083 439 aaPredicted RBP8.22□□□□□ -1.09
NEDD9-216ENST00000620854 TPM4P67936 248 aa8.22□□□□□ -1.09
NEDD9-216ENST00000620854 BBXQ8WY36 941 aaPredicted RBP8.22□□□□□ -1.09
NEDD9-216ENST00000620854 LSG1Q9H089 658 aaKnown RBP8.22□□□□□ -1.09
NEDD9-216ENST00000620854 SIL1Q9H173 461 aa8.22□□□□□ -1.09
NEDD9-216ENST00000620854 CLIP2Q9UDT6 1046 aa8.22□□□□□ -1.09
NEDD9-216ENST00000620854 RAD50Q92878 1312 aa8.22□□□□□ -1.09
NEDD9-216ENST00000620854 GTF2F1P35269 517 aaKnown RBP eCLIP8.22□□□□□ -1.097e-8■■■□□ 19.1
NEDD9-216ENST00000620854 FAM227BQ96M60 508 aa8.22□□□□□ -1.09
NEDD9-216ENST00000620854 GTPBP4Q9BZE4 634 aaKnown RBP8.22□□□□□ -1.09
NEDD9-216ENST00000620854 TPCN1Q9ULQ1 816 aa8.22□□□□□ -1.09
NEDD9-216ENST00000620854 MRVI1Q9Y6F6 885 aa8.22□□□□□ -1.09
NEDD9-216ENST00000620854 SALL3Q9BXA9 1300 aa8.22□□□□□ -1.09
NEDD9-216ENST00000620854 PI4KAP2A4QPH2 592 aa8.22□□□□□ -1.09
NEDD9-216ENST00000620854 IFIT2P09913 472 aaKnown RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 262 ms