RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 SLC5A1P13866 664 aa16.52■□□□□ 0.24
CIITA-213ENST00000618327 AIDAQ96BJ3 306 aa16.52■□□□□ 0.24
CIITA-213ENST00000618327 EIF4A1P60842 406 aaKnown RBP16.52■□□□□ 0.23
CIITA-213ENST00000618327 STK3Q13188 491 aa16.52■□□□□ 0.23
CIITA-213ENST00000618327 PRPF40BQ6NWY9 871 aaKnown RBP16.52■□□□□ 0.23
CIITA-213ENST00000618327 CDC5LQ99459 802 aaKnown RBP16.51■□□□□ 0.23
CIITA-213ENST00000618327 UPF3BQ9BZI7 483 aaKnown RBP16.51■□□□□ 0.23
CIITA-213ENST00000618327 ZNF521Q96K83 1311 aa16.51■□□□□ 0.23
CIITA-213ENST00000618327 RTL1A6NKG5 1358 aa16.51■□□□□ 0.23
CIITA-213ENST00000618327 CASTP20810 708 aaKnown RBP16.51■□□□□ 0.23
CIITA-213ENST00000618327 TDO2P48775 406 aa16.51■□□□□ 0.23
CIITA-213ENST00000618327 TRMT2AQ8IZ69 625 aaKnown RBP16.51■□□□□ 0.23
CIITA-213ENST00000618327 RFC4P35249 363 aa16.51■□□□□ 0.23
CIITA-213ENST00000618327 USP19O94966 1318 aa16.5■□□□□ 0.23
CIITA-213ENST00000618327 ARHGEF40Q8TER5 1519 aa16.5■□□□□ 0.23
CIITA-213ENST00000618327 SDSP20132 328 aa16.5■□□□□ 0.23
CIITA-213ENST00000618327 DZIP3Q86Y13 1208 aaKnown RBP16.5■□□□□ 0.23
CIITA-213ENST00000618327 KIF24Q5T7B8 1368 aa16.5■□□□□ 0.23
CIITA-213ENST00000618327 STK11IPQ8N1F8 1099 aa16.5■□□□□ 0.23
CIITA-213ENST00000618327 PPP1R1BQ9UD71 204 aaPredicted RBP16.5■□□□□ 0.23
CIITA-213ENST00000618327 CDK12Q9NYV4 1490 aaPredicted RBP16.5■□□□□ 0.23
CIITA-213ENST00000618327 C16orf71Q8IYS4 520 aaPredicted RBP16.5■□□□□ 0.23
CIITA-213ENST00000618327 ZSCAN31Q96LW9 406 aaPredicted RBP16.5■□□□□ 0.23
CIITA-213ENST00000618327 PA2G4Q9UQ80 394 aaKnown RBP16.5■□□□□ 0.23
CIITA-213ENST00000618327 MTMR7Q9Y216 660 aa16.5■□□□□ 0.23
CIITA-213ENST00000618327 XBP1P17861 261 aa16.49■□□□□ 0.23
CIITA-213ENST00000618327 ZNF335Q9H4Z2 1342 aaPredicted RBP16.49■□□□□ 0.23
CIITA-213ENST00000618327 IMMTQ16891 758 aaKnown RBP16.49■□□□□ 0.23
CIITA-213ENST00000618327 ZNF496Q96IT1 587 aaPredicted RBP16.49■□□□□ 0.23
CIITA-213ENST00000618327 NEXMIFQ5QGS0 1516 aa16.49■□□□□ 0.23
CIITA-213ENST00000618327 LAMC1P11047 1609 aa16.49■□□□□ 0.23
CIITA-213ENST00000618327 QRICH2Q9H0J4 1663 aa16.49■□□□□ 0.23
CIITA-213ENST00000618327 ZC3H13Q5T200 1668 aaKnown RBP16.49■□□□□ 0.23
CIITA-213ENST00000618327 PHKG2P15735 406 aa16.49■□□□□ 0.23
CIITA-213ENST00000618327 ANKIB1Q9P2G1 1089 aa16.49■□□□□ 0.23
CIITA-213ENST00000618327 GOLGA6L1Q8N7Z2 621 aa16.48■□□□□ 0.23
CIITA-213ENST00000618327 U3KPZ7 1027 aaPredicted RBP16.48■□□□□ 0.23
CIITA-213ENST00000618327 GOLIM4O00461 696 aa16.48■□□□□ 0.23
CIITA-213ENST00000618327 MAP3K12Q12852 859 aa16.48■□□□□ 0.23
CIITA-213ENST00000618327 CIZ1Q9ULV3 898 aaPredicted RBP16.48■□□□□ 0.23
CIITA-213ENST00000618327 KDM4AO75164 1064 aa16.48■□□□□ 0.23
CIITA-213ENST00000618327 BECN2A8MW95 431 aa16.47■□□□□ 0.23
CIITA-213ENST00000618327 CCDC152Q4G0S7 254 aa16.47■□□□□ 0.23
CIITA-213ENST00000618327 CCDC73Q6ZRK6 1079 aa16.47■□□□□ 0.23
CIITA-213ENST00000618327 NBPF5PQ86XG9 351 aaPredicted RBP16.47■□□□□ 0.23
CIITA-213ENST00000618327 TRAK2O60296 914 aa16.47■□□□□ 0.23
CIITA-213ENST00000618327 RPGRQ92834 1020 aaKnown RBP16.47■□□□□ 0.23
CIITA-213ENST00000618327 SNRKQ9NRH2 765 aa16.47■□□□□ 0.23
CIITA-213ENST00000618327 NIP7Q9Y221 180 aaKnown RBP eCLIP16.47■□□□□ 0.23
CIITA-213ENST00000618327 TBC1D32Q96NH3 1257 aa16.47■□□□□ 0.23
CIITA-213ENST00000618327 BRMS1Q9HCU9 246 aa16.47■□□□□ 0.23
CIITA-213ENST00000618327 WDR33Q9C0J8 1336 aaKnown RBP16.47■□□□□ 0.23
CIITA-213ENST00000618327 GOLGA6L19H0YKK7 550 aa16.46■□□□□ 0.23
CIITA-213ENST00000618327 IL15P40933 162 aaPredicted RBP16.46■□□□□ 0.23
CIITA-213ENST00000618327 PLBD2Q8NHP8 589 aa16.46■□□□□ 0.23
CIITA-213ENST00000618327 KCNQ3O43525 872 aa16.46■□□□□ 0.23
CIITA-213ENST00000618327 METTL22Q9BUU2 404 aaPredicted RBP16.46■□□□□ 0.23
CIITA-213ENST00000618327 ADGRL3Q9HAR2 1447 aa16.46■□□□□ 0.23
CIITA-213ENST00000618327 ERVV-2B6SEH9 535 aa16.45■□□□□ 0.22
CIITA-213ENST00000618327 DDX46Q7L014 1031 aaKnown RBP16.45■□□□□ 0.22
CIITA-213ENST00000618327 CTDP1Q9Y5B0 961 aaPredicted RBP16.45■□□□□ 0.22
CIITA-213ENST00000618327 PRPF40AO75400 957 aaKnown RBP16.45■□□□□ 0.22
CIITA-213ENST00000618327 LARP1BQ659C4 914 aaKnown RBP16.45■□□□□ 0.22
CIITA-213ENST00000618327 SETDB2Q96T68 719 aa16.45■□□□□ 0.22
CIITA-213ENST00000618327 CCDC69A6NI79 296 aa16.45■□□□□ 0.22
CIITA-213ENST00000618327 BICC1Q9H694 974 aaKnown RBP16.45■□□□□ 0.22
CIITA-213ENST00000618327 GIGYF1O75420 1035 aaPredicted RBP16.45■□□□□ 0.22
CIITA-213ENST00000618327 A1BGP04217 495 aa16.45■□□□□ 0.22
CIITA-213ENST00000618327 PRIM1P49642 420 aaKnown RBP16.45■□□□□ 0.22
CIITA-213ENST00000618327 CREBRFQ8IUR6 639 aa16.45■□□□□ 0.22
CIITA-213ENST00000618327 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.45■□□□□ 0.22
CIITA-213ENST00000618327 PIK3C2BO00750 1634 aa16.44■□□□□ 0.22
CIITA-213ENST00000618327 TULP4Q9NRJ4 1543 aa16.44■□□□□ 0.22
CIITA-213ENST00000618327 C8orf34Q49A92 452 aa16.44■□□□□ 0.22
CIITA-213ENST00000618327 TBC1D2Q9BYX2 928 aa16.44■□□□□ 0.22
CIITA-213ENST00000618327 UTP14AQ9BVJ6 771 aaKnown RBP16.44■□□□□ 0.22
CIITA-213ENST00000618327 ERBB3P21860 1342 aa16.44■□□□□ 0.22
CIITA-213ENST00000618327 FIBPO43427 364 aa16.44■□□□□ 0.22
CIITA-213ENST00000618327 MBD3O95983 291 aa16.44■□□□□ 0.22
CIITA-213ENST00000618327 NOC3LQ8WTT2 800 aaKnown RBP16.44■□□□□ 0.22
CIITA-213ENST00000618327 CLSTN1O94985 981 aa16.43■□□□□ 0.22
CIITA-213ENST00000618327 PLEKHM2Q8IWE5 1019 aa16.43■□□□□ 0.22
CIITA-213ENST00000618327 UBAC1Q9BSL1 405 aa16.43■□□□□ 0.22
CIITA-213ENST00000618327 PTPRMP28827 1452 aa16.43■□□□□ 0.22
CIITA-213ENST00000618327 TTF1Q15361 905 aaPredicted RBP16.43■□□□□ 0.22
CIITA-213ENST00000618327 ATP2B3Q16720 1220 aa16.43■□□□□ 0.22
CIITA-213ENST00000618327 FAM98CQ17RN3 349 aaKnown RBP16.43■□□□□ 0.22
CIITA-213ENST00000618327 TRIM22Q8IYM9 498 aa16.43■□□□□ 0.22
CIITA-213ENST00000618327 KDM2BQ8NHM5 1336 aa16.43■□□□□ 0.22
CIITA-213ENST00000618327 NAPBQ9H115 298 aa16.42■□□□□ 0.22
CIITA-213ENST00000618327 IRS4O14654 1257 aaPredicted RBP16.42■□□□□ 0.22
CIITA-213ENST00000618327 BRINP3Q76B58 766 aa16.42■□□□□ 0.22
CIITA-213ENST00000618327 BCL11BQ9C0K0 894 aaPredicted RBP16.42■□□□□ 0.22
CIITA-213ENST00000618327 HOOK1Q9UJC3 728 aaKnown RBP16.42■□□□□ 0.22
CIITA-213ENST00000618327 ABCC4O15439 1325 aa16.42■□□□□ 0.22
CIITA-213ENST00000618327 RBM5P52756 815 aaKnown RBP eCLIP16.42■□□□□ 0.22
CIITA-213ENST00000618327 DNAJC10Q8IXB1 793 aa16.42■□□□□ 0.22
CIITA-213ENST00000618327 NUP133Q8WUM0 1156 aa16.42■□□□□ 0.22
CIITA-213ENST00000618327 RTCBQ9Y3I0 505 aaKnown RBP16.42■□□□□ 0.22
CIITA-213ENST00000618327 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms