RNA–Protein interactions for RNA: ENST00000617647.4

PDE6A-205, Transcript of phosphodiesterase 6A, humanhuman

TSL 1 (best) BASIC

Gene PDE6A, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDE6A-205ENST00000617647 SSBP05455 408 aaKnown RBP eCLIP8.59□□□□□ -1.03
PDE6A-205ENST00000617647 PDE6BP35913 854 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 NUP133Q8WUM0 1156 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 SPATA32Q96LK8 384 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 CEP89Q96ST8 783 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 SUDS3Q9H7L9 328 aaPredicted RBP8.59□□□□□ -1.03
PDE6A-205ENST00000617647 USP16Q9Y5T5 823 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 ROCK1Q13464 1354 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 PES1O00541 588 aaKnown RBP8.59□□□□□ -1.03
PDE6A-205ENST00000617647 STX6O43752 255 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 PLA2G4AP47712 749 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 POTEDQ86YR6 584 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 CTCFLQ8NI51 663 aaPredicted RBP8.59□□□□□ -1.03
PDE6A-205ENST00000617647 SDF4Q9BRK5 362 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 CRACR2AQ9BSW2 395 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 CBX8Q9HC52 389 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 CFDP1Q9UEE9 299 aaPredicted RBP8.59□□□□□ -1.03
PDE6A-205ENST00000617647 EXOC6BQ9Y2D4 811 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 SPAG9O60271 1321 aaKnown RBP8.59□□□□□ -1.03
PDE6A-205ENST00000617647 NCOA3Q9Y6Q9 1424 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 ZSCAN22P10073 491 aaPredicted RBP8.59□□□□□ -1.03
PDE6A-205ENST00000617647 HDXQ7Z353 690 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.59□□□□□ -1.03
PDE6A-205ENST00000617647 SRCIN1Q9C0H9 1055 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 DNMT1P26358 1616 aaKnown RBP8.59□□□□□ -1.03
PDE6A-205ENST00000617647 NPC1L1Q9UHC9 1359 aa8.59□□□□□ -1.03
PDE6A-205ENST00000617647 DNM1Q05193 864 aaKnown RBP8.58□□□□□ -1.04
PDE6A-205ENST00000617647 SSH1Q8WYL5 1049 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 SGSM3Q96HU1 749 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 PDE11AQ9HCR9 933 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 ZNF446Q9NWS9 450 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 STAG3Q9UJ98 1225 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 KIF3CO14782 793 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 KINO60870 393 aaKnown RBP8.58□□□□□ -1.04
PDE6A-205ENST00000617647 IPO7O95373 1038 aaKnown RBP8.58□□□□□ -1.04
PDE6A-205ENST00000617647 CEP57L1Q8IYX8 460 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 DYDC1Q8WWB3 177 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 GOLGA1Q92805 767 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 USP26Q9BXU7 913 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 GNL3LQ9NVN8 582 aaKnown RBP8.58□□□□□ -1.04
PDE6A-205ENST00000617647 ELP1O95163 1332 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 ZSCAN12O43309 604 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 SETSIPP0DME0 302 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 PPP2R3AQ06190 1150 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 PSMD2Q13200 908 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 SF3A1Q15459 793 aaKnown RBP8.58□□□□□ -1.04
PDE6A-205ENST00000617647 RPUSD2Q8IZ73 545 aaKnown RBP8.58□□□□□ -1.04
PDE6A-205ENST00000617647 DACT1Q9NYF0 836 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 ITSN2Q9NZM3 1697 aa8.58□□□□□ -1.04
PDE6A-205ENST00000617647 HMGB1P09429 215 aaKnown RBP8.57□□□□□ -1.04
PDE6A-205ENST00000617647 IRX1P78414 480 aaPredicted RBP8.57□□□□□ -1.04
PDE6A-205ENST00000617647 LRRC8AQ8IWT6 810 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.57□□□□□ -1.04
PDE6A-205ENST00000617647 ERCC6Q03468 1493 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 USP27XA6NNY8 438 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 AKAP17AQ02040 695 aaKnown RBP8.57□□□□□ -1.04
PDE6A-205ENST00000617647 AFAP1L1Q8TED9 768 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 CHMP7Q8WUX9 453 aaPredicted RBP8.57□□□□□ -1.04
PDE6A-205ENST00000617647 FHOD1Q9Y613 1164 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 TMCO5BA8MYB1 307 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 ATP8B1O43520 1251 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 LARP1BQ659C4 914 aaKnown RBP8.57□□□□□ -1.04
PDE6A-205ENST00000617647 MICALCLQ6ZW33 695 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 CNNM3Q8NE01 707 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 MRFAP1L1Q96HT8 127 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 RSRC1Q96IZ7 334 aaKnown RBP8.57□□□□□ -1.04
PDE6A-205ENST00000617647 FAN1Q9Y2M0 1017 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 GOLGA6L7A0A1B0GV03 622 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 KIF4AO95239 1232 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 SERPINC1P01008 464 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 ERCC3P19447 782 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 FOSBP53539 338 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 ZKSCAN8Q15776 578 aaPredicted RBP8.57□□□□□ -1.04
PDE6A-205ENST00000617647 CCDC70Q6NSX1 233 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 TFIP11Q9UBB9 837 aaKnown RBP8.57□□□□□ -1.04
PDE6A-205ENST00000617647 ORC3Q9UBD5 711 aaPredicted RBP8.57□□□□□ -1.04
PDE6A-205ENST00000617647 ZDHHC9Q9Y397 364 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 GRIN2AQ12879 1464 aa8.57□□□□□ -1.04
PDE6A-205ENST00000617647 ZNF608Q9ULD9 1512 aaPredicted RBP8.56□□□□□ -1.04
PDE6A-205ENST00000617647 ELF1P32519 619 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 CCT5P48643 541 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 CCDC158Q5M9N0 1113 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 CEP112Q8N8E3 955 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 ADCY10Q96PN6 1610 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 KIF2CQ99661 725 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 BICC1Q9H694 974 aaKnown RBP8.56□□□□□ -1.04
PDE6A-205ENST00000617647 PLEKHD1A6NEE1 506 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 PER1O15534 1290 aaPredicted RBP8.56□□□□□ -1.04
PDE6A-205ENST00000617647 NBPF9Q3BBW0 867 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 FBXW10Q5XX13 1052 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 CCDC83Q8IWF9 413 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 CCDC150Q8NCX0 1101 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 CCDC12Q8WUD4 166 aaPredicted RBP8.56□□□□□ -1.04
PDE6A-205ENST00000617647 CABS1Q96KC9 395 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 DDX19AQ9NUU7 478 aaKnown RBP8.56□□□□□ -1.04
PDE6A-205ENST00000617647 PUF60Q9UHX1 559 aaKnown RBP8.56□□□□□ -1.04
PDE6A-205ENST00000617647 CARMIL2Q6F5E8 1435 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 CEP85LQ5SZL2 805 aa8.56□□□□□ -1.04
PDE6A-205ENST00000617647 NUP153P49790 1475 aaKnown RBP8.55□□□□□ -1.04
PDE6A-205ENST00000617647 ABCC5O15440 1437 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms