RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 CTNNBL1Q8WYA6 563 aaPredicted RBP10.06□□□□□ -0.8
TTC28-208ENST00000612946 TSG101Q99816 390 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 CAMSAP2Q08AD1 1489 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 CASTP20810 708 aaKnown RBP10.06□□□□□ -0.8
TTC28-208ENST00000612946 MCM6Q14566 821 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 NEBLO76041 1014 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 C1orf141Q5JVX7 400 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 RPAP2Q8IXW5 612 aaPredicted RBP10.06□□□□□ -0.8
TTC28-208ENST00000612946 HLTFQ14527 1009 aaKnown RBP eCLIP10.06□□□□□ -0.89e-7■□□□□ 10.4
TTC28-208ENST00000612946 FOXD1Q16676 465 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 KRI1Q8N9T8 703 aaKnown RBP10.06□□□□□ -0.8
TTC28-208ENST00000612946 STMN1P16949 149 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 GCKP35557 465 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 RASSF2P50749 326 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 TMC6Q7Z403 805 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 ZNF526Q8TF50 670 aaPredicted RBP10.06□□□□□ -0.8
TTC28-208ENST00000612946 PCK1P35558 622 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 GRIPAP1Q4V328 841 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 ATRIPQ8WXE1 791 aa10.06□□□□□ -0.8
TTC28-208ENST00000612946 BMP15O95972 392 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 TRIM21P19474 475 aaKnown RBP10.05□□□□□ -0.8
TTC28-208ENST00000612946 KRT83P78385 493 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 HMG20BQ9P0W2 317 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 CYLC1P35663 651 aaPredicted RBP10.05□□□□□ -0.8
TTC28-208ENST00000612946 DNAJC8O75937 253 aaPredicted RBP10.05□□□□□ -0.8
TTC28-208ENST00000612946 TTC12Q9H892 705 aaPredicted RBP10.05□□□□□ -0.8
TTC28-208ENST00000612946 VEZTQ9HBM0 779 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 U3KPZ7 1027 aaPredicted RBP10.05□□□□□ -0.8
TTC28-208ENST00000612946 MAP4K4O95819 1239 aaPredicted RBP10.05□□□□□ -0.8
TTC28-208ENST00000612946 BRD3Q15059 726 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 RBM26Q5T8P6 1007 aaKnown RBP10.05□□□□□ -0.8
TTC28-208ENST00000612946 CCDC65Q8IXS2 484 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 RAB3IPQ96QF0 476 aaPredicted RBP10.05□□□□□ -0.8
TTC28-208ENST00000612946 IKBKGQ9Y6K9 419 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 CASQ2O14958 399 aaPredicted RBP10.05□□□□□ -0.8
TTC28-208ENST00000612946 FERP16591 822 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 PLCD3Q8N3E9 789 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 NACAP1Q9BZK3 213 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 IBTKQ9P2D0 1353 aaPredicted RBP10.05□□□□□ -0.8
TTC28-208ENST00000612946 CPLX4Q7Z7G2 160 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 AK9Q5TCS8 1911 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 ANKRD30BQ9BXX2 1392 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 TRIM4Q9C037 500 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 CCDC113Q9H0I3 377 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 RMND1Q9NWS8 449 aa10.05□□□□□ -0.8
TTC28-208ENST00000612946 RALGAPBQ86X10 1494 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 SRGAP3O43295 1099 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 CFAP58Q5T655 872 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 PPFIA4O75335 1185 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 DTNBP1Q96EV8 351 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 DRC1Q96MC2 740 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 IMPACTQ9P2X3 320 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 STX6O43752 255 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 AMPHP49418 695 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 ZNF445P59923 1031 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 HSP90AA5PQ58FG0 334 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 TRHP20396 242 aaPredicted RBP10.04□□□□□ -0.8
TTC28-208ENST00000612946 TEFQ10587 303 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 MAP3K21Q5TCX8 1036 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 NDC80O14777 642 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 ZSCAN26Q16670 478 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 CCDC178Q5BJE1 867 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 NCAPD3P42695 1498 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 KRT86O43790 486 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 KRT18P05783 430 aaKnown RBP10.04□□□□□ -0.8
TTC28-208ENST00000612946 INTS4Q96HW7 963 aaKnown RBP10.04□□□□□ -0.8
TTC28-208ENST00000612946 VCX3AQ9NNX9 186 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 CWC25Q9NXE8 425 aaPredicted RBP10.04□□□□□ -0.8
TTC28-208ENST00000612946 BCAP29Q9UHQ4 241 aa10.04□□□□□ -0.8
TTC28-208ENST00000612946 LMBR1Q8WVP7 490 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 FHOD3Q2V2M9 1422 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 GBP5Q96PP8 586 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 CCDC160A6NGH7 325 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 NEDD9Q14511 834 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 ARID4AP29374 1257 aaPredicted RBP10.03□□□□□ -0.8
TTC28-208ENST00000612946 SF3B2Q13435 895 aaKnown RBP10.03□□□□□ -0.8
TTC28-208ENST00000612946 MPHOSPH8Q99549 860 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 RAB34Q9BZG1 259 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 ADAMTS8Q9UP79 889 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 CEP104O60308 925 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 TRPC3Q13507 836 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 TRIM14Q14142 442 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 ARMC9Q7Z3E5 817 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 LRRC27Q9C0I9 530 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 TRIM35Q9UPQ4 493 aa10.03□□□□□ -0.8
TTC28-208ENST00000612946 SSFA2P28290 1259 aa10.02□□□□□ -0.8
TTC28-208ENST00000612946 ERBINQ96RT1 1412 aa10.02□□□□□ -0.8
TTC28-208ENST00000612946 NDUFAB1O14561 156 aa10.02□□□□□ -0.8
TTC28-208ENST00000612946 ATP2A1O14983 1001 aa10.02□□□□□ -0.8
TTC28-208ENST00000612946 JADE2Q9NQC1 790 aa10.02□□□□□ -0.8
TTC28-208ENST00000612946 RUFY4Q6ZNE9 571 aa10.02□□□□□ -0.81
TTC28-208ENST00000612946 NCOA1Q15788 1441 aa10.02□□□□□ -0.81
TTC28-208ENST00000612946 PPP2R1AP30153 589 aa10.02□□□□□ -0.81
TTC28-208ENST00000612946 KCNG4Q8TDN1 519 aa10.02□□□□□ -0.81
TTC28-208ENST00000612946 CNGA4Q8IV77 575 aa10.02□□□□□ -0.81
TTC28-208ENST00000612946 SEC62Q99442 399 aaKnown RBP10.02□□□□□ -0.81
TTC28-208ENST00000612946 GOLGA6CA6NDK9 693 aa10.02□□□□□ -0.81
TTC28-208ENST00000612946 GOLGA6DP0CG33 693 aa10.02□□□□□ -0.81
TTC28-208ENST00000612946 IQCDQ96DY2 449 aa10.02□□□□□ -0.81
TTC28-208ENST00000612946 GOPCQ9HD26 462 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms