RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 LSG1Q9H089 658 aaKnown RBP16.89■□□□□ 0.29
COL6A1-207ENST00000612273 LIMCH1Q9UPQ0 1083 aa16.89■□□□□ 0.29
COL6A1-207ENST00000612273 ZSCAN22P10073 491 aaPredicted RBP16.88■□□□□ 0.29
COL6A1-207ENST00000612273 RAD50Q92878 1312 aa16.88■□□□□ 0.29
COL6A1-207ENST00000612273 SPATA31D1Q6ZQQ2 1576 aa16.88■□□□□ 0.29
COL6A1-207ENST00000612273 ZMYND15Q9H091 742 aa16.88■□□□□ 0.29
COL6A1-207ENST00000612273 PDRG1Q9NUG6 133 aa16.88■□□□□ 0.29
COL6A1-207ENST00000612273 ADCY5O95622 1261 aa16.88■□□□□ 0.29
COL6A1-207ENST00000612273 SLC39A6Q13433 755 aa16.88■□□□□ 0.29
COL6A1-207ENST00000612273 BEND3Q5T5X7 828 aa16.88■□□□□ 0.29
COL6A1-207ENST00000612273 TFIP11Q9UBB9 837 aaKnown RBP16.87■□□□□ 0.29
COL6A1-207ENST00000612273 CHGBP05060 677 aa16.87■□□□□ 0.29
COL6A1-207ENST00000612273 TLR7Q9NYK1 1049 aaKnown RBP16.87■□□□□ 0.29
COL6A1-207ENST00000612273 KDRP35968 1356 aa16.86■□□□□ 0.29
COL6A1-207ENST00000612273 TAF6LQ9Y6J9 622 aa16.86■□□□□ 0.29
COL6A1-207ENST00000612273 RAB11FIP3O75154 756 aa16.86■□□□□ 0.29
COL6A1-207ENST00000612273 C3P01024 1663 aa16.85■□□□□ 0.29
COL6A1-207ENST00000612273 F13A1P00488 732 aa16.85■□□□□ 0.29
COL6A1-207ENST00000612273 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.85■□□□□ 0.29
COL6A1-207ENST00000612273 GLRX3O76003 335 aaKnown RBP16.85■□□□□ 0.29
COL6A1-207ENST00000612273 PHF14O94880 888 aa16.85■□□□□ 0.29
COL6A1-207ENST00000612273 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.85■□□□□ 0.29
COL6A1-207ENST00000612273 TECPR2O15040 1411 aa16.85■□□□□ 0.29
COL6A1-207ENST00000612273 RPAP1Q9BWH6 1393 aaPredicted RBP16.84■□□□□ 0.29
COL6A1-207ENST00000612273 CKAP2LQ8IYA6 745 aa16.84■□□□□ 0.29
COL6A1-207ENST00000612273 PHF8Q9UPP1 1060 aa16.84■□□□□ 0.29
COL6A1-207ENST00000612273 CYP46A1Q9Y6A2 500 aa16.84■□□□□ 0.29
COL6A1-207ENST00000612273 CEBPZQ03701 1054 aaKnown RBP16.84■□□□□ 0.29
COL6A1-207ENST00000612273 ME3Q16798 604 aa16.84■□□□□ 0.29
COL6A1-207ENST00000612273 C1orf141Q5JVX7 400 aa16.84■□□□□ 0.29
COL6A1-207ENST00000612273 FSD1Q9BTV5 496 aa16.84■□□□□ 0.29
COL6A1-207ENST00000612273 ECHDC1Q9NTX5 307 aa16.84■□□□□ 0.29
COL6A1-207ENST00000612273 POLA2Q14181 598 aa16.83■□□□□ 0.29
COL6A1-207ENST00000612273 NAP1L2Q9ULW6 460 aaPredicted RBP16.83■□□□□ 0.29
COL6A1-207ENST00000612273 HTATSF1O43719 755 aaKnown RBP16.83■□□□□ 0.28
COL6A1-207ENST00000612273 ZNF500O60304 480 aaPredicted RBP16.83■□□□□ 0.28
COL6A1-207ENST00000612273 KIAA2012Q0VF49 1180 aa16.83■□□□□ 0.28
COL6A1-207ENST00000612273 CCDC183Q5T5S1 534 aa16.83■□□□□ 0.28
COL6A1-207ENST00000612273 LARP1BQ659C4 914 aaKnown RBP16.83■□□□□ 0.28
COL6A1-207ENST00000612273 TTC14Q96N46 770 aa16.83■□□□□ 0.28
COL6A1-207ENST00000612273 RBM8AQ9Y5S9 174 aaKnown RBP16.83■□□□□ 0.28
COL6A1-207ENST00000612273 HYPKQ9NX55 129 aa16.83■□□□□ 0.28
COL6A1-207ENST00000612273 SETD1AO15047 1707 aaKnown RBP16.82■□□□□ 0.28
COL6A1-207ENST00000612273 ITSN1Q15811 1721 aa16.82■□□□□ 0.28
COL6A1-207ENST00000612273 ZKSCAN1P17029 563 aaPredicted RBP16.82■□□□□ 0.28
COL6A1-207ENST00000612273 NMIQ13287 307 aaPredicted RBP16.82■□□□□ 0.28
COL6A1-207ENST00000612273 LRRC2Q9BYS8 371 aa16.82■□□□□ 0.28
COL6A1-207ENST00000612273 MON2Q7Z3U7 1717 aa16.82■□□□□ 0.28
COL6A1-207ENST00000612273 G3BP1Q13283 466 aaKnown RBP eCLIP16.82■□□□□ 0.28
COL6A1-207ENST00000612273 EAF2Q96CJ1 260 aaPredicted RBP16.82■□□□□ 0.28
COL6A1-207ENST00000612273 DDX11Q96FC9 970 aa16.82■□□□□ 0.28
COL6A1-207ENST00000612273 BICC1Q9H694 974 aaKnown RBP16.82■□□□□ 0.28
COL6A1-207ENST00000612273 ZC3H6P61129 1189 aaKnown RBP16.81■□□□□ 0.28
COL6A1-207ENST00000612273 SUCLG2Q96I99 432 aa16.81■□□□□ 0.28
COL6A1-207ENST00000612273 REREQ9P2R6 1566 aa16.81■□□□□ 0.28
COL6A1-207ENST00000612273 RIC3Q7Z5B4 369 aa16.81■□□□□ 0.28
COL6A1-207ENST00000612273 RUFY2Q8WXA3 655 aa16.81■□□□□ 0.28
COL6A1-207ENST00000612273 TPCN1Q9ULQ1 816 aa16.81■□□□□ 0.28
COL6A1-207ENST00000612273 HS1BP3Q53T59 392 aa16.81■□□□□ 0.28
COL6A1-207ENST00000612273 UBE2HP62256 183 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 CDC37L1Q7L3B6 337 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 DBF4Q9UBU7 674 aaPredicted RBP16.8■□□□□ 0.28
COL6A1-207ENST00000612273 TBX22Q9Y458 520 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 TCHHQ07283 1943 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 PLEKHG1Q9ULL1 1385 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 GOLGA6L4A6NEF3 574 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 FBXW7Q969H0 707 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 PRDM10Q9NQV6 1147 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 MTMR6Q9Y217 621 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 SSH2Q76I76 1423 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 A0A0D9SFI3 127 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 HSP90AB4PQ58FF6 505 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 GPATCH3Q96I76 525 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 ORAI2Q96SN7 254 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 PDCL3Q9H2J4 239 aa16.8■□□□□ 0.28
COL6A1-207ENST00000612273 THEMISQ8N1K5 641 aaPredicted RBP16.79■□□□□ 0.28
COL6A1-207ENST00000612273 DNAJC2Q99543 621 aaKnown RBP16.79■□□□□ 0.28
COL6A1-207ENST00000612273 SLFNL1Q499Z3 407 aa16.79■□□□□ 0.28
COL6A1-207ENST00000612273 CREB3L3Q68CJ9 461 aa16.79■□□□□ 0.28
COL6A1-207ENST00000612273 ADCY9O60503 1353 aa16.79■□□□□ 0.28
COL6A1-207ENST00000612273 FGD1P98174 961 aa16.78■□□□□ 0.28
COL6A1-207ENST00000612273 AP5Z1O43299 807 aa16.78■□□□□ 0.28
COL6A1-207ENST00000612273 SASH1O94885 1247 aa16.78■□□□□ 0.28
COL6A1-207ENST00000612273 CCDC129Q6ZRS4 1044 aa16.78■□□□□ 0.28
COL6A1-207ENST00000612273 IP6K1Q92551 441 aa16.78■□□□□ 0.28
COL6A1-207ENST00000612273 LIG1P18858 919 aa16.78■□□□□ 0.28
COL6A1-207ENST00000612273 ST3GAL1Q11201 340 aa16.78■□□□□ 0.28
COL6A1-207ENST00000612273 CSPP1Q1MSJ5 1256 aa16.78■□□□□ 0.28
COL6A1-207ENST00000612273 PLEKHO1Q53GL0 409 aaPredicted RBP16.78■□□□□ 0.28
COL6A1-207ENST00000612273 DRC7Q8IY82 874 aa16.78■□□□□ 0.28
COL6A1-207ENST00000612273 ATP5J2-PTCD1G3V325 749 aa16.77■□□□□ 0.28
COL6A1-207ENST00000612273 PTCD1O75127 700 aaKnown RBP16.77■□□□□ 0.28
COL6A1-207ENST00000612273 ZNF589Q86UQ0 364 aaPredicted RBP16.77■□□□□ 0.28
COL6A1-207ENST00000612273 ATP6V1DQ9Y5K8 247 aa16.77■□□□□ 0.28
COL6A1-207ENST00000612273 AGLP35573 1532 aa16.77■□□□□ 0.28
COL6A1-207ENST00000612273 HSP90B1P14625 803 aaKnown RBP16.77■□□□□ 0.27
COL6A1-207ENST00000612273 NOLC1Q14978 699 aaKnown RBP eCLIP16.77■□□□□ 0.27
COL6A1-207ENST00000612273 LUZP1Q86V48 1076 aa16.77■□□□□ 0.27
COL6A1-207ENST00000612273 SEC62Q99442 399 aaKnown RBP16.77■□□□□ 0.27
COL6A1-207ENST00000612273 CCDC171Q6TFL3 1326 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms