RNA–Protein interactions for RNA: ENST00000604740.5

LAMA4-222, Transcript of laminin subunit alpha 4, human

TSL 2

Gene LAMA4, Length 694 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LAMA4-222	ENST00000604740	CHSY3	Q70JA7	882 aa		8.49	□□□□□ -1.05
LAMA4-222	ENST00000604740	ALYREF	Q86V81	257 aa	Known RBP	8.49	□□□□□ -1.05
LAMA4-222	ENST00000604740	OGFOD1	Q8N543	542 aa		8.49	□□□□□ -1.05
LAMA4-222	ENST00000604740	RHPN1	Q8TCX5	695 aa		8.49	□□□□□ -1.05
LAMA4-222	ENST00000604740	CLUAP1	Q96AJ1	413 aa		8.49	□□□□□ -1.05
LAMA4-222	ENST00000604740	SUV39H2	Q9H5I1	410 aa		8.49	□□□□□ -1.05
LAMA4-222	ENST00000604740	NEUROD4	Q9HD90	331 aa		8.49	□□□□□ -1.05
LAMA4-222	ENST00000604740	MKRN1	Q9UHC7	482 aa	Known RBP	8.49	□□□□□ -1.05
LAMA4-222	ENST00000604740	KLF15	Q9UIH9	416 aa		8.49	□□□□□ -1.05
LAMA4-222	ENST00000604740	PSMA6	P60900	246 aa	Known RBP	8.48	□□□□□ -1.05
LAMA4-222	ENST00000604740	LAMC2	Q13753	1193 aa		8.48	□□□□□ -1.05
LAMA4-222	ENST00000604740	ZNF594	Q96JF6	807 aa	Predicted RBP	8.48	□□□□□ -1.05
LAMA4-222	ENST00000604740	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	8.48	□□□□□ -1.05
LAMA4-222	ENST00000604740	CHMP3	Q9Y3E7	222 aa		8.48	□□□□□ -1.05
LAMA4-222	ENST00000604740	LARGE2	Q8N3Y3	721 aa		8.47	□□□□□ -1.05
LAMA4-222	ENST00000604740	RBM19	Q9Y4C8	960 aa	Known RBP	8.47	□□□□□ -1.05
LAMA4-222	ENST00000604740	PALM3	A6NDB9	673 aa	Predicted RBP	8.46	□□□□□ -1.06
LAMA4-222	ENST00000604740	PROSER2	Q86WR7	435 aa	Predicted RBP	8.46	□□□□□ -1.06
LAMA4-222	ENST00000604740	GLMN	Q92990	594 aa		8.46	□□□□□ -1.06
LAMA4-222	ENST00000604740	GPC6	Q9Y625	555 aa	Predicted RBP	8.46	□□□□□ -1.06
LAMA4-222	ENST00000604740	SYT9	Q86SS6	491 aa		8.45	□□□□□ -1.06
LAMA4-222	ENST00000604740	SIX5	Q8N196	739 aa		8.45	□□□□□ -1.06
LAMA4-222	ENST00000604740	TSEN2	Q8NCE0	465 aa	Known RBP	8.45	□□□□□ -1.06
LAMA4-222	ENST00000604740	NOP53	Q9NZM5	478 aa	Known RBP	8.45	□□□□□ -1.06
LAMA4-222	ENST00000604740	SFI1	A8K8P3	1242 aa		8.44	□□□□□ -1.06
LAMA4-222	ENST00000604740		M0R2N6	131 aa		8.44	□□□□□ -1.06
LAMA4-222	ENST00000604740	HSH2D	Q96JZ2	352 aa		8.44	□□□□□ -1.06
LAMA4-222	ENST00000604740	PHACTR1	Q9C0D0	580 aa		8.44	□□□□□ -1.06
LAMA4-222	ENST00000604740	HCN4	Q9Y3Q4	1203 aa		8.44	□□□□□ -1.06
LAMA4-222	ENST00000604740	SFSWAP	Q12872	951 aa	Known RBP	8.43	□□□□□ -1.06
LAMA4-222	ENST00000604740	TMEM132A	Q24JP5	1023 aa		8.43	□□□□□ -1.06
LAMA4-222	ENST00000604740	C7orf43	Q8WVR3	580 aa		8.43	□□□□□ -1.06
LAMA4-222	ENST00000604740	ELOA3C	A0A087WX78	387 aa	Predicted RBP	8.42	□□□□□ -1.06
LAMA4-222	ENST00000604740	ELOA3D	A6NLF2	546 aa	Predicted RBP	8.42	□□□□□ -1.06
LAMA4-222	ENST00000604740	PPP1R12B	O60237	982 aa	Predicted RBP	8.42	□□□□□ -1.06
LAMA4-222	ENST00000604740	RASA1	P20936	1047 aa		8.42	□□□□□ -1.06
LAMA4-222	ENST00000604740	HIRA	P54198	1017 aa	Predicted RBP	8.42	□□□□□ -1.06
LAMA4-222	ENST00000604740	ELOA3B	Q3SY89	546 aa		8.42	□□□□□ -1.06
LAMA4-222	ENST00000604740	C1orf53	Q5VUE5	145 aa		8.42	□□□□□ -1.06
LAMA4-222	ENST00000604740	FNBP4	Q8N3X1	1017 aa	Predicted RBP	8.42	□□□□□ -1.06
LAMA4-222	ENST00000604740	ELOA3	Q8NG57	546 aa		8.42	□□□□□ -1.06
LAMA4-222	ENST00000604740	TFIP11	Q9UBB9	837 aa	Known RBP	8.42	□□□□□ -1.06
LAMA4-222	ENST00000604740	MAFB	Q9Y5Q3	323 aa	Predicted RBP	8.42	□□□□□ -1.06
LAMA4-222	ENST00000604740	ADAM23	O75077	832 aa		8.41	□□□□□ -1.06
LAMA4-222	ENST00000604740	ALAS2	P22557	587 aa		8.41	□□□□□ -1.06
LAMA4-222	ENST00000604740	CEP63	Q96MT8	703 aa		8.41	□□□□□ -1.06
LAMA4-222	ENST00000604740	SLC30A3	Q99726	388 aa		8.41	□□□□□ -1.06
LAMA4-222	ENST00000604740	BRD7	Q9NPI1	651 aa		8.41	□□□□□ -1.06
LAMA4-222	ENST00000604740	DKK1	O94907	266 aa		8.4	□□□□□ -1.06
LAMA4-222	ENST00000604740	BAG6	P46379	1132 aa		8.4	□□□□□ -1.06
LAMA4-222	ENST00000604740	POTEA	Q6S8J7	498 aa		8.4	□□□□□ -1.06
LAMA4-222	ENST00000604740	RAB44	Q7Z6P3	723 aa	Predicted RBP	8.4	□□□□□ -1.06
LAMA4-222	ENST00000604740	ANKIB1	Q9P2G1	1089 aa		8.4	□□□□□ -1.06
LAMA4-222	ENST00000604740	C1QTNF9B	B2RNN3	333 aa		8.39	□□□□□ -1.07
LAMA4-222	ENST00000604740	C21orf2	O43822	256 aa		8.39	□□□□□ -1.07
LAMA4-222	ENST00000604740	SIN3B	O75182	1162 aa		8.39	□□□□□ -1.07
LAMA4-222	ENST00000604740	SEC13	P55735	322 aa		8.39	□□□□□ -1.07
LAMA4-222	ENST00000604740	SPEM2	Q0P670	501 aa		8.39	□□□□□ -1.07
LAMA4-222	ENST00000604740	ZNF280C	Q8ND82	737 aa		8.39	□□□□□ -1.07
LAMA4-222	ENST00000604740	CHMP7	Q8WUX9	453 aa	Predicted RBP	8.39	□□□□□ -1.07
LAMA4-222	ENST00000604740	SCG3	Q8WXD2	468 aa	Known RBP	8.39	□□□□□ -1.07
LAMA4-222	ENST00000604740	TRIM11	Q96F44	468 aa		8.39	□□□□□ -1.07
LAMA4-222	ENST00000604740	TYRO3	Q06418	890 aa		8.38	□□□□□ -1.07
LAMA4-222	ENST00000604740	NEUROD1	Q13562	356 aa		8.38	□□□□□ -1.07
LAMA4-222	ENST00000604740	LARP1	Q6PKG0	1096 aa	Known RBP	8.38	□□□□□ -1.07
LAMA4-222	ENST00000604740	CD163	Q86VB7	1156 aa		8.38	□□□□□ -1.07
LAMA4-222	ENST00000604740	ALDH16A1	Q8IZ83	802 aa		8.38	□□□□□ -1.07
LAMA4-222	ENST00000604740	NGLY1	Q96IV0	654 aa		8.38	□□□□□ -1.07
LAMA4-222	ENST00000604740	SUSD3	Q96L08	255 aa		8.38	□□□□□ -1.07
LAMA4-222	ENST00000604740	CALR3	Q96L12	384 aa	Known RBP	8.38	□□□□□ -1.07
LAMA4-222	ENST00000604740	PLVAP	Q9BX97	442 aa		8.38	□□□□□ -1.07
LAMA4-222	ENST00000604740	ATAD2	Q6PL18	1390 aa		8.37	□□□□□ -1.07
LAMA4-222	ENST00000604740		K7ELQ4	463 aa	Predicted RBP	8.37	□□□□□ -1.07
LAMA4-222	ENST00000604740	CHRNA4	P43681	627 aa		8.37	□□□□□ -1.07
LAMA4-222	ENST00000604740	ADARB2-AS1	A8MUL3	147 aa		8.36	□□□□□ -1.07
LAMA4-222	ENST00000604740	TNFRSF25	Q93038	417 aa		8.36	□□□□□ -1.07
LAMA4-222	ENST00000604740	MDFI	Q99750	246 aa		8.36	□□□□□ -1.07
LAMA4-222	ENST00000604740	HINFP	Q9BQA5	517 aa		8.36	□□□□□ -1.07
LAMA4-222	ENST00000604740	C2orf49	Q9BVC5	232 aa	Predicted RBP	8.36	□□□□□ -1.07
LAMA4-222	ENST00000604740	PPP1R12C	Q9BZL4	782 aa		8.36	□□□□□ -1.07
LAMA4-222	ENST00000604740	KCNH4	Q9UQ05	1017 aa		8.36	□□□□□ -1.07
LAMA4-222	ENST00000604740		M0R082	166 aa		8.35	□□□□□ -1.07
LAMA4-222	ENST00000604740	LGR5	O75473	907 aa		8.35	□□□□□ -1.07
LAMA4-222	ENST00000604740	FURIN	P09958	794 aa		8.35	□□□□□ -1.07
LAMA4-222	ENST00000604740	ADH7	P40394	386 aa		8.35	□□□□□ -1.07
LAMA4-222	ENST00000604740	CRTC2	Q53ET0	693 aa	Predicted RBP	8.35	□□□□□ -1.07
LAMA4-222	ENST00000604740	STAG2	Q8N3U4	1231 aa		8.35	□□□□□ -1.07
LAMA4-222	ENST00000604740	GAS2L2	Q8NHY3	880 aa		8.35	□□□□□ -1.07
LAMA4-222	ENST00000604740	ZNF417	Q8TAU3	575 aa		8.35	□□□□□ -1.07
LAMA4-222	ENST00000604740	ZNF587	Q96SQ5	575 aa	Predicted RBP	8.35	□□□□□ -1.07
LAMA4-222	ENST00000604740	SPATA31C1	P0DKV0	1188 aa		8.34	□□□□□ -1.07
LAMA4-222	ENST00000604740	KCNQ4	P56696	695 aa		8.34	□□□□□ -1.07
LAMA4-222	ENST00000604740	DPYD	Q12882	1025 aa		8.34	□□□□□ -1.07
LAMA4-222	ENST00000604740	HIF1A	Q16665	826 aa		8.34	□□□□□ -1.07
LAMA4-222	ENST00000604740	BHMT	Q93088	406 aa		8.34	□□□□□ -1.07
LAMA4-222	ENST00000604740		A6NJR5	290 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	SPDYE3	A6NKU9	549 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	USP17L15	C9J2P7	530 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	USP17L10	C9JJH3	530 aa		8.33	□□□□□ -1.08
LAMA4-222	ENST00000604740	USP17L13	C9JLJ4	530 aa		8.33	□□□□□ -1.08

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