RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 PHACTR3Q96KR7 559 aa12.74□□□□□ -0.37
VRK3-224ENST00000601849 RSPH6AQ9H0K4 717 aa12.74□□□□□ -0.37
VRK3-224ENST00000601849 USP16Q9Y5T5 823 aa12.74□□□□□ -0.37
VRK3-224ENST00000601849 VIRMAQ69YN4 1812 aaKnown RBP12.74□□□□□ -0.37
VRK3-224ENST00000601849 UBR2Q8IWV8 1755 aa12.74□□□□□ -0.37
VRK3-224ENST00000601849 RGL2O15211 777 aa12.73□□□□□ -0.37
VRK3-224ENST00000601849 NPR1P16066 1061 aa12.73□□□□□ -0.37
VRK3-224ENST00000601849 ALDH1B1P30837 517 aa12.73□□□□□ -0.37
VRK3-224ENST00000601849 PRPF40BQ6NWY9 871 aaKnown RBP12.73□□□□□ -0.37
VRK3-224ENST00000601849 PNNQ9H307 717 aaKnown RBP12.73□□□□□ -0.37
VRK3-224ENST00000601849 TAF7Q15545 349 aaPredicted RBP12.72□□□□□ -0.37
VRK3-224ENST00000601849 CCDC93Q567U6 631 aa12.72□□□□□ -0.37
VRK3-224ENST00000601849 CHADLQ6NUI6 762 aa12.72□□□□□ -0.37
VRK3-224ENST00000601849 RTKN2Q8IZC4 609 aa12.72□□□□□ -0.37
VRK3-224ENST00000601849 PNISRQ8TF01 805 aaKnown RBP12.72□□□□□ -0.37
VRK3-224ENST00000601849 NIP7Q9Y221 180 aaKnown RBP eCLIP12.72□□□□□ -0.37
VRK3-224ENST00000601849 DLEC1Q9Y238 1755 aa12.71□□□□□ -0.37
VRK3-224ENST00000601849 KCNQ3O43525 872 aa12.71□□□□□ -0.37
VRK3-224ENST00000601849 PRELPP51888 382 aa12.71□□□□□ -0.37
VRK3-224ENST00000601849 MCM10Q7L590 875 aa12.71□□□□□ -0.37
VRK3-224ENST00000601849 NYXQ9GZU5 481 aa12.71□□□□□ -0.37
VRK3-224ENST00000601849 COL3A1P02461 1466 aaPredicted RBP12.71□□□□□ -0.38
VRK3-224ENST00000601849 DDNO94850 711 aaPredicted RBP12.7□□□□□ -0.38
VRK3-224ENST00000601849 PPP2R1AP30153 589 aa12.7□□□□□ -0.38
VRK3-224ENST00000601849 TNS4Q8IZW8 715 aa12.7□□□□□ -0.38
VRK3-224ENST00000601849 FAM177BA6PVY3 158 aa12.69□□□□□ -0.38
VRK3-224ENST00000601849 POTECB2RU33 542 aa12.69□□□□□ -0.38
VRK3-224ENST00000601849 PIP4K2AP48426 406 aaPredicted RBP12.69□□□□□ -0.38
VRK3-224ENST00000601849 FKBP4Q02790 459 aaKnown RBP eCLIP12.69□□□□□ -0.38
VRK3-224ENST00000601849 COL13A1Q5TAT6 717 aaPredicted RBP12.69□□□□□ -0.38
VRK3-224ENST00000601849 TMX4Q9H1E5 349 aaPredicted RBP12.69□□□□□ -0.38
VRK3-224ENST00000601849 CREBZFQ9NS37 354 aa12.69□□□□□ -0.38
VRK3-224ENST00000601849 GRIPAP1Q4V328 841 aa12.68□□□□□ -0.38
VRK3-224ENST00000601849 KIF6Q6ZMV9 814 aa12.68□□□□□ -0.38
VRK3-224ENST00000601849 CLEC11AQ9Y240 323 aa12.68□□□□□ -0.38
VRK3-224ENST00000601849 SCN7AQ01118 1682 aa12.67□□□□□ -0.38
VRK3-224ENST00000601849 PRAMEF22A3QJZ6 481 aa12.67□□□□□ -0.38
VRK3-224ENST00000601849 KLRG2A4D1S0 409 aaPredicted RBP12.67□□□□□ -0.38
VRK3-224ENST00000601849 HSPA1AP0DMV8 641 aaKnown RBP12.67□□□□□ -0.38
VRK3-224ENST00000601849 HSPA1BP0DMV9 641 aaKnown RBP12.67□□□□□ -0.38
VRK3-224ENST00000601849 DCTN1Q14203 1278 aa12.67□□□□□ -0.38
VRK3-224ENST00000601849 CC2D2BQ6DHV5 1058 aa12.67□□□□□ -0.38
VRK3-224ENST00000601849 PNMA8AQ86V59 439 aaPredicted RBP12.67□□□□□ -0.38
VRK3-224ENST00000601849 LDHDQ86WU2 507 aa12.67□□□□□ -0.38
VRK3-224ENST00000601849 JDP2Q8WYK2 163 aa12.67□□□□□ -0.38
VRK3-224ENST00000601849 TIAM2Q8IVF5 1701 aa12.67□□□□□ -0.38
VRK3-224ENST00000601849 CCDC88AQ3V6T2 1871 aa12.67□□□□□ -0.38
VRK3-224ENST00000601849 SIPA1L3O60292 1781 aaPredicted RBP12.66□□□□□ -0.38
VRK3-224ENST00000601849 ERVV-1B6SEH8 477 aa12.66□□□□□ -0.38
VRK3-224ENST00000601849 NGEFQ8N5V2 710 aa12.66□□□□□ -0.38
VRK3-224ENST00000601849 C7orf43Q8WVR3 580 aa12.66□□□□□ -0.38
VRK3-224ENST00000601849 MAPK8IP3Q9UPT6 1336 aa12.65□□□□□ -0.38
VRK3-224ENST00000601849 NBPF26B4DH59 902 aa12.65□□□□□ -0.38
VRK3-224ENST00000601849 EAPPQ56P03 285 aaPredicted RBP12.65□□□□□ -0.38
VRK3-224ENST00000601849 NBPF10Q6P3W6 841 aaKnown RBP12.65□□□□□ -0.38
VRK3-224ENST00000601849 NBPF15Q8N660 670 aa12.65□□□□□ -0.38
VRK3-224ENST00000601849 RPGRQ92834 1020 aaKnown RBP12.65□□□□□ -0.38
VRK3-224ENST00000601849 L3MBTL3Q96JM7 780 aaPredicted RBP12.65□□□□□ -0.38
VRK3-224ENST00000601849 TAF1DQ9H5J8 278 aaPredicted RBP12.65□□□□□ -0.38
VRK3-224ENST00000601849 ZNF277Q9NRM2 450 aaPredicted RBP12.65□□□□□ -0.38
VRK3-224ENST00000601849 HACL1Q9UJ83 578 aa12.65□□□□□ -0.38
VRK3-224ENST00000601849 RRP7AQ9Y3A4 280 aaKnown RBP12.65□□□□□ -0.38
VRK3-224ENST00000601849 ANKRD31Q8N7Z5 1873 aa12.65□□□□□ -0.38
VRK3-224ENST00000601849 FER1L6Q2WGJ9 1857 aa12.64□□□□□ -0.39
VRK3-224ENST00000601849 CAPN15O75808 1086 aa12.64□□□□□ -0.39
VRK3-224ENST00000601849 IARSP41252 1262 aaKnown RBP12.64□□□□□ -0.39
VRK3-224ENST00000601849 EIF6P56537 245 aaKnown RBP12.64□□□□□ -0.39
VRK3-224ENST00000601849 SYNE4Q8N205 404 aa12.64□□□□□ -0.39
VRK3-224ENST00000601849 AIDAQ96BJ3 306 aa12.64□□□□□ -0.39
VRK3-224ENST00000601849 MIS18AQ9NYP9 233 aa12.64□□□□□ -0.39
VRK3-224ENST00000601849 MKRN1Q9UHC7 482 aaKnown RBP12.64□□□□□ -0.39
VRK3-224ENST00000601849 DICER1Q9UPY3 1922 aaKnown RBP12.63□□□□□ -0.39
VRK3-224ENST00000601849 TMEM88BA6NKF7 163 aa12.63□□□□□ -0.39
VRK3-224ENST00000601849 HLFQ16534 295 aa12.63□□□□□ -0.39
VRK3-224ENST00000601849 PPP1R42Q7Z4L9 355 aa12.63□□□□□ -0.39
VRK3-224ENST00000601849 GPC2Q8N158 579 aa12.63□□□□□ -0.39
VRK3-224ENST00000601849 RBM17Q96I25 401 aaKnown RBP12.63□□□□□ -0.39
VRK3-224ENST00000601849 MAP3K15Q6ZN16 1313 aa12.62□□□□□ -0.39
VRK3-224ENST00000601849 SLX4Q8IY92 1834 aa12.62□□□□□ -0.39
VRK3-224ENST00000601849 MYL6BP14649 208 aa12.62□□□□□ -0.39
VRK3-224ENST00000601849 LMOD1P29536 600 aaPredicted RBP12.62□□□□□ -0.39
VRK3-224ENST00000601849 EPHX2P34913 555 aa12.62□□□□□ -0.39
VRK3-224ENST00000601849 PSMD1Q99460 953 aa12.62□□□□□ -0.39
VRK3-224ENST00000601849 BCORQ6W2J9 1755 aa12.61□□□□□ -0.39
VRK3-224ENST00000601849 FZD9O00144 591 aa12.61□□□□□ -0.39
VRK3-224ENST00000601849 EIF4A1P60842 406 aaKnown RBP12.61□□□□□ -0.39
VRK3-224ENST00000601849 NFE2L2Q16236 605 aa12.61□□□□□ -0.39
VRK3-224ENST00000601849 NLRP3Q96P20 1036 aa12.61□□□□□ -0.39
VRK3-224ENST00000601849 COL11A2P13942 1736 aaPredicted RBP12.61□□□□□ -0.39
VRK3-224ENST00000601849 ERBB4Q15303 1308 aa12.61□□□□□ -0.39
VRK3-224ENST00000601849 POTEIP0CG38 1075 aa12.6□□□□□ -0.39
VRK3-224ENST00000601849 POTEJP0CG39 1038 aa12.6□□□□□ -0.39
VRK3-224ENST00000601849 CRY2Q49AN0 593 aa12.6□□□□□ -0.39
VRK3-224ENST00000601849 PARP10Q53GL7 1025 aa12.6□□□□□ -0.39
VRK3-224ENST00000601849 NUTM1Q86Y26 1132 aa12.6□□□□□ -0.39
VRK3-224ENST00000601849 CNTROBQ8N137 903 aa12.6□□□□□ -0.39
VRK3-224ENST00000601849 ZBTB3Q9H5J0 574 aa12.6□□□□□ -0.39
VRK3-224ENST00000601849 GJA3Q9Y6H8 435 aa12.6□□□□□ -0.39
VRK3-224ENST00000601849 PASKQ96RG2 1323 aa12.6□□□□□ -0.39
VRK3-224ENST00000601849 CNTNAP1P78357 1384 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms