RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 LMNB1P20700 586 aa11.69□□□□□ -0.54
SHKBP1-220ENST00000599716 EIF5P55010 431 aaKnown RBP11.69□□□□□ -0.54
SHKBP1-220ENST00000599716 SIPA1L3O60292 1781 aaPredicted RBP11.69□□□□□ -0.54
SHKBP1-220ENST00000599716 SCN7AQ01118 1682 aa11.68□□□□□ -0.54
SHKBP1-220ENST00000599716 POTECB2RU33 542 aa11.68□□□□□ -0.54
SHKBP1-220ENST00000599716 H0YIN7 160 aa11.68□□□□□ -0.54
SHKBP1-220ENST00000599716 PRR5LQ6MZQ0 368 aa11.68□□□□□ -0.54
SHKBP1-220ENST00000599716 HEG1Q9ULI3 1381 aa11.67□□□□□ -0.54
SHKBP1-220ENST00000599716 PASKQ96RG2 1323 aa11.67□□□□□ -0.54
SHKBP1-220ENST00000599716 SZT2Q5T011 3432 aa11.67□□□□□ -0.54
SHKBP1-220ENST00000599716 STARD3NLO95772 234 aa11.67□□□□□ -0.54
SHKBP1-220ENST00000599716 POTEIP0CG38 1075 aa11.67□□□□□ -0.54
SHKBP1-220ENST00000599716 POTEJP0CG39 1038 aa11.67□□□□□ -0.54
SHKBP1-220ENST00000599716 TEFQ10587 303 aa11.67□□□□□ -0.54
SHKBP1-220ENST00000599716 ZNF790Q6PG37 636 aa11.67□□□□□ -0.54
SHKBP1-220ENST00000599716 VSIG10Q8N0Z9 540 aa11.67□□□□□ -0.54
SHKBP1-220ENST00000599716 PHACTR3Q96KR7 559 aa11.67□□□□□ -0.54
SHKBP1-220ENST00000599716 SLX4Q8IY92 1834 aa11.67□□□□□ -0.54
SHKBP1-220ENST00000599716 TMEM88BA6NKF7 163 aa11.66□□□□□ -0.54
SHKBP1-220ENST00000599716 GNAT3A8MTJ3 354 aa11.66□□□□□ -0.54
SHKBP1-220ENST00000599716 MCOLN1Q9GZU1 580 aa11.66□□□□□ -0.54
SHKBP1-220ENST00000599716 FER1L6Q2WGJ9 1857 aa11.66□□□□□ -0.54
SHKBP1-220ENST00000599716 RASSF10A6NK89 507 aa11.65□□□□□ -0.54
SHKBP1-220ENST00000599716 CAMTA2O94983 1202 aa11.65□□□□□ -0.54
SHKBP1-220ENST00000599716 OLFM4Q6UX06 510 aa11.65□□□□□ -0.54
SHKBP1-220ENST00000599716 GCC1Q96CN9 775 aa11.65□□□□□ -0.54
SHKBP1-220ENST00000599716 USP16Q9Y5T5 823 aa11.65□□□□□ -0.54
SHKBP1-220ENST00000599716 FAM177BA6PVY3 158 aa11.64□□□□□ -0.55
SHKBP1-220ENST00000599716 PRKAR2BP31323 418 aa11.64□□□□□ -0.55
SHKBP1-220ENST00000599716 DCTN1Q14203 1278 aa11.64□□□□□ -0.55
SHKBP1-220ENST00000599716 ERFEQ4G0M1 354 aa11.64□□□□□ -0.55
SHKBP1-220ENST00000599716 BEGAINQ9BUH8 593 aa11.64□□□□□ -0.55
SHKBP1-220ENST00000599716 BCORQ6W2J9 1755 aa11.64□□□□□ -0.55
SHKBP1-220ENST00000599716 DICER1Q9UPY3 1922 aaKnown RBP11.63□□□□□ -0.55
SHKBP1-220ENST00000599716 A0A087WZG4 1122 aa11.63□□□□□ -0.55
SHKBP1-220ENST00000599716 BTBD11A6QL63 1104 aa11.63□□□□□ -0.55
SHKBP1-220ENST00000599716 NPHP1O15259 732 aa11.63□□□□□ -0.55
SHKBP1-220ENST00000599716 DDNO94850 711 aaPredicted RBP11.63□□□□□ -0.55
SHKBP1-220ENST00000599716 MCM10Q7L590 875 aa11.63□□□□□ -0.55
SHKBP1-220ENST00000599716 DZIP3Q86Y13 1208 aaKnown RBP11.63□□□□□ -0.55
SHKBP1-220ENST00000599716 CNBD1Q8NA66 436 aa11.63□□□□□ -0.55
SHKBP1-220ENST00000599716 GAS2L2Q8NHY3 880 aa11.63□□□□□ -0.55
SHKBP1-220ENST00000599716 FMNL2Q96PY5 1086 aa11.63□□□□□ -0.55
SHKBP1-220ENST00000599716 BRIP1Q9BX63 1249 aa11.63□□□□□ -0.55
SHKBP1-220ENST00000599716 MKI67P46013 3256 aaKnown RBP11.62□□□□□ -0.55
SHKBP1-220ENST00000599716 PDE6BP35913 854 aa11.62□□□□□ -0.55
SHKBP1-220ENST00000599716 IL6STP40189 918 aaPredicted RBP11.62□□□□□ -0.55
SHKBP1-220ENST00000599716 DPY19L2Q6NUT2 758 aa11.62□□□□□ -0.55
SHKBP1-220ENST00000599716 PRPF40BQ6NWY9 871 aaKnown RBP11.62□□□□□ -0.55
SHKBP1-220ENST00000599716 CNKSR2Q8WXI2 1034 aa11.62□□□□□ -0.55
SHKBP1-220ENST00000599716 SETDB2Q96T68 719 aa11.62□□□□□ -0.55
SHKBP1-220ENST00000599716 RSPH6AQ9H0K4 717 aa11.62□□□□□ -0.55
SHKBP1-220ENST00000599716 RNF216Q9NWF9 866 aaPredicted RBP11.62□□□□□ -0.55
SHKBP1-220ENST00000599716 WDR33Q9C0J8 1336 aaKnown RBP11.61□□□□□ -0.55
SHKBP1-220ENST00000599716 DEFB115Q30KQ5 88 aa11.61□□□□□ -0.55
SHKBP1-220ENST00000599716 SLC51AQ86UW1 340 aa11.61□□□□□ -0.55
SHKBP1-220ENST00000599716 TAOK3Q9H2K8 898 aa11.61□□□□□ -0.55
SHKBP1-220ENST00000599716 MIS18AQ9NYP9 233 aa11.61□□□□□ -0.55
SHKBP1-220ENST00000599716 CEMIPQ8WUJ3 1361 aa11.61□□□□□ -0.55
SHKBP1-220ENST00000599716 SRGNP10124 158 aa11.6□□□□□ -0.55
SHKBP1-220ENST00000599716 NBPF26B4DH59 902 aa11.59□□□□□ -0.55
SHKBP1-220ENST00000599716 U2AF1L5P0DN76 240 aaPredicted RBP11.59□□□□□ -0.55
SHKBP1-220ENST00000599716 ST5P78524 1137 aa11.59□□□□□ -0.55
SHKBP1-220ENST00000599716 U2AF1Q01081 240 aaKnown RBP eCLIP11.59□□□□□ -0.55
SHKBP1-220ENST00000599716 NBPF10Q6P3W6 841 aaKnown RBP11.59□□□□□ -0.55
SHKBP1-220ENST00000599716 NPM2Q86SE8 214 aaKnown RBP11.59□□□□□ -0.55
SHKBP1-220ENST00000599716 LDHDQ86WU2 507 aa11.59□□□□□ -0.55
SHKBP1-220ENST00000599716 NBPF15Q8N660 670 aa11.59□□□□□ -0.55
SHKBP1-220ENST00000599716 TEX13AQ9BXU3 409 aaPredicted RBP11.59□□□□□ -0.55
SHKBP1-220ENST00000599716 ZNF277Q9NRM2 450 aaPredicted RBP11.59□□□□□ -0.55
SHKBP1-220ENST00000599716 ARFGEF2Q9Y6D5 1785 aa11.59□□□□□ -0.55
SHKBP1-220ENST00000599716 ZNF541Q9H0D2 1346 aa11.59□□□□□ -0.55
SHKBP1-220ENST00000599716 THSD7BQ9C0I4 1608 aa11.58□□□□□ -0.56
SHKBP1-220ENST00000599716 HLFQ16534 295 aa11.58□□□□□ -0.56
SHKBP1-220ENST00000599716 STYK1Q6J9G0 422 aa11.58□□□□□ -0.56
SHKBP1-220ENST00000599716 NBPF5PQ86XG9 351 aaPredicted RBP11.58□□□□□ -0.56
SHKBP1-220ENST00000599716 NGEFQ8N5V2 710 aa11.58□□□□□ -0.56
SHKBP1-220ENST00000599716 MASTLQ96GX5 879 aa11.58□□□□□ -0.56
SHKBP1-220ENST00000599716 NPC1L1Q9UHC9 1359 aa11.57□□□□□ -0.56
SHKBP1-220ENST00000599716 CA12O43570 354 aa11.57□□□□□ -0.56
SHKBP1-220ENST00000599716 ITGBL1O95965 494 aaPredicted RBP11.57□□□□□ -0.56
SHKBP1-220ENST00000599716 SOX10P56693 466 aa11.57□□□□□ -0.56
SHKBP1-220ENST00000599716 DGKZQ13574 1117 aa11.57□□□□□ -0.56
SHKBP1-220ENST00000599716 HABP4Q5JVS0 413 aaKnown RBP11.57□□□□□ -0.56
SHKBP1-220ENST00000599716 C7orf43Q8WVR3 580 aa11.57□□□□□ -0.56
SHKBP1-220ENST00000599716 CNKSR1Q969H4 720 aa11.57□□□□□ -0.56
SHKBP1-220ENST00000599716 NIP7Q9Y221 180 aaKnown RBP eCLIP11.57□□□□□ -0.56
SHKBP1-220ENST00000599716 PPP2R1AP30153 589 aa11.56□□□□□ -0.56
SHKBP1-220ENST00000599716 EAPPQ56P03 285 aaPredicted RBP11.56□□□□□ -0.56
SHKBP1-220ENST00000599716 LTBP3Q9NS15 1303 aa11.56□□□□□ -0.56
SHKBP1-220ENST00000599716 RANBP2P49792 3224 aaKnown RBP11.56□□□□□ -0.56
SHKBP1-220ENST00000599716 ABCC12Q96J65 1359 aa11.55□□□□□ -0.56
SHKBP1-220ENST00000599716 COL6A3P12111 3177 aa11.55□□□□□ -0.56
SHKBP1-220ENST00000599716 IQCA1LA6NCM1 817 aa11.55□□□□□ -0.56
SHKBP1-220ENST00000599716 DLL1O00548 723 aa11.55□□□□□ -0.56
SHKBP1-220ENST00000599716 SNRPA1P09661 255 aaKnown RBP11.55□□□□□ -0.56
SHKBP1-220ENST00000599716 NUTM1Q86Y26 1132 aa11.55□□□□□ -0.56
SHKBP1-220ENST00000599716 RTF1Q92541 710 aaKnown RBP11.55□□□□□ -0.56
SHKBP1-220ENST00000599716 CFAP53Q96M91 514 aa11.55□□□□□ -0.56
SHKBP1-220ENST00000599716 THUMPD2Q9BTF0 503 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms