RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 STYK1Q6J9G0 422 aa28.27■■■□□ 2.12
PNKP-212ENST00000599454 SNRPA1P09661 255 aaKnown RBP28.26■■■□□ 2.11
PNKP-212ENST00000599454 U2AF1L5P0DN76 240 aaPredicted RBP28.26■■■□□ 2.11
PNKP-212ENST00000599454 U2AF1Q01081 240 aaKnown RBP eCLIP28.26■■■□□ 2.119e-9■■■■■ 30
PNKP-212ENST00000599454 CLEC4GQ6UXB4 293 aa28.26■■■□□ 2.11
PNKP-212ENST00000599454 USP16Q9Y5T5 823 aa28.26■■■□□ 2.11
PNKP-212ENST00000599454 SOGA3Q5TF21 947 aa28.25■■■□□ 2.11
PNKP-212ENST00000599454 CCDC24Q8N4L8 307 aa28.25■■■□□ 2.11
PNKP-212ENST00000599454 ZNF652Q9Y2D9 606 aa28.25■■■□□ 2.11
PNKP-212ENST00000599454 HTATSF1O43719 755 aaKnown RBP28.24■■■□□ 2.11
PNKP-212ENST00000599454 PPP2R1AP30153 589 aa28.24■■■□□ 2.11
PNKP-212ENST00000599454 ERFEQ4G0M1 354 aa28.24■■■□□ 2.11
PNKP-212ENST00000599454 RGL2O15211 777 aa28.23■■■□□ 2.11
PNKP-212ENST00000599454 SRGNP10124 158 aa28.23■■■□□ 2.11
PNKP-212ENST00000599454 MASTLQ96GX5 879 aa28.23■■■□□ 2.11
PNKP-212ENST00000599454 TAOK3Q9H2K8 898 aa28.23■■■□□ 2.11
PNKP-212ENST00000599454 LAMB4A4D0S4 1761 aa28.22■■■□□ 2.11
PNKP-212ENST00000599454 MCM10Q7L590 875 aa28.22■■■□□ 2.11
PNKP-212ENST00000599454 ZNF219Q9P2Y4 722 aaPredicted RBP28.22■■■□□ 2.11
PNKP-212ENST00000599454 DLG5Q8TDM6 1919 aa28.22■■■□□ 2.11
PNKP-212ENST00000599454 PRPF40BQ6NWY9 871 aaKnown RBP28.2■■■□□ 2.1
PNKP-212ENST00000599454 NBPF5PQ86XG9 351 aaPredicted RBP28.2■■■□□ 2.1
PNKP-212ENST00000599454 POTECB2RU33 542 aa28.19■■■□□ 2.1
PNKP-212ENST00000599454 PRAMEF22A3QJZ6 481 aa28.18■■■□□ 2.1
PNKP-212ENST00000599454 PIP4K2AP48426 406 aaPredicted RBP28.18■■■□□ 2.1
PNKP-212ENST00000599454 SCN4AP35499 1836 aa28.16■■■□□ 2.1
PNKP-212ENST00000599454 KDM3BQ7LBC6 1761 aa28.15■■■□□ 2.1
PNKP-212ENST00000599454 TAF7Q15545 349 aaPredicted RBP28.15■■■□□ 2.1
PNKP-212ENST00000599454 TPTE2Q6XPS3 522 aa28.15■■■□□ 2.1
PNKP-212ENST00000599454 NUP98P52948 1817 aa28.14■■■□□ 2.1
PNKP-212ENST00000599454 NBPF26B4DH59 902 aa28.14■■■□□ 2.1
PNKP-212ENST00000599454 NPR1P16066 1061 aa28.14■■■□□ 2.1
PNKP-212ENST00000599454 DCTN1Q14203 1278 aa28.14■■■□□ 2.1
PNKP-212ENST00000599454 NBPF10Q6P3W6 841 aaKnown RBP28.14■■■□□ 2.1
PNKP-212ENST00000599454 NBPF15Q8N660 670 aa28.14■■■□□ 2.1
PNKP-212ENST00000599454 KLRG2A4D1S0 409 aaPredicted RBP28.13■■■□□ 2.09
PNKP-212ENST00000599454 NEFMP07197 916 aa28.13■■■□□ 2.09
PNKP-212ENST00000599454 NIP7Q9Y221 180 aaKnown RBP eCLIP28.13■■■□□ 2.09
PNKP-212ENST00000599454 CCDC93Q567U6 631 aa28.12■■■□□ 2.09
PNKP-212ENST00000599454 C7orf43Q8WVR3 580 aa28.12■■■□□ 2.09
PNKP-212ENST00000599454 PNISRQ8TF01 805 aaKnown RBP28.1■■■□□ 2.09
PNKP-212ENST00000599454 DDNO94850 711 aaPredicted RBP28.09■■■□□ 2.09
PNKP-212ENST00000599454 CHADLQ6NUI6 762 aa28.09■■■□□ 2.09
PNKP-212ENST00000599454 IQCA1LA6NCM1 817 aa28.08■■■□□ 2.09
PNKP-212ENST00000599454 FKBP4Q02790 459 aaKnown RBP eCLIP28.07■■■□□ 2.08
PNKP-212ENST00000599454 COL13A1Q5TAT6 717 aaPredicted RBP28.06■■■□□ 2.08
PNKP-212ENST00000599454 RTKN2Q8IZC4 609 aa28.06■■■□□ 2.08
PNKP-212ENST00000599454 L3MBTL3Q96JM7 780 aaPredicted RBP28.06■■■□□ 2.08
PNKP-212ENST00000599454 ALDH1B1P30837 517 aa28.05■■■□□ 2.08
PNKP-212ENST00000599454 ERVV-1B6SEH8 477 aa28.04■■■□□ 2.08
PNKP-212ENST00000599454 GTF2E1P29083 439 aaPredicted RBP28.04■■■□□ 2.08
PNKP-212ENST00000599454 HLFQ16534 295 aa28.04■■■□□ 2.08
PNKP-212ENST00000599454 NYXQ9GZU5 481 aa28.04■■■□□ 2.08
PNKP-212ENST00000599454 CREBZFQ9NS37 354 aa28.04■■■□□ 2.08
PNKP-212ENST00000599454 MIS18AQ9NYP9 233 aa28.04■■■□□ 2.08
PNKP-212ENST00000599454 FAM177BA6PVY3 158 aa28.02■■■□□ 2.08
PNKP-212ENST00000599454 LDHDQ86WU2 507 aa28.01■■■□□ 2.07
PNKP-212ENST00000599454 PNNQ9H307 717 aaKnown RBP28.01■■■□□ 2.07
PNKP-212ENST00000599454 MAP3K15Q6ZN16 1313 aa28■■■□□ 2.07
PNKP-212ENST00000599454 HSPA1AP0DMV8 641 aaKnown RBP28■■■□□ 2.07
PNKP-212ENST00000599454 HSPA1BP0DMV9 641 aaKnown RBP28■■■□□ 2.07
PNKP-212ENST00000599454 PLEKHF1Q96S99 279 aa28■■■□□ 2.07
PNKP-212ENST00000599454 TAF1DQ9H5J8 278 aaPredicted RBP28■■■□□ 2.07
PNKP-212ENST00000599454 ZNF277Q9NRM2 450 aaPredicted RBP28■■■□□ 2.07
PNKP-212ENST00000599454 IBTKQ9P2D0 1353 aaPredicted RBP27.99■■■□□ 2.07
PNKP-212ENST00000599454 PCNTO95613 3336 aa27.99■■■□□ 2.07
PNKP-212ENST00000599454 POTEIP0CG38 1075 aa27.99■■■□□ 2.07
PNKP-212ENST00000599454 POTEJP0CG39 1038 aa27.99■■■□□ 2.07
PNKP-212ENST00000599454 EIF4A1P60842 406 aaKnown RBP27.99■■■□□ 2.07
PNKP-212ENST00000599454 NFE2L2Q16236 605 aa27.99■■■□□ 2.07
PNKP-212ENST00000599454 CRY2Q49AN0 593 aa27.99■■■□□ 2.07
PNKP-212ENST00000599454 KIF6Q6ZMV9 814 aa27.99■■■□□ 2.07
PNKP-212ENST00000599454 RIC1Q4ADV7 1423 aa27.99■■■□□ 2.07
PNKP-212ENST00000599454 IARSP41252 1262 aaKnown RBP27.97■■■□□ 2.07
PNKP-212ENST00000599454 CC2D2BQ6DHV5 1058 aa27.97■■■□□ 2.07
PNKP-212ENST00000599454 ZNF541Q9H0D2 1346 aa27.96■■■□□ 2.07
PNKP-212ENST00000599454 TNS4Q8IZW8 715 aa27.96■■■□□ 2.07
PNKP-212ENST00000599454 SYNE4Q8N205 404 aa27.96■■■□□ 2.07
PNKP-212ENST00000599454 NGEFQ8N5V2 710 aa27.96■■■□□ 2.07
PNKP-212ENST00000599454 PSMD1Q99460 953 aa27.96■■■□□ 2.07
PNKP-212ENST00000599454 RRP7AQ9Y3A4 280 aaKnown RBP27.96■■■□□ 2.07
PNKP-212ENST00000599454 ABCC12Q96J65 1359 aa27.96■■■□□ 2.07
PNKP-212ENST00000599454 ADAMTSL1Q8N6G6 1762 aa27.96■■■□□ 2.07
PNKP-212ENST00000599454 ERBB4Q15303 1308 aa27.95■■■□□ 2.07
PNKP-212ENST00000599454 PASKQ96RG2 1323 aa27.95■■■□□ 2.07
PNKP-212ENST00000599454 MAPK8IP3Q9UPT6 1336 aa27.95■■■□□ 2.07
PNKP-212ENST00000599454 SNED1Q8TER0 1413 aa27.95■■■□□ 2.07
PNKP-212ENST00000599454 OLFM4Q6UX06 510 aa27.95■■■□□ 2.06
PNKP-212ENST00000599454 HACL1Q9UJ83 578 aa27.95■■■□□ 2.06
PNKP-212ENST00000599454 FZD9O00144 591 aa27.94■■■□□ 2.06
PNKP-212ENST00000599454 GRIPAP1Q4V328 841 aa27.94■■■□□ 2.06
PNKP-212ENST00000599454 HOXA10P31260 410 aaPredicted RBP27.93■■■□□ 2.06
PNKP-212ENST00000599454 TTLL7Q6ZT98 887 aa27.93■■■□□ 2.06
PNKP-212ENST00000599454 NUTM1Q86Y26 1132 aa27.93■■■□□ 2.06
PNKP-212ENST00000599454 RPGRQ92834 1020 aaKnown RBP27.92■■■□□ 2.06
PNKP-212ENST00000599454 MKRN1Q9UHC7 482 aaKnown RBP27.92■■■□□ 2.06
PNKP-212ENST00000599454 MYL6BP14649 208 aa27.91■■■□□ 2.06
PNKP-212ENST00000599454 EPHX2P34913 555 aa27.91■■■□□ 2.06
PNKP-212ENST00000599454 PNMA8AQ86V59 439 aaPredicted RBP27.91■■■□□ 2.06
PNKP-212ENST00000599454 GPC2Q8N158 579 aa27.91■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms