RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 PRAMEF22A3QJZ6 481 aa22.13■■□□□ 1.13
SHKBP1-215ENST00000597649 C7orf43Q8WVR3 580 aa22.13■■□□□ 1.13
SHKBP1-215ENST00000597649 CNKSR1Q969H4 720 aa22.13■■□□□ 1.13
SHKBP1-215ENST00000597649 FER1L6Q2WGJ9 1857 aa22.13■■□□□ 1.13
SHKBP1-215ENST00000597649 BTBD11A6QL63 1104 aa22.12■■□□□ 1.13
SHKBP1-215ENST00000597649 CHADLQ6NUI6 762 aa22.12■■□□□ 1.13
SHKBP1-215ENST00000597649 DZIP3Q86Y13 1208 aaKnown RBP22.12■■□□□ 1.13
SHKBP1-215ENST00000597649 SLX4Q8IY92 1834 aa22.12■■□□□ 1.13
SHKBP1-215ENST00000597649 SCN7AQ01118 1682 aa22.11■■□□□ 1.13
SHKBP1-215ENST00000597649 MASTLQ96GX5 879 aa22.11■■□□□ 1.13
SHKBP1-215ENST00000597649 SIPA1L3O60292 1781 aaPredicted RBP22.11■■□□□ 1.13
SHKBP1-215ENST00000597649 NPC1L1Q9UHC9 1359 aa22.1■■□□□ 1.13
SHKBP1-215ENST00000597649 PRKAR2BP31323 418 aa22.09■■□□□ 1.13
SHKBP1-215ENST00000597649 ST5P78524 1137 aa22.09■■□□□ 1.13
SHKBP1-215ENST00000597649 RSPH6AQ9H0K4 717 aa22.09■■□□□ 1.13
SHKBP1-215ENST00000597649 CREBZFQ9NS37 354 aa22.09■■□□□ 1.13
SHKBP1-215ENST00000597649 MKRN1Q9UHC7 482 aaKnown RBP22.09■■□□□ 1.13
SHKBP1-215ENST00000597649 DICER1Q9UPY3 1922 aaKnown RBP22.09■■□□□ 1.13
SHKBP1-215ENST00000597649 NPHP1O15259 732 aa22.08■■□□□ 1.13
SHKBP1-215ENST00000597649 NPM2Q86SE8 214 aaKnown RBP22.08■■□□□ 1.13
SHKBP1-215ENST00000597649 CLEC4GQ6UXB4 293 aa22.07■■□□□ 1.12
SHKBP1-215ENST00000597649 KLRG2A4D1S0 409 aaPredicted RBP22.06■■□□□ 1.12
SHKBP1-215ENST00000597649 SOGA3Q5TF21 947 aa22.06■■□□□ 1.12
SHKBP1-215ENST00000597649 OLFM4Q6UX06 510 aa22.06■■□□□ 1.12
SHKBP1-215ENST00000597649 NBPF5PQ86XG9 351 aaPredicted RBP22.06■■□□□ 1.12
SHKBP1-215ENST00000597649 NBPF26B4DH59 902 aa22.05■■□□□ 1.12
SHKBP1-215ENST00000597649 NBPF10Q6P3W6 841 aaKnown RBP22.05■■□□□ 1.12
SHKBP1-215ENST00000597649 MCM10Q7L590 875 aa22.05■■□□□ 1.12
SHKBP1-215ENST00000597649 NBPF15Q8N660 670 aa22.05■■□□□ 1.12
SHKBP1-215ENST00000597649 TAF1DQ9H5J8 278 aaPredicted RBP22.05■■□□□ 1.12
SHKBP1-215ENST00000597649 PASKQ96RG2 1323 aa22.05■■□□□ 1.12
SHKBP1-215ENST00000597649 NPR1P16066 1061 aa22.04■■□□□ 1.12
SHKBP1-215ENST00000597649 L3MBTL3Q96JM7 780 aaPredicted RBP22.04■■□□□ 1.12
SHKBP1-215ENST00000597649 SNRPA1P09661 255 aaKnown RBP22.03■■□□□ 1.12
SHKBP1-215ENST00000597649 ZNF277Q9NRM2 450 aaPredicted RBP22.03■■□□□ 1.12
SHKBP1-215ENST00000597649 DCTN1Q14203 1278 aa22.02■■□□□ 1.12
SHKBP1-215ENST00000597649 CCDC93Q567U6 631 aa22.02■■□□□ 1.12
SHKBP1-215ENST00000597649 LDHDQ86WU2 507 aa22.02■■□□□ 1.12
SHKBP1-215ENST00000597649 ZNF541Q9H0D2 1346 aa22.02■■□□□ 1.12
SHKBP1-215ENST00000597649 IQCA1LA6NCM1 817 aa22.01■■□□□ 1.11
SHKBP1-215ENST00000597649 ITGBL1O95965 494 aaPredicted RBP22.01■■□□□ 1.11
SHKBP1-215ENST00000597649 FKBP4Q02790 459 aaKnown RBP eCLIP22.01■■□□□ 1.11
SHKBP1-215ENST00000597649 HLFQ16534 295 aa22.01■■□□□ 1.11
SHKBP1-215ENST00000597649 NIP7Q9Y221 180 aaKnown RBP eCLIP22.01■■□□□ 1.11
SHKBP1-215ENST00000597649 BCORQ6W2J9 1755 aa22.01■■□□□ 1.11
SHKBP1-215ENST00000597649 CNTNAP1P78357 1384 aa22■■□□□ 1.11
SHKBP1-215ENST00000597649 FAM177BA6PVY3 158 aa22■■□□□ 1.11
SHKBP1-215ENST00000597649 FOXN1O15353 648 aa22■■□□□ 1.11
SHKBP1-215ENST00000597649 TPTE2Q6XPS3 522 aa22■■□□□ 1.11
SHKBP1-215ENST00000597649 ZNF652Q9Y2D9 606 aa22■■□□□ 1.11
SHKBP1-215ENST00000597649 CACNA1SQ13698 1873 aa21.99■■□□□ 1.11
SHKBP1-215ENST00000597649 U2AF1L5P0DN76 240 aaPredicted RBP21.98■■□□□ 1.11
SHKBP1-215ENST00000597649 VEGFBP49765 207 aa21.98■■□□□ 1.11
SHKBP1-215ENST00000597649 U2AF1Q01081 240 aaKnown RBP eCLIP21.98■■□□□ 1.11
SHKBP1-215ENST00000597649 RTF1Q92541 710 aaKnown RBP21.98■■□□□ 1.11
SHKBP1-215ENST00000597649 ARFGEF2Q9Y6D5 1785 aa21.97■■□□□ 1.11
SHKBP1-215ENST00000597649 EAPPQ56P03 285 aaPredicted RBP21.97■■□□□ 1.11
SHKBP1-215ENST00000597649 CFAP53Q96M91 514 aa21.97■■□□□ 1.11
SHKBP1-215ENST00000597649 MIS18AQ9NYP9 233 aa21.97■■□□□ 1.11
SHKBP1-215ENST00000597649 RGL2O15211 777 aa21.96■■□□□ 1.11
SHKBP1-215ENST00000597649 RTKN2Q8IZC4 609 aa21.96■■□□□ 1.11
SHKBP1-215ENST00000597649 SYNE4Q8N205 404 aa21.96■■□□□ 1.11
SHKBP1-215ENST00000597649 HACL1Q9UJ83 578 aa21.96■■□□□ 1.11
SHKBP1-215ENST00000597649 NUDCQ9Y266 331 aa21.96■■□□□ 1.11
SHKBP1-215ENST00000597649 TMEM88BA6NKF7 163 aa21.95■■□□□ 1.1
SHKBP1-215ENST00000597649 FZD9O00144 591 aa21.95■■□□□ 1.1
SHKBP1-215ENST00000597649 PPP2R1AP30153 589 aa21.95■■□□□ 1.1
SHKBP1-215ENST00000597649 EPHX2P34913 555 aa21.95■■□□□ 1.1
SHKBP1-215ENST00000597649 TAF7Q15545 349 aaPredicted RBP21.94■■□□□ 1.1
SHKBP1-215ENST00000597649 CLEC11AQ9Y240 323 aa21.94■■□□□ 1.1
SHKBP1-215ENST00000597649 HTATSF1O43719 755 aaKnown RBP21.93■■□□□ 1.1
SHKBP1-215ENST00000597649 ALDH1B1P30837 517 aa21.93■■□□□ 1.1
SHKBP1-215ENST00000597649 SCN4AP35499 1836 aa21.93■■□□□ 1.1
SHKBP1-215ENST00000597649 IARSP41252 1262 aaKnown RBP21.93■■□□□ 1.1
SHKBP1-215ENST00000597649 RNF123Q5XPI4 1314 aa21.93■■□□□ 1.1
SHKBP1-215ENST00000597649 SNED1Q8TER0 1413 aa21.92■■□□□ 1.1
SHKBP1-215ENST00000597649 CRY2Q49AN0 593 aa21.92■■□□□ 1.1
SHKBP1-215ENST00000597649 MAP1SQ66K74 1059 aaPredicted RBP21.92■■□□□ 1.1
SHKBP1-215ENST00000597649 NUTM1Q86Y26 1132 aa21.92■■□□□ 1.1
SHKBP1-215ENST00000597649 NGEFQ8N5V2 710 aa21.92■■□□□ 1.1
SHKBP1-215ENST00000597649 PRDM10Q9NQV6 1147 aa21.92■■□□□ 1.1
SHKBP1-215ENST00000597649 SLC51AQ86UW1 340 aa21.91■■□□□ 1.1
SHKBP1-215ENST00000597649 CNTROBQ8N137 903 aa21.91■■□□□ 1.1
SHKBP1-215ENST00000597649 WBP1LQ9NX94 342 aa21.91■■□□□ 1.1
SHKBP1-215ENST00000597649 ABCC12Q96J65 1359 aa21.9■■□□□ 1.1
SHKBP1-215ENST00000597649 GTF2E1P29083 439 aaPredicted RBP21.9■■□□□ 1.1
SHKBP1-215ENST00000597649 PSMD1Q99460 953 aa21.9■■□□□ 1.1
SHKBP1-215ENST00000597649 CTCFP49711 727 aaPredicted RBP21.89■■□□□ 1.09
SHKBP1-215ENST00000597649 PNMA8AQ86V59 439 aaPredicted RBP21.89■■□□□ 1.09
SHKBP1-215ENST00000597649 GPC2Q8N158 579 aa21.89■■□□□ 1.09
SHKBP1-215ENST00000597649 TTLL7Q6ZT98 887 aa21.88■■□□□ 1.09
SHKBP1-215ENST00000597649 ADAMTSL1Q8N6G6 1762 aa21.88■■□□□ 1.09
SHKBP1-215ENST00000597649 COL4A5P29400 1685 aa21.88■■□□□ 1.09
SHKBP1-215ENST00000597649 RASSF10A6NK89 507 aa21.87■■□□□ 1.09
SHKBP1-215ENST00000597649 ERVV-1B6SEH8 477 aa21.87■■□□□ 1.09
SHKBP1-215ENST00000597649 HOXA10P31260 410 aaPredicted RBP21.86■■□□□ 1.09
SHKBP1-215ENST00000597649 LBX1P52954 281 aa21.86■■□□□ 1.09
SHKBP1-215ENST00000597649 FMR1Q06787 632 aaKnown RBP eCLIP21.86■■□□□ 1.09
SHKBP1-215ENST00000597649 DEFB115Q30KQ5 88 aa21.86■■□□□ 1.09
SHKBP1-215ENST00000597649 AIDAQ96BJ3 306 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms