RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CAMTA2O94983 1202 aa13.73□□□□□ -0.21
TRIM28-210ENST00000597618 ITGBL1O95965 494 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-210ENST00000597618 LBX1P52954 281 aa13.73□□□□□ -0.21
TRIM28-210ENST00000597618 EAPPQ56P03 285 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-210ENST00000597618 ZNF790Q6PG37 636 aa13.73□□□□□ -0.21
TRIM28-210ENST00000597618 HACL1Q9UJ83 578 aa13.73□□□□□ -0.21
TRIM28-210ENST00000597618 SLX4Q8IY92 1834 aa13.72□□□□□ -0.21
TRIM28-210ENST00000597618 RASSF10A6NK89 507 aa13.72□□□□□ -0.21
TRIM28-210ENST00000597618 HSPA5P11021 654 aaKnown RBP13.72□□□□□ -0.21
TRIM28-210ENST00000597618 TEFQ10587 303 aa13.72□□□□□ -0.21
TRIM28-210ENST00000597618 ARFGEF2Q9Y6D5 1785 aa13.72□□□□□ -0.21
TRIM28-210ENST00000597618 VIRMAQ69YN4 1812 aaKnown RBP13.71□□□□□ -0.21
TRIM28-210ENST00000597618 ZNF541Q9H0D2 1346 aa13.71□□□□□ -0.21
TRIM28-210ENST00000597618 MAP2K1Q02750 393 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-210ENST00000597618 FKBP4Q02790 459 aaKnown RBP eCLIP13.71□□□□□ -0.21
TRIM28-210ENST00000597618 PNMA8AQ86V59 439 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-210ENST00000597618 C7orf43Q8WVR3 580 aa13.71□□□□□ -0.21
TRIM28-210ENST00000597618 ABHD8Q96I13 439 aa13.71□□□□□ -0.21
TRIM28-210ENST00000597618 FMNL2Q96PY5 1086 aa13.71□□□□□ -0.21
TRIM28-210ENST00000597618 CLEC11AQ9Y240 323 aa13.71□□□□□ -0.21
TRIM28-210ENST00000597618 DIAPH1O60610 1272 aaKnown RBP13.7□□□□□ -0.22
TRIM28-210ENST00000597618 HSPA8P11142 646 aaKnown RBP13.7□□□□□ -0.22
TRIM28-210ENST00000597618 NPR1P16066 1061 aa13.7□□□□□ -0.22
TRIM28-210ENST00000597618 EPHX2P34913 555 aa13.7□□□□□ -0.22
TRIM28-210ENST00000597618 AMER1Q5JTC6 1135 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-210ENST00000597618 NBPF5PQ86XG9 351 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-210ENST00000597618 DZIP3Q86Y13 1208 aaKnown RBP13.7□□□□□ -0.22
TRIM28-210ENST00000597618 ZNF277Q9NRM2 450 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-210ENST00000597618 ADAMTSL1Q8N6G6 1762 aa13.69□□□□□ -0.22
TRIM28-210ENST00000597618 GNAT3A8MTJ3 354 aa13.69□□□□□ -0.22
TRIM28-210ENST00000597618 A1BGP04217 495 aa13.69□□□□□ -0.22
TRIM28-210ENST00000597618 DEFB115Q30KQ5 88 aa13.69□□□□□ -0.22
TRIM28-210ENST00000597618 FAM161AQ3B820 660 aa13.69□□□□□ -0.22
TRIM28-210ENST00000597618 RTKN2Q8IZC4 609 aa13.69□□□□□ -0.22
TRIM28-210ENST00000597618 CNTROBQ8N137 903 aa13.69□□□□□ -0.22
TRIM28-210ENST00000597618 GAS2L2Q8NHY3 880 aa13.69□□□□□ -0.22
TRIM28-210ENST00000597618 ZNF652Q9Y2D9 606 aa13.69□□□□□ -0.22
TRIM28-210ENST00000597618 BCORQ6W2J9 1755 aa13.68□□□□□ -0.22
TRIM28-210ENST00000597618 CLEC4GQ6UXB4 293 aa13.68□□□□□ -0.22
TRIM28-210ENST00000597618 ABT1Q9ULW3 272 aaKnown RBP13.68□□□□□ -0.22
TRIM28-210ENST00000597618 CACNA1SQ13698 1873 aa13.67□□□□□ -0.22
TRIM28-210ENST00000597618 RNF123Q5XPI4 1314 aa13.67□□□□□ -0.22
TRIM28-210ENST00000597618 WDR33Q9C0J8 1336 aaKnown RBP13.67□□□□□ -0.22
TRIM28-210ENST00000597618 CLSPNQ9HAW4 1339 aa13.67□□□□□ -0.22
TRIM28-210ENST00000597618 KLRG2A4D1S0 409 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-210ENST00000597618 MAP1SQ66K74 1059 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-210ENST00000597618 GPC2Q8N158 579 aa13.67□□□□□ -0.22
TRIM28-210ENST00000597618 IL17REQ8NFR9 667 aa13.67□□□□□ -0.22
TRIM28-210ENST00000597618 FZD9O00144 591 aa13.66□□□□□ -0.22
TRIM28-210ENST00000597618 IARSP41252 1262 aaKnown RBP13.66□□□□□ -0.22
TRIM28-210ENST00000597618 CEMIPQ8WUJ3 1361 aa13.66□□□□□ -0.22
TRIM28-210ENST00000597618 RGL2O15211 777 aa13.65□□□□□ -0.22
TRIM28-210ENST00000597618 TPTE2Q6XPS3 522 aa13.65□□□□□ -0.22
TRIM28-210ENST00000597618 BEGAINQ9BUH8 593 aa13.65□□□□□ -0.22
TRIM28-210ENST00000597618 DDX21Q9NR30 783 aaKnown RBP eCLIP13.65□□□□□ -0.22
TRIM28-210ENST00000597618 SIPA1L3O60292 1781 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-210ENST00000597618 THSD7BQ9C0I4 1608 aa13.64□□□□□ -0.23
TRIM28-210ENST00000597618 BTBD11A6QL63 1104 aa13.64□□□□□ -0.23
TRIM28-210ENST00000597618 ALDH1B1P30837 517 aa13.64□□□□□ -0.23
TRIM28-210ENST00000597618 ECE1P42892 770 aa13.64□□□□□ -0.23
TRIM28-210ENST00000597618 MLLT1Q03111 559 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-210ENST00000597618 OLFM4Q6UX06 510 aa13.64□□□□□ -0.23
TRIM28-210ENST00000597618 SYNE4Q8N205 404 aa13.64□□□□□ -0.23
TRIM28-210ENST00000597618 JDP2Q8WYK2 163 aa13.64□□□□□ -0.23
TRIM28-210ENST00000597618 COL3A1P02461 1466 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-210ENST00000597618 U2SURPO15042 1029 aaKnown RBP13.63□□□□□ -0.23
TRIM28-210ENST00000597618 LMOD1P29536 600 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-210ENST00000597618 PAXIP1Q6ZW49 1069 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-210ENST00000597618 CAPNS2Q96L46 248 aa13.63□□□□□ -0.23
TRIM28-210ENST00000597618 PSMD1Q99460 953 aa13.63□□□□□ -0.23
TRIM28-210ENST00000597618 NIP7Q9Y221 180 aaKnown RBP eCLIP13.63□□□□□ -0.23
TRIM28-210ENST00000597618 CCDC85CA6NKD9 419 aa13.62□□□□□ -0.23
TRIM28-210ENST00000597618 KCNQ3O43525 872 aa13.62□□□□□ -0.23
TRIM28-210ENST00000597618 PIP4K2AP48426 406 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-210ENST00000597618 EIF6P56537 245 aaKnown RBP13.62□□□□□ -0.23
TRIM28-210ENST00000597618 TRIM26Q12899 539 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-210ENST00000597618 USP16Q9Y5T5 823 aa13.62□□□□□ -0.23
TRIM28-210ENST00000597618 SNRPA1P09661 255 aaKnown RBP13.61□□□□□ -0.23
TRIM28-210ENST00000597618 RGS19P49795 217 aa13.61□□□□□ -0.23
TRIM28-210ENST00000597618 CC2D2BQ6DHV5 1058 aa13.61□□□□□ -0.23
TRIM28-210ENST00000597618 GPR101Q96P66 508 aaPredicted RBP13.61□□□□□ -0.23
TRIM28-210ENST00000597618 GJA3Q9Y6H8 435 aa13.61□□□□□ -0.23
TRIM28-210ENST00000597618 SNED1Q8TER0 1413 aa13.61□□□□□ -0.23
TRIM28-210ENST00000597618 GTF2E1P29083 439 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-210ENST00000597618 CC2D1BQ5T0F9 858 aaKnown RBP13.6□□□□□ -0.23
TRIM28-210ENST00000597618 PCDH10Q9P2E7 1040 aa13.6□□□□□ -0.23
TRIM28-210ENST00000597618 PRAMEF22A3QJZ6 481 aa13.59□□□□□ -0.23
TRIM28-210ENST00000597618 FAM177BA6PVY3 158 aa13.59□□□□□ -0.23
TRIM28-210ENST00000597618 SCNN1DP51172 638 aa13.59□□□□□ -0.23
TRIM28-210ENST00000597618 GRM1Q13255 1194 aa13.59□□□□□ -0.23
TRIM28-210ENST00000597618 CRY2Q49AN0 593 aa13.59□□□□□ -0.23
TRIM28-210ENST00000597618 GRIPAP1Q4V328 841 aa13.59□□□□□ -0.23
TRIM28-210ENST00000597618 CYP4F22Q6NT55 531 aa13.59□□□□□ -0.23
TRIM28-210ENST00000597618 USP50Q70EL3 339 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-210ENST00000597618 CA12O43570 354 aa13.58□□□□□ -0.24
TRIM28-210ENST00000597618 MAP2K2P36507 400 aa13.58□□□□□ -0.24
TRIM28-210ENST00000597618 NYXQ9GZU5 481 aa13.58□□□□□ -0.24
TRIM28-210ENST00000597618 TLL2Q9Y6L7 1015 aa13.58□□□□□ -0.24
TRIM28-210ENST00000597618 KIF7Q2M1P5 1343 aa13.58□□□□□ -0.24
TRIM28-210ENST00000597618 COL4A5P29400 1685 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms