RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 DDNO94850 711 aaPredicted RBP13.39□□□□□ -0.27
LIG1-209ENST00000596104 PIP4K2AP48426 406 aaPredicted RBP13.39□□□□□ -0.27
LIG1-209ENST00000596104 ST5P78524 1137 aa13.39□□□□□ -0.27
LIG1-209ENST00000596104 TNS4Q8IZW8 715 aa13.39□□□□□ -0.27
LIG1-209ENST00000596104 C7orf43Q8WVR3 580 aa13.39□□□□□ -0.27
LIG1-209ENST00000596104 MASTLQ96GX5 879 aa13.39□□□□□ -0.27
LIG1-209ENST00000596104 POTEIP0CG38 1075 aa13.38□□□□□ -0.27
LIG1-209ENST00000596104 POTEJP0CG39 1038 aa13.38□□□□□ -0.27
LIG1-209ENST00000596104 SOGA3Q5TF21 947 aa13.38□□□□□ -0.27
LIG1-209ENST00000596104 CHADLQ6NUI6 762 aa13.38□□□□□ -0.27
LIG1-209ENST00000596104 CLEC4GQ6UXB4 293 aa13.38□□□□□ -0.27
LIG1-209ENST00000596104 NPM2Q86SE8 214 aaKnown RBP13.38□□□□□ -0.27
LIG1-209ENST00000596104 KLRG2A4D1S0 409 aaPredicted RBP13.37□□□□□ -0.27
LIG1-209ENST00000596104 NPHP1O15259 732 aa13.37□□□□□ -0.27
LIG1-209ENST00000596104 FER1L6Q2WGJ9 1857 aa13.36□□□□□ -0.27
LIG1-209ENST00000596104 NBPF26B4DH59 902 aa13.36□□□□□ -0.27
LIG1-209ENST00000596104 SNRPA1P09661 255 aaKnown RBP13.36□□□□□ -0.27
LIG1-209ENST00000596104 NBPF10Q6P3W6 841 aaKnown RBP13.36□□□□□ -0.27
LIG1-209ENST00000596104 MCM10Q7L590 875 aa13.36□□□□□ -0.27
LIG1-209ENST00000596104 NBPF5PQ86XG9 351 aaPredicted RBP13.36□□□□□ -0.27
LIG1-209ENST00000596104 NBPF15Q8N660 670 aa13.36□□□□□ -0.27
LIG1-209ENST00000596104 L3MBTL3Q96JM7 780 aaPredicted RBP13.36□□□□□ -0.27
LIG1-209ENST00000596104 CFAP53Q96M91 514 aa13.36□□□□□ -0.27
LIG1-209ENST00000596104 CREBZFQ9NS37 354 aa13.36□□□□□ -0.27
LIG1-209ENST00000596104 RGL2O15211 777 aa13.35□□□□□ -0.27
LIG1-209ENST00000596104 CAPN15O75808 1086 aa13.35□□□□□ -0.27
LIG1-209ENST00000596104 NPR1P16066 1061 aa13.35□□□□□ -0.27
LIG1-209ENST00000596104 CCDC93Q567U6 631 aa13.35□□□□□ -0.27
LIG1-209ENST00000596104 ZNF652Q9Y2D9 606 aa13.35□□□□□ -0.27
LIG1-209ENST00000596104 BCORQ6W2J9 1755 aa13.35□□□□□ -0.27
LIG1-209ENST00000596104 PCNTO95613 3336 aa13.34□□□□□ -0.27
LIG1-209ENST00000596104 SLX4Q8IY92 1834 aa13.34□□□□□ -0.27
LIG1-209ENST00000596104 TAF1DQ9H5J8 278 aaPredicted RBP13.34□□□□□ -0.27
LIG1-209ENST00000596104 NUDCQ9Y266 331 aa13.34□□□□□ -0.27
LIG1-209ENST00000596104 PASKQ96RG2 1323 aa13.34□□□□□ -0.27
LIG1-209ENST00000596104 IQCA1LA6NCM1 817 aa13.33□□□□□ -0.28
LIG1-209ENST00000596104 U2AF1L5P0DN76 240 aaPredicted RBP13.33□□□□□ -0.28
LIG1-209ENST00000596104 U2AF1Q01081 240 aaKnown RBP eCLIP13.33□□□□□ -0.28
LIG1-209ENST00000596104 FKBP4Q02790 459 aaKnown RBP eCLIP13.33□□□□□ -0.28
LIG1-209ENST00000596104 DCTN1Q14203 1278 aa13.33□□□□□ -0.28
LIG1-209ENST00000596104 OLFM4Q6UX06 510 aa13.33□□□□□ -0.28
LIG1-209ENST00000596104 LDHDQ86WU2 507 aa13.33□□□□□ -0.28
LIG1-209ENST00000596104 RTF1Q92541 710 aaKnown RBP13.33□□□□□ -0.28
LIG1-209ENST00000596104 MKRN1Q9UHC7 482 aaKnown RBP13.33□□□□□ -0.28
LIG1-209ENST00000596104 NIP7Q9Y221 180 aaKnown RBP eCLIP13.33□□□□□ -0.28
LIG1-209ENST00000596104 CCDC88AQ3V6T2 1871 aa13.32□□□□□ -0.28
LIG1-209ENST00000596104 HTATSF1O43719 755 aaKnown RBP13.32□□□□□ -0.28
LIG1-209ENST00000596104 PPP2R1AP30153 589 aa13.32□□□□□ -0.28
LIG1-209ENST00000596104 HLFQ16534 295 aa13.32□□□□□ -0.28
LIG1-209ENST00000596104 TPTE2Q6XPS3 522 aa13.32□□□□□ -0.28
LIG1-209ENST00000596104 ZNF277Q9NRM2 450 aaPredicted RBP13.32□□□□□ -0.28
LIG1-209ENST00000596104 ZNF541Q9H0D2 1346 aa13.32□□□□□ -0.28
LIG1-209ENST00000596104 CNTNAP1P78357 1384 aa13.32□□□□□ -0.28
LIG1-209ENST00000596104 DICER1Q9UPY3 1922 aaKnown RBP13.31□□□□□ -0.28
LIG1-209ENST00000596104 SNED1Q8TER0 1413 aa13.3□□□□□ -0.28
LIG1-209ENST00000596104 ARFGEF2Q9Y6D5 1785 aa13.3□□□□□ -0.28
LIG1-209ENST00000596104 ITGBL1O95965 494 aaPredicted RBP13.3□□□□□ -0.28
LIG1-209ENST00000596104 TAF7Q15545 349 aaPredicted RBP13.3□□□□□ -0.28
LIG1-209ENST00000596104 RTKN2Q8IZC4 609 aa13.3□□□□□ -0.28
LIG1-209ENST00000596104 FAM177BA6PVY3 158 aa13.29□□□□□ -0.28
LIG1-209ENST00000596104 FZD9O00144 591 aa13.29□□□□□ -0.28
LIG1-209ENST00000596104 CRY2Q49AN0 593 aa13.29□□□□□ -0.28
LIG1-209ENST00000596104 HACL1Q9UJ83 578 aa13.29□□□□□ -0.28
LIG1-209ENST00000596104 ABCC12Q96J65 1359 aa13.29□□□□□ -0.28
LIG1-209ENST00000596104 FOXN1O15353 648 aa13.28□□□□□ -0.28
LIG1-209ENST00000596104 ALDH1B1P30837 517 aa13.28□□□□□ -0.28
LIG1-209ENST00000596104 EPHX2P34913 555 aa13.28□□□□□ -0.28
LIG1-209ENST00000596104 IARSP41252 1262 aaKnown RBP13.28□□□□□ -0.28
LIG1-209ENST00000596104 SYNE4Q8N205 404 aa13.28□□□□□ -0.28
LIG1-209ENST00000596104 MIS18AQ9NYP9 233 aa13.28□□□□□ -0.28
LIG1-209ENST00000596104 TMEM88BA6NKF7 163 aa13.27□□□□□ -0.29
LIG1-209ENST00000596104 ERVV-1B6SEH8 477 aa13.27□□□□□ -0.29
LIG1-209ENST00000596104 VEGFBP49765 207 aa13.27□□□□□ -0.29
LIG1-209ENST00000596104 EAPPQ56P03 285 aaPredicted RBP13.27□□□□□ -0.29
LIG1-209ENST00000596104 PSMD1Q99460 953 aa13.27□□□□□ -0.29
LIG1-209ENST00000596104 RNF123Q5XPI4 1314 aa13.27□□□□□ -0.29
LIG1-209ENST00000596104 GTF2E1P29083 439 aaPredicted RBP13.26□□□□□ -0.29
LIG1-209ENST00000596104 MAP3K15Q6ZN16 1313 aa13.26□□□□□ -0.29
LIG1-209ENST00000596104 NUTM1Q86Y26 1132 aa13.26□□□□□ -0.29
LIG1-209ENST00000596104 SCN4AP35499 1836 aa13.25□□□□□ -0.29
LIG1-209ENST00000596104 ADAMTSL1Q8N6G6 1762 aa13.25□□□□□ -0.29
LIG1-209ENST00000596104 RIC1Q4ADV7 1423 aa13.25□□□□□ -0.29
LIG1-209ENST00000596104 UBN2Q6ZU65 1347 aa13.25□□□□□ -0.29
LIG1-209ENST00000596104 HOXA10P31260 410 aaPredicted RBP13.25□□□□□ -0.29
LIG1-209ENST00000596104 EIF4A1P60842 406 aaKnown RBP13.25□□□□□ -0.29
LIG1-209ENST00000596104 MAP1SQ66K74 1059 aaPredicted RBP13.25□□□□□ -0.29
LIG1-209ENST00000596104 CC2D2BQ6DHV5 1058 aa13.25□□□□□ -0.29
LIG1-209ENST00000596104 TTLL7Q6ZT98 887 aa13.25□□□□□ -0.29
LIG1-209ENST00000596104 PNMA8AQ86V59 439 aaPredicted RBP13.25□□□□□ -0.29
LIG1-209ENST00000596104 GPC2Q8N158 579 aa13.25□□□□□ -0.29
LIG1-209ENST00000596104 NYXQ9GZU5 481 aa13.25□□□□□ -0.29
LIG1-209ENST00000596104 PRDM10Q9NQV6 1147 aa13.25□□□□□ -0.29
LIG1-209ENST00000596104 COL4A5P29400 1685 aa13.24□□□□□ -0.29
LIG1-209ENST00000596104 IBTKQ9P2D0 1353 aaPredicted RBP13.24□□□□□ -0.29
LIG1-209ENST00000596104 RASSF10A6NK89 507 aa13.24□□□□□ -0.29
LIG1-209ENST00000596104 SLC51AQ86UW1 340 aa13.24□□□□□ -0.29
LIG1-209ENST00000596104 CNTROBQ8N137 903 aa13.24□□□□□ -0.29
LIG1-209ENST00000596104 NGEFQ8N5V2 710 aa13.24□□□□□ -0.29
LIG1-209ENST00000596104 PNISRQ8TF01 805 aaKnown RBP13.24□□□□□ -0.29
LIG1-209ENST00000596104 PLEKHF1Q96S99 279 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms