RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 ANKRD13DQ6ZTN6 518 aa18.63■□□□□ 0.57
SHKBP1-211ENST00000595945 CNTNAP4Q9C0A0 1308 aa18.63■□□□□ 0.57
SHKBP1-211ENST00000595945 C4BP0C0L5 1744 aa18.63■□□□□ 0.57
SHKBP1-211ENST00000595945 EIF5P55010 431 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-211ENST00000595945 RC3H1Q5TC82 1133 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-211ENST00000595945 B4GALNT3Q6L9W6 998 aa18.62■□□□□ 0.57
SHKBP1-211ENST00000595945 METTL22Q9BUU2 404 aaPredicted RBP18.62■□□□□ 0.57
SHKBP1-211ENST00000595945 SRCIN1Q9C0H9 1055 aa18.62■□□□□ 0.57
SHKBP1-211ENST00000595945 BCORQ6W2J9 1755 aa18.62■□□□□ 0.57
SHKBP1-211ENST00000595945 EP400Q96L91 3159 aa18.62■□□□□ 0.57
SHKBP1-211ENST00000595945 ALDH1L1O75891 902 aa18.61■□□□□ 0.57
SHKBP1-211ENST00000595945 RIC3Q7Z5B4 369 aa18.61■□□□□ 0.57
SHKBP1-211ENST00000595945 CCDC136Q96JN2 1154 aa18.61■□□□□ 0.57
SHKBP1-211ENST00000595945 CCNL1Q9UK58 526 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-211ENST00000595945 PCDHB15Q9Y5E8 787 aa18.61■□□□□ 0.57
SHKBP1-211ENST00000595945 LINS1Q8NG48 757 aa18.6■□□□□ 0.57
SHKBP1-211ENST00000595945 UBR3Q6ZT12 1888 aa18.6■□□□□ 0.57
SHKBP1-211ENST00000595945 IGKV5-2P06315 115 aa18.59■□□□□ 0.57
SHKBP1-211ENST00000595945 KCNQ4P56696 695 aa18.59■□□□□ 0.57
SHKBP1-211ENST00000595945 MEIS3Q99687 375 aa18.59■□□□□ 0.57
SHKBP1-211ENST00000595945 SLC27A3Q5K4L6 730 aa18.58■□□□□ 0.56
SHKBP1-211ENST00000595945 USP44Q9H0E7 712 aa18.58■□□□□ 0.56
SHKBP1-211ENST00000595945 LRRC4BQ9NT99 713 aa18.58■□□□□ 0.56
SHKBP1-211ENST00000595945 MAP3K15Q6ZN16 1313 aa18.57■□□□□ 0.56
SHKBP1-211ENST00000595945 KDM2BQ8NHM5 1336 aa18.57■□□□□ 0.56
SHKBP1-211ENST00000595945 PLSCR1O15162 318 aa18.57■□□□□ 0.56
SHKBP1-211ENST00000595945 MYD88Q99836 296 aa18.57■□□□□ 0.56
SHKBP1-211ENST00000595945 SCN7AQ01118 1682 aa18.57■□□□□ 0.56
SHKBP1-211ENST00000595945 NEURL1BA8MQ27 555 aa18.56■□□□□ 0.56
SHKBP1-211ENST00000595945 GNAI3P08754 354 aa18.56■□□□□ 0.56
SHKBP1-211ENST00000595945 NEXNQ0ZGT2 675 aa18.56■□□□□ 0.56
SHKBP1-211ENST00000595945 C4AP0C0L4 1744 aa18.56■□□□□ 0.56
SHKBP1-211ENST00000595945 COL15A1P39059 1388 aa18.55■□□□□ 0.56
SHKBP1-211ENST00000595945 UTYO14607 1347 aa18.55■□□□□ 0.56
SHKBP1-211ENST00000595945 ERVV-1B6SEH8 477 aa18.55■□□□□ 0.56
SHKBP1-211ENST00000595945 RPS6KA4O75676 772 aa18.55■□□□□ 0.56
SHKBP1-211ENST00000595945 CWF19L2Q2TBE0 894 aaKnown RBP18.55■□□□□ 0.56
SHKBP1-211ENST00000595945 KIF6Q6ZMV9 814 aa18.55■□□□□ 0.56
SHKBP1-211ENST00000595945 PROM2Q8N271 834 aa18.55■□□□□ 0.56
SHKBP1-211ENST00000595945 ZBTB3Q9H5J0 574 aa18.55■□□□□ 0.56
SHKBP1-211ENST00000595945 DZIP3Q86Y13 1208 aaKnown RBP18.54■□□□□ 0.56
SHKBP1-211ENST00000595945 ISCA1Q9BUE6 129 aa18.54■□□□□ 0.56
SHKBP1-211ENST00000595945 C1orf115Q9H7X2 142 aa18.54■□□□□ 0.56
SHKBP1-211ENST00000595945 ZNF330Q9Y3S2 320 aaPredicted RBP18.54■□□□□ 0.56
SHKBP1-211ENST00000595945 TUBGCP6Q96RT7 1819 aa18.53■□□□□ 0.56
SHKBP1-211ENST00000595945 A0A087WZG4 1122 aa18.53■□□□□ 0.56
SHKBP1-211ENST00000595945 APBA3O96018 575 aa18.53■□□□□ 0.56
SHKBP1-211ENST00000595945 IGHDP01880 384 aa18.53■□□□□ 0.56
SHKBP1-211ENST00000595945 TRIM28Q13263 835 aaKnown RBP18.53■□□□□ 0.56
SHKBP1-211ENST00000595945 TCIRG1Q13488 830 aa18.53■□□□□ 0.56
SHKBP1-211ENST00000595945 HDAC1Q13547 482 aaPredicted RBP18.53■□□□□ 0.56
SHKBP1-211ENST00000595945 GCKRQ14397 625 aa18.53■□□□□ 0.56
SHKBP1-211ENST00000595945 TXNRD1Q16881 649 aa18.53■□□□□ 0.56
SHKBP1-211ENST00000595945 GIGYF2Q6Y7W6 1299 aaKnown RBP18.53■□□□□ 0.56
SHKBP1-211ENST00000595945 CAMTA2O94983 1202 aa18.52■□□□□ 0.56
SHKBP1-211ENST00000595945 GNAI2P04899 355 aa18.52■□□□□ 0.56
SHKBP1-211ENST00000595945 SIRT2Q8IXJ6 389 aa18.52■□□□□ 0.56
SHKBP1-211ENST00000595945 TBC1D2BQ9UPU7 963 aa18.52■□□□□ 0.56
SHKBP1-211ENST00000595945 ATP5J2-PTCD1G3V325 749 aa18.51■□□□□ 0.55
SHKBP1-211ENST00000595945 GRM8O00222 908 aa18.51■□□□□ 0.55
SHKBP1-211ENST00000595945 RGL2O15211 777 aa18.51■□□□□ 0.55
SHKBP1-211ENST00000595945 NBPF7P0C2Y1 421 aaPredicted RBP18.51■□□□□ 0.55
SHKBP1-211ENST00000595945 UBTFL1P0CB47 393 aaPredicted RBP18.51■□□□□ 0.55
SHKBP1-211ENST00000595945 HMGB2P26583 209 aaKnown RBP18.51■□□□□ 0.55
SHKBP1-211ENST00000595945 HLFQ16534 295 aa18.51■□□□□ 0.55
SHKBP1-211ENST00000595945 CEP85Q6P2H3 762 aa18.51■□□□□ 0.55
SHKBP1-211ENST00000595945 CENPQQ7L2Z9 268 aaPredicted RBP18.51■□□□□ 0.55
SHKBP1-211ENST00000595945 ANKRD44Q8N8A2 993 aa18.51■□□□□ 0.55
SHKBP1-211ENST00000595945 RWDD1Q9H446 243 aaPredicted RBP18.51■□□□□ 0.55
SHKBP1-211ENST00000595945 HSP90AB3PQ58FF7 597 aa18.5■□□□□ 0.55
SHKBP1-211ENST00000595945 NPM2Q86SE8 214 aaKnown RBP18.5■□□□□ 0.55
SHKBP1-211ENST00000595945 RPAP2Q8IXW5 612 aaPredicted RBP18.5■□□□□ 0.55
SHKBP1-211ENST00000595945 CCDC191Q8NCU4 936 aa18.5■□□□□ 0.55
SHKBP1-211ENST00000595945 GNPATO15228 680 aa18.49■□□□□ 0.55
SHKBP1-211ENST00000595945 CASP7P55210 303 aa18.49■□□□□ 0.55
SHKBP1-211ENST00000595945 AMIGO3Q86WK7 504 aa18.49■□□□□ 0.55
SHKBP1-211ENST00000595945 C9orf78Q9NZ63 289 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-211ENST00000595945 LRRFIP2Q9Y608 721 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-211ENST00000595945 H7C1W4 665 aa18.48■□□□□ 0.55
SHKBP1-211ENST00000595945 ZNF34Q8IZ26 560 aa18.48■□□□□ 0.55
SHKBP1-211ENST00000595945 CWC25Q9NXE8 425 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-211ENST00000595945 RTCBQ9Y3I0 505 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-211ENST00000595945 MYH3P11055 1940 aa18.48■□□□□ 0.55
SHKBP1-211ENST00000595945 COL24A1Q17RW2 1714 aa18.47■□□□□ 0.55
SHKBP1-211ENST00000595945 ADRA2BP18089 450 aa18.47■□□□□ 0.55
SHKBP1-211ENST00000595945 AK7Q96M32 723 aa18.47■□□□□ 0.55
SHKBP1-211ENST00000595945 NARFQ9UHQ1 456 aa18.47■□□□□ 0.55
SHKBP1-211ENST00000595945 HDAC5Q9UQL6 1122 aa18.47■□□□□ 0.55
SHKBP1-211ENST00000595945 QSER1Q2KHR3 1735 aa18.46■□□□□ 0.55
SHKBP1-211ENST00000595945 ATP8B2P98198 1209 aa18.46■□□□□ 0.55
SHKBP1-211ENST00000595945 SMIM5Q71RC9 77 aa18.46■□□□□ 0.55
SHKBP1-211ENST00000595945 KAZALD1Q96I82 304 aa18.46■□□□□ 0.55
SHKBP1-211ENST00000595945 SUCLG2Q96I99 432 aa18.46■□□□□ 0.55
SHKBP1-211ENST00000595945 ARXQ96QS3 562 aa18.46■□□□□ 0.55
SHKBP1-211ENST00000595945 CAMKK2Q96RR4 588 aa18.46■□□□□ 0.55
SHKBP1-211ENST00000595945 LAMB2P55268 1798 aa18.45■□□□□ 0.54
SHKBP1-211ENST00000595945 MTX1Q13505 466 aa18.45■□□□□ 0.54
SHKBP1-211ENST00000595945 CLEC4GQ6UXB4 293 aa18.45■□□□□ 0.54
SHKBP1-211ENST00000595945 NLRP10Q86W26 655 aa18.45■□□□□ 0.54
SHKBP1-211ENST00000595945 SMC5Q8IY18 1101 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 479 ms