RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 H0YIN7 160 aa13.57□□□□□ -0.24
SHKBP1-210ENST00000595874 EIF4A1P60842 406 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-210ENST00000595874 KRT24Q2M2I5 525 aa13.57□□□□□ -0.24
SHKBP1-210ENST00000595874 PNNQ9H307 717 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-210ENST00000595874 ZBTB3Q9H5J0 574 aa13.57□□□□□ -0.24
SHKBP1-210ENST00000595874 TTLL7Q6ZT98 887 aa13.56□□□□□ -0.24
SHKBP1-210ENST00000595874 CNBD1Q8NA66 436 aa13.56□□□□□ -0.24
SHKBP1-210ENST00000595874 ADAMTS8Q9UP79 889 aa13.56□□□□□ -0.24
SHKBP1-210ENST00000595874 NIP7Q9Y221 180 aaKnown RBP eCLIP13.56□□□□□ -0.24
SHKBP1-210ENST00000595874 C21orf2O43822 256 aa13.55□□□□□ -0.24
SHKBP1-210ENST00000595874 GPTP24298 496 aa13.55□□□□□ -0.24
SHKBP1-210ENST00000595874 NBPF5PQ86XG9 351 aaPredicted RBP13.55□□□□□ -0.24
SHKBP1-210ENST00000595874 PNISRQ8TF01 805 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-210ENST00000595874 PRKRIP1Q9H875 184 aaPredicted RBP13.55□□□□□ -0.24
SHKBP1-210ENST00000595874 NMRK2Q9NPI5 230 aa13.55□□□□□ -0.24
SHKBP1-210ENST00000595874 DLEC1Q9Y238 1755 aa13.55□□□□□ -0.24
SHKBP1-210ENST00000595874 ST5P78524 1137 aa13.54□□□□□ -0.24
SHKBP1-210ENST00000595874 CCDC184Q52MB2 194 aa13.54□□□□□ -0.24
SHKBP1-210ENST00000595874 TTLL6Q8N841 843 aa13.54□□□□□ -0.24
SHKBP1-210ENST00000595874 PRELPP51888 382 aa13.53□□□□□ -0.24
SHKBP1-210ENST00000595874 AIMP1Q12904 312 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-210ENST00000595874 PROSER3Q2NL68 480 aa13.53□□□□□ -0.24
SHKBP1-210ENST00000595874 NUTM1Q86Y26 1132 aa13.53□□□□□ -0.24
SHKBP1-210ENST00000595874 RUNDC1Q96C34 613 aa13.53□□□□□ -0.24
SHKBP1-210ENST00000595874 CCDC88AQ3V6T2 1871 aa13.53□□□□□ -0.24
SHKBP1-210ENST00000595874 GTF2E1P29083 439 aaPredicted RBP13.52□□□□□ -0.25
SHKBP1-210ENST00000595874 PDE6BP35913 854 aa13.52□□□□□ -0.25
SHKBP1-210ENST00000595874 OLFM4Q6UX06 510 aa13.52□□□□□ -0.25
SHKBP1-210ENST00000595874 BRIP1Q9BX63 1249 aa13.52□□□□□ -0.25
SHKBP1-210ENST00000595874 TRIM35Q9UPQ4 493 aa13.52□□□□□ -0.25
SHKBP1-210ENST00000595874 ZNF652Q9Y2D9 606 aa13.52□□□□□ -0.25
SHKBP1-210ENST00000595874 SBF1O95248 1867 aa13.51□□□□□ -0.25
SHKBP1-210ENST00000595874 TCERG1O14776 1098 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-210ENST00000595874 KIF3CO14782 793 aa13.51□□□□□ -0.25
SHKBP1-210ENST00000595874 KIF6Q6ZMV9 814 aa13.51□□□□□ -0.25
SHKBP1-210ENST00000595874 SLC51AQ86UW1 340 aa13.51□□□□□ -0.25
SHKBP1-210ENST00000595874 NUP98P52948 1817 aa13.5□□□□□ -0.25
SHKBP1-210ENST00000595874 SLX4Q8IY92 1834 aa13.5□□□□□ -0.25
SHKBP1-210ENST00000595874 TNRC6CQ9HCJ0 1690 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-210ENST00000595874 MAP3K15Q6ZN16 1313 aa13.5□□□□□ -0.25
SHKBP1-210ENST00000595874 NFKBIEO00221 500 aa13.5□□□□□ -0.25
SHKBP1-210ENST00000595874 RRAGCQ9HB90 399 aa13.5□□□□□ -0.25
SHKBP1-210ENST00000595874 ABCC12Q96J65 1359 aa13.49□□□□□ -0.25
SHKBP1-210ENST00000595874 APAF1O14727 1248 aa13.49□□□□□ -0.25
SHKBP1-210ENST00000595874 LMOD3Q0VAK6 560 aa13.49□□□□□ -0.25
SHKBP1-210ENST00000595874 ERFEQ4G0M1 354 aa13.49□□□□□ -0.25
SHKBP1-210ENST00000595874 TIAM2Q8IVF5 1701 aa13.48□□□□□ -0.25
SHKBP1-210ENST00000595874 UBN2Q6ZU65 1347 aa13.48□□□□□ -0.25
SHKBP1-210ENST00000595874 ELL2O00472 640 aaPredicted RBP13.48□□□□□ -0.25
SHKBP1-210ENST00000595874 PRPF40BQ6NWY9 871 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-210ENST00000595874 SRGNP10124 158 aa13.47□□□□□ -0.25
SHKBP1-210ENST00000595874 PDIA6Q15084 440 aa13.47□□□□□ -0.25
SHKBP1-210ENST00000595874 SUSD4Q5VX71 490 aa13.47□□□□□ -0.25
SHKBP1-210ENST00000595874 CLEC4GQ6UXB4 293 aa13.47□□□□□ -0.25
SHKBP1-210ENST00000595874 TPTE2Q6XPS3 522 aa13.47□□□□□ -0.25
SHKBP1-210ENST00000595874 XAGE3Q8WTP9 111 aa13.47□□□□□ -0.25
SHKBP1-210ENST00000595874 MASTLQ96GX5 879 aa13.47□□□□□ -0.25
SHKBP1-210ENST00000595874 SALL2Q9Y467 1007 aaPredicted RBP13.47□□□□□ -0.25
SHKBP1-210ENST00000595874 ZNF316A6NFI3 1004 aaPredicted RBP13.46□□□□□ -0.25
SHKBP1-210ENST00000595874 ZEB1P37275 1124 aaPredicted RBP13.46□□□□□ -0.25
SHKBP1-210ENST00000595874 COPS6Q7L5N1 327 aa13.46□□□□□ -0.25
SHKBP1-210ENST00000595874 C16orf71Q8IYS4 520 aaPredicted RBP13.46□□□□□ -0.25
SHKBP1-210ENST00000595874 CNKSR1Q969H4 720 aa13.46□□□□□ -0.25
SHKBP1-210ENST00000595874 CHPF2Q9P2E5 772 aa13.46□□□□□ -0.25
SHKBP1-210ENST00000595874 LMNB1P20700 586 aa13.45□□□□□ -0.26
SHKBP1-210ENST00000595874 HTRA3P83110 453 aa13.45□□□□□ -0.26
SHKBP1-210ENST00000595874 STYK1Q6J9G0 422 aa13.45□□□□□ -0.26
SHKBP1-210ENST00000595874 C3orf67Q6ZVT6 689 aa13.45□□□□□ -0.26
SHKBP1-210ENST00000595874 MBIPQ9NS73 344 aa13.45□□□□□ -0.26
SHKBP1-210ENST00000595874 CHL1O00533 1208 aa13.44□□□□□ -0.26
SHKBP1-210ENST00000595874 NPR1P16066 1061 aa13.44□□□□□ -0.26
SHKBP1-210ENST00000595874 HDGFL1Q5TGJ6 251 aa13.44□□□□□ -0.26
SHKBP1-210ENST00000595874 SYNE4Q8N205 404 aa13.44□□□□□ -0.26
SHKBP1-210ENST00000595874 ERVV-1B6SEH8 477 aa13.43□□□□□ -0.26
SHKBP1-210ENST00000595874 FER1L6Q2WGJ9 1857 aa13.43□□□□□ -0.26
SHKBP1-210ENST00000595874 RTL5Q5HYW3 569 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-210ENST00000595874 GIGYF2Q6Y7W6 1299 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-210ENST00000595874 LRP10Q7Z4F1 713 aa13.43□□□□□ -0.26
SHKBP1-210ENST00000595874 TAOK3Q9H2K8 898 aa13.43□□□□□ -0.26
SHKBP1-210ENST00000595874 ZNF277Q9NRM2 450 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-210ENST00000595874 ARFGEF2Q9Y6D5 1785 aa13.43□□□□□ -0.26
SHKBP1-210ENST00000595874 KDM2BQ8NHM5 1336 aa13.42□□□□□ -0.26
SHKBP1-210ENST00000595874 NTSR2O95665 410 aa13.42□□□□□ -0.26
SHKBP1-210ENST00000595874 HSPA6P17066 643 aa13.42□□□□□ -0.26
SHKBP1-210ENST00000595874 DUSP27Q5VZP5 1158 aa13.42□□□□□ -0.26
SHKBP1-210ENST00000595874 ZNF34Q8IZ26 560 aa13.42□□□□□ -0.26
SHKBP1-210ENST00000595874 RPGRQ92834 1020 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-210ENST00000595874 NYXQ9GZU5 481 aa13.42□□□□□ -0.26
SHKBP1-210ENST00000595874 MRS2Q9HD23 443 aa13.42□□□□□ -0.26
SHKBP1-210ENST00000595874 ATP5J2-PTCD1G3V325 749 aa13.41□□□□□ -0.26
SHKBP1-210ENST00000595874 DDNO94850 711 aaPredicted RBP13.41□□□□□ -0.26
SHKBP1-210ENST00000595874 HCLS1P14317 486 aaPredicted RBP13.41□□□□□ -0.26
SHKBP1-210ENST00000595874 TSR2Q969E8 191 aaKnown RBP13.41□□□□□ -0.26
SHKBP1-210ENST00000595874 PDZRN3Q9UPQ7 1066 aa13.41□□□□□ -0.26
SHKBP1-210ENST00000595874 GLTPD2A6NH11 291 aa13.4□□□□□ -0.26
SHKBP1-210ENST00000595874 ANP32CO43423 234 aa13.4□□□□□ -0.26
SHKBP1-210ENST00000595874 TOMM70O94826 608 aa13.4□□□□□ -0.26
SHKBP1-210ENST00000595874 CCDC93Q567U6 631 aa13.4□□□□□ -0.26
SHKBP1-210ENST00000595874 PPP1R42Q7Z4L9 355 aa13.4□□□□□ -0.26
SHKBP1-210ENST00000595874 UTP14AQ9BVJ6 771 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms