RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CDC42BPGQ6DT37 1551 aa11.82□□□□□ -0.52
LIG3-216ENST00000593099 H3BQV1 296 aa11.82□□□□□ -0.52
LIG3-216ENST00000593099 IFFO2Q5TF58 517 aa11.82□□□□□ -0.52
LIG3-216ENST00000593099 LMBR1LQ6UX01 489 aa11.82□□□□□ -0.52
LIG3-216ENST00000593099 LAMC1P11047 1609 aa11.82□□□□□ -0.52
LIG3-216ENST00000593099 IRS4O14654 1257 aaPredicted RBP11.82□□□□□ -0.52
LIG3-216ENST00000593099 TRIM37O94972 964 aa11.82□□□□□ -0.52
LIG3-216ENST00000593099 CNBD1Q8NA66 436 aa11.82□□□□□ -0.52
LIG3-216ENST00000593099 PLBD2Q8NHP8 589 aa11.82□□□□□ -0.52
LIG3-216ENST00000593099 C20orf194Q5TEA3 1177 aa11.82□□□□□ -0.52
LIG3-216ENST00000593099 TRIM29Q14134 588 aa11.81□□□□□ -0.52
LIG3-216ENST00000593099 GBP4Q96PP9 640 aa11.81□□□□□ -0.52
LIG3-216ENST00000593099 DLC1Q96QB1 1528 aa11.81□□□□□ -0.52
LIG3-216ENST00000593099 NCOA3Q9Y6Q9 1424 aa11.81□□□□□ -0.52
LIG3-216ENST00000593099 EIF4A1P60842 406 aaKnown RBP11.81□□□□□ -0.52
LIG3-216ENST00000593099 RICTORQ6R327 1708 aa11.81□□□□□ -0.52
LIG3-216ENST00000593099 REREQ9P2R6 1566 aa11.81□□□□□ -0.52
LIG3-216ENST00000593099 BLMP54132 1417 aaPredicted RBP11.81□□□□□ -0.52
LIG3-216ENST00000593099 HSP90AA2PQ14568 343 aaPredicted RBP11.81□□□□□ -0.52
LIG3-216ENST00000593099 DZIP1Q86YF9 867 aaKnown RBP11.81□□□□□ -0.52
LIG3-216ENST00000593099 RASSF8Q8NHQ8 419 aa11.81□□□□□ -0.52
LIG3-216ENST00000593099 MEIS3Q99687 375 aa11.81□□□□□ -0.52
LIG3-216ENST00000593099 LOC102724428A0A0B4J2F2 783 aa11.8□□□□□ -0.52
LIG3-216ENST00000593099 MAP4K4O95819 1239 aaPredicted RBP11.8□□□□□ -0.52
LIG3-216ENST00000593099 SIK1P57059 783 aa11.8□□□□□ -0.52
LIG3-216ENST00000593099 RRP12Q5JTH9 1297 aaKnown RBP11.8□□□□□ -0.52
LIG3-216ENST00000593099 SLF2Q8IX21 1173 aa11.8□□□□□ -0.52
LIG3-216ENST00000593099 CCDC8Q9H0W5 538 aaPredicted RBP11.8□□□□□ -0.52
LIG3-216ENST00000593099 FOXD4L1Q9NU39 408 aa11.8□□□□□ -0.52
LIG3-216ENST00000593099 RBM19Q9Y4C8 960 aaKnown RBP11.8□□□□□ -0.52
LIG3-216ENST00000593099 TRPM1Q7Z4N2 1603 aa11.8□□□□□ -0.52
LIG3-216ENST00000593099 MAP3K12Q12852 859 aa11.8□□□□□ -0.52
LIG3-216ENST00000593099 IKQ13123 557 aaPredicted RBP11.8□□□□□ -0.52
LIG3-216ENST00000593099 PHAXQ9H814 394 aaKnown RBP11.8□□□□□ -0.52
LIG3-216ENST00000593099 SH3TC1Q8TE82 1336 aa11.8□□□□□ -0.52
LIG3-216ENST00000593099 MX1P20591 662 aa11.8□□□□□ -0.52
LIG3-216ENST00000593099 FAM182BQ5T319 152 aa11.8□□□□□ -0.52
LIG3-216ENST00000593099 CWF19L2Q2TBE0 894 aaKnown RBP11.79□□□□□ -0.52
LIG3-216ENST00000593099 AIDAQ96BJ3 306 aa11.79□□□□□ -0.52
LIG3-216ENST00000593099 BOLA2Q9H3K6 86 aa11.79□□□□□ -0.52
LIG3-216ENST00000593099 USP31Q70CQ4 1352 aa11.79□□□□□ -0.52
LIG3-216ENST00000593099 TDO2P48775 406 aa11.79□□□□□ -0.52
LIG3-216ENST00000593099 SF3A1Q15459 793 aaKnown RBP11.79□□□□□ -0.52
LIG3-216ENST00000593099 ANO8Q9HCE9 1232 aaPredicted RBP11.79□□□□□ -0.52
LIG3-216ENST00000593099 CTNNA3Q9UI47 895 aa11.79□□□□□ -0.52
LIG3-216ENST00000593099 GJD4Q96KN9 370 aaPredicted RBP11.78□□□□□ -0.52
LIG3-216ENST00000593099 LDHCP07864 332 aa11.78□□□□□ -0.52
LIG3-216ENST00000593099 CSPP1Q1MSJ5 1256 aa11.78□□□□□ -0.52
LIG3-216ENST00000593099 METTL22Q9BUU2 404 aaPredicted RBP11.78□□□□□ -0.52
LIG3-216ENST00000593099 PTPRUQ92729 1446 aa11.78□□□□□ -0.52
LIG3-216ENST00000593099 PDIA4P13667 645 aaKnown RBP11.78□□□□□ -0.52
LIG3-216ENST00000593099 CCDC191Q8NCU4 936 aa11.78□□□□□ -0.52
LIG3-216ENST00000593099 C22orf23Q9BZE7 217 aa11.78□□□□□ -0.52
LIG3-216ENST00000593099 MTMR7Q9Y216 660 aa11.78□□□□□ -0.52
LIG3-216ENST00000593099 SMARCA5O60264 1052 aaPredicted RBP11.78□□□□□ -0.52
LIG3-216ENST00000593099 IL15P40933 162 aaPredicted RBP11.78□□□□□ -0.52
LIG3-216ENST00000593099 ATP2B2Q01814 1243 aa11.78□□□□□ -0.52
LIG3-216ENST00000593099 GIGYF1O75420 1035 aaPredicted RBP11.77□□□□□ -0.52
LIG3-216ENST00000593099 AXIN2Q9Y2T1 843 aa11.77□□□□□ -0.52
LIG3-216ENST00000593099 ERBB4Q15303 1308 aa11.77□□□□□ -0.52
LIG3-216ENST00000593099 VWDEQ8N2E2 1590 aa11.77□□□□□ -0.52
LIG3-216ENST00000593099 UQCRFS1P1P0C7P4 283 aa11.77□□□□□ -0.53
LIG3-216ENST00000593099 ASAP1Q9ULH1 1129 aa11.77□□□□□ -0.53
LIG3-216ENST00000593099 CDK12Q9NYV4 1490 aaPredicted RBP11.77□□□□□ -0.53
LIG3-216ENST00000593099 ATP2B3Q16720 1220 aa11.77□□□□□ -0.53
LIG3-216ENST00000593099 ZC3H12CQ9C0D7 883 aaKnown RBP11.77□□□□□ -0.53
LIG3-216ENST00000593099 SPTY2D1Q68D10 685 aaPredicted RBP11.77□□□□□ -0.53
LIG3-216ENST00000593099 RBM17Q96I25 401 aaKnown RBP11.77□□□□□ -0.53
LIG3-216ENST00000593099 ECHDC1Q9NTX5 307 aa11.77□□□□□ -0.53
LIG3-216ENST00000593099 NSFL1CQ9UNZ2 370 aaKnown RBP11.77□□□□□ -0.53
LIG3-216ENST00000593099 TECPR2O15040 1411 aa11.76□□□□□ -0.53
LIG3-216ENST00000593099 MCTP1Q6DN14 999 aa11.76□□□□□ -0.53
LIG3-216ENST00000593099 CCAR1Q8IX12 1150 aaKnown RBP11.76□□□□□ -0.53
LIG3-216ENST00000593099 KCNQ3O43525 872 aa11.76□□□□□ -0.53
LIG3-216ENST00000593099 USP5P45974 858 aa11.76□□□□□ -0.53
LIG3-216ENST00000593099 G2E3Q7L622 706 aa11.76□□□□□ -0.53
LIG3-216ENST00000593099 FAM89AQ96GI7 184 aa11.76□□□□□ -0.53
LIG3-216ENST00000593099 TCEAL9Q9UHQ7 104 aa11.76□□□□□ -0.53
LIG3-216ENST00000593099 ATP6V1DQ9Y5K8 247 aa11.76□□□□□ -0.53
LIG3-216ENST00000593099 USP16Q9Y5T5 823 aa11.76□□□□□ -0.53
LIG3-216ENST00000593099 ATP8B2P98198 1209 aa11.75□□□□□ -0.53
LIG3-216ENST00000593099 SOS2Q07890 1332 aaPredicted RBP11.75□□□□□ -0.53
LIG3-216ENST00000593099 DIP2AQ14689 1571 aa11.75□□□□□ -0.53
LIG3-216ENST00000593099 TTF1Q15361 905 aaPredicted RBP11.75□□□□□ -0.53
LIG3-216ENST00000593099 SAFBQ15424 915 aaKnown RBP eCLIP11.75□□□□□ -0.53
LIG3-216ENST00000593099 JDP2Q8WYK2 163 aa11.75□□□□□ -0.53
LIG3-216ENST00000593099 EYA3Q99504 573 aa11.75□□□□□ -0.53
LIG3-216ENST00000593099 ANKRD2Q9GZV1 360 aa11.75□□□□□ -0.53
LIG3-216ENST00000593099 WWC3Q9ULE0 1092 aa11.75□□□□□ -0.53
LIG3-216ENST00000593099 DCCP43146 1447 aa11.75□□□□□ -0.53
LIG3-216ENST00000593099 CWC27Q6UX04 472 aaKnown RBP11.75□□□□□ -0.53
LIG3-216ENST00000593099 ZNF287Q9HBT7 754 aa11.75□□□□□ -0.53
LIG3-216ENST00000593099 DNTTIP2Q5QJE6 756 aaKnown RBP11.75□□□□□ -0.53
LIG3-216ENST00000593099 H0YIN7 160 aa11.74□□□□□ -0.53
LIG3-216ENST00000593099 CLSTN1O94985 981 aa11.74□□□□□ -0.53
LIG3-216ENST00000593099 PLCB2Q00722 1185 aa11.74□□□□□ -0.53
LIG3-216ENST00000593099 VPS72Q15906 364 aa11.74□□□□□ -0.53
LIG3-216ENST00000593099 ANKRD44Q8N8A2 993 aa11.74□□□□□ -0.53
LIG3-216ENST00000593099 RHPN1Q8TCX5 695 aa11.74□□□□□ -0.53
LIG3-216ENST00000593099 POLR3DP05423 398 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms