RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 EMILIN1Q9Y6C2 1016 aa4.16□□□□□ -1.74
VMP1-216ENST00000592790 ABCA9Q8IUA7 1624 aa4.16□□□□□ -1.74
VMP1-216ENST00000592790 NLRP1Q9C000 1473 aa4.16□□□□□ -1.74
VMP1-216ENST00000592790 ADGRB2O60241 1585 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 ZSCAN12O43309 604 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 ABCB7O75027 752 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 HOXB7P09629 217 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 IL13P35225 146 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 TRDNQ13061 729 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 CUL4AQ13619 759 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 TSR1Q2NL82 804 aaKnown RBP4.15□□□□□ -1.74
VMP1-216ENST00000592790 PPP4R3BQ5MIZ7 849 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 C8orf58Q8NAV2 365 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 SPC24Q8NBT2 197 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 RBM42Q9BTD8 480 aaKnown RBP4.15□□□□□ -1.74
VMP1-216ENST00000592790 SRRTQ9BXP5 876 aaKnown RBP4.15□□□□□ -1.74
VMP1-216ENST00000592790 TM6SF1Q9BZW5 370 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 MYOM1P52179 1685 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 CHL1O00533 1208 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 ERLIN1O75477 346 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 EIF3JO75822 258 aaKnown RBP4.15□□□□□ -1.74
VMP1-216ENST00000592790 TNNT1P13805 278 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 GJB2P29033 226 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 BMS1Q14692 1282 aaKnown RBP4.15□□□□□ -1.74
VMP1-216ENST00000592790 KRT222Q8N1A0 295 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 DDX11Q96FC9 970 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 THUMPD2Q9BTF0 503 aaKnown RBP4.15□□□□□ -1.74
VMP1-216ENST00000592790 CLIP2Q9UDT6 1046 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 CTNNA3Q9UI47 895 aa4.15□□□□□ -1.74
VMP1-216ENST00000592790 VWDEQ8N2E2 1590 aa4.15□□□□□ -1.75
VMP1-216ENST00000592790 PNPLA6Q8IY17 1366 aa4.15□□□□□ -1.75
VMP1-216ENST00000592790 POTEB2H3BUK9 544 aa4.15□□□□□ -1.75
VMP1-216ENST00000592790 ALDH1L1O75891 902 aa4.15□□□□□ -1.75
VMP1-216ENST00000592790 CDKL5O76039 1030 aa4.15□□□□□ -1.75
VMP1-216ENST00000592790 ZNF853P0CG23 659 aa4.15□□□□□ -1.75
VMP1-216ENST00000592790 EIF2S2P20042 333 aaKnown RBP4.15□□□□□ -1.75
VMP1-216ENST00000592790 DDIT3P35638 169 aa4.15□□□□□ -1.75
VMP1-216ENST00000592790 SAFBQ15424 915 aaKnown RBP eCLIP4.15□□□□□ -1.75
VMP1-216ENST00000592790 HSP90B2PQ58FF3 399 aa4.15□□□□□ -1.75
VMP1-216ENST00000592790 GAS2L3Q86XJ1 694 aa4.15□□□□□ -1.75
VMP1-216ENST00000592790 TMEM87AQ8NBN3 555 aa4.15□□□□□ -1.75
VMP1-216ENST00000592790 RNF25Q96BH1 459 aaPredicted RBP4.15□□□□□ -1.75
VMP1-216ENST00000592790 MEIS3Q99687 375 aa4.15□□□□□ -1.75
VMP1-216ENST00000592790 UPF3BQ9BZI7 483 aaKnown RBP4.15□□□□□ -1.75
VMP1-216ENST00000592790 HCLS1P14317 486 aaPredicted RBP4.14□□□□□ -1.75
VMP1-216ENST00000592790 SETQ01105 290 aaPredicted RBP4.14□□□□□ -1.75
VMP1-216ENST00000592790 RRS1Q15050 365 aaKnown RBP4.14□□□□□ -1.75
VMP1-216ENST00000592790 STK38Q15208 465 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 CWC27Q6UX04 472 aaKnown RBP4.14□□□□□ -1.75
VMP1-216ENST00000592790 NME9Q86XW9 330 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 CCDC83Q8IWF9 413 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 RHPN1Q8TCX5 695 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 GBP3Q9H0R5 595 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 FLT4P35916 1363 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 GSPT1P15170 499 aaKnown RBP4.14□□□□□ -1.75
VMP1-216ENST00000592790 SFPQP23246 707 aaKnown RBP eCLIP4.14□□□□□ -1.75
VMP1-216ENST00000592790 ZNF165P49910 485 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 MLECQ14165 292 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 POLA2Q14181 598 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 AMOTQ4VCS5 1084 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 JAKMIP3Q5VZ66 844 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 CEP135Q66GS9 1140 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 RALYLQ86SE5 291 aaKnown RBP4.14□□□□□ -1.75
VMP1-216ENST00000592790 ZGPATQ8N5A5 531 aaKnown RBP4.14□□□□□ -1.75
VMP1-216ENST00000592790 DNAAF4Q8WXU2 420 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 STAP2Q9UGK3 403 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 LRRFIP2Q9Y608 721 aaKnown RBP4.14□□□□□ -1.75
VMP1-216ENST00000592790 ABCC3O15438 1527 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 ZC3H13Q5T200 1668 aaKnown RBP4.14□□□□□ -1.75
VMP1-216ENST00000592790 HSPA4P34932 840 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 NLRP6P59044 892 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 TMCO3Q6UWJ1 677 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 MCM10Q7L590 875 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 RIC3Q7Z5B4 369 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 TTC5Q8N0Z6 440 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 ZNF397Q8NF99 534 aaPredicted RBP4.14□□□□□ -1.75
VMP1-216ENST00000592790 UBXN4Q92575 508 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 SMARCE1Q969G3 411 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 TMEM63CQ9P1W3 806 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 CHMP3Q9Y3E7 222 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 MYO1BO43795 1136 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 SMC2O95347 1197 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 IPO7O95373 1038 aaKnown RBP4.14□□□□□ -1.75
VMP1-216ENST00000592790 MCM3P25205 808 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 LEKR1Q6ZMV7 388 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 AACSQ86V21 672 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 TSPYL6Q8N831 410 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 KCNH5Q8NCM2 988 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 KCNV2Q8TDN2 545 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 HYPKQ9NX55 129 aa4.14□□□□□ -1.75
VMP1-216ENST00000592790 DBF4Q9UBU7 674 aaPredicted RBP4.14□□□□□ -1.75
VMP1-216ENST00000592790 ME1P48163 572 aa4.13□□□□□ -1.75
VMP1-216ENST00000592790 CBX1P83916 185 aa4.13□□□□□ -1.75
VMP1-216ENST00000592790 TYRO3Q06418 890 aa4.13□□□□□ -1.75
VMP1-216ENST00000592790 FILIP1LQ4L180 1135 aa4.13□□□□□ -1.75
VMP1-216ENST00000592790 ZSCAN25Q6NSZ9 544 aa4.13□□□□□ -1.75
VMP1-216ENST00000592790 PRPF40BQ6NWY9 871 aaKnown RBP4.13□□□□□ -1.75
VMP1-216ENST00000592790 TXNDC2Q86VQ3 553 aa4.13□□□□□ -1.75
VMP1-216ENST00000592790 CNPY2Q9Y2B0 182 aa4.13□□□□□ -1.75
VMP1-216ENST00000592790 ELP1O95163 1332 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 153.5 ms