RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 IQCA1LA6NCM1 817 aa23.44■■□□□ 1.34
RETREG3-210ENST00000590541 A1BGP04217 495 aa23.44■■□□□ 1.34
RETREG3-210ENST00000590541 SOGA3Q5TF21 947 aa23.44■■□□□ 1.34
RETREG3-210ENST00000590541 TAF1DQ9H5J8 278 aaPredicted RBP23.44■■□□□ 1.34
RETREG3-210ENST00000590541 SIPA1L3O60292 1781 aaPredicted RBP23.43■■□□□ 1.34
RETREG3-210ENST00000590541 ST5P78524 1137 aa23.43■■□□□ 1.34
RETREG3-210ENST00000590541 TEFQ10587 303 aa23.43■■□□□ 1.34
RETREG3-210ENST00000590541 C7orf43Q8WVR3 580 aa23.43■■□□□ 1.34
RETREG3-210ENST00000590541 SCN4AP35499 1836 aa23.43■■□□□ 1.34
RETREG3-210ENST00000590541 NPHP1O15259 732 aa23.42■■□□□ 1.34
RETREG3-210ENST00000590541 ITGBL1O95965 494 aaPredicted RBP23.42■■□□□ 1.34
RETREG3-210ENST00000590541 VEGFBP49765 207 aa23.42■■□□□ 1.34
RETREG3-210ENST00000590541 BCORQ6W2J9 1755 aa23.42■■□□□ 1.34
RETREG3-210ENST00000590541 TMEM88BA6NKF7 163 aa23.4■■□□□ 1.34
RETREG3-210ENST00000590541 GNAT3A8MTJ3 354 aa23.4■■□□□ 1.34
RETREG3-210ENST00000590541 CTCFP49711 727 aaPredicted RBP23.4■■□□□ 1.34
RETREG3-210ENST00000590541 FMNL2Q96PY5 1086 aa23.4■■□□□ 1.34
RETREG3-210ENST00000590541 DZIP3Q86Y13 1208 aaKnown RBP23.39■■□□□ 1.33
RETREG3-210ENST00000590541 ZNF541Q9H0D2 1346 aa23.38■■□□□ 1.33
RETREG3-210ENST00000590541 KCNQ3O43525 872 aa23.38■■□□□ 1.33
RETREG3-210ENST00000590541 CCDC93Q567U6 631 aa23.38■■□□□ 1.33
RETREG3-210ENST00000590541 NPM2Q86SE8 214 aaKnown RBP23.38■■□□□ 1.33
RETREG3-210ENST00000590541 AIDAQ96BJ3 306 aa23.38■■□□□ 1.33
RETREG3-210ENST00000590541 WBP1LQ9NX94 342 aa23.38■■□□□ 1.33
RETREG3-210ENST00000590541 ADAMTSL1Q8N6G6 1762 aa23.37■■□□□ 1.33
RETREG3-210ENST00000590541 COL3A1P02461 1466 aaPredicted RBP23.37■■□□□ 1.33
RETREG3-210ENST00000590541 EAPPQ56P03 285 aaPredicted RBP23.37■■□□□ 1.33
RETREG3-210ENST00000590541 GAS2L2Q8NHY3 880 aa23.37■■□□□ 1.33
RETREG3-210ENST00000590541 PER1O15534 1290 aaPredicted RBP23.36■■□□□ 1.33
RETREG3-210ENST00000590541 PIP4K2AP48426 406 aaPredicted RBP23.36■■□□□ 1.33
RETREG3-210ENST00000590541 FKBP4Q02790 459 aaKnown RBP eCLIP23.36■■□□□ 1.33
RETREG3-210ENST00000590541 ZNF277Q9NRM2 450 aaPredicted RBP23.36■■□□□ 1.33
RETREG3-210ENST00000590541 CEMIPQ8WUJ3 1361 aa23.36■■□□□ 1.33
RETREG3-210ENST00000590541 KLRG2A4D1S0 409 aaPredicted RBP23.35■■□□□ 1.33
RETREG3-210ENST00000590541 LBX1P52954 281 aa23.35■■□□□ 1.33
RETREG3-210ENST00000590541 CC2D1BQ5T0F9 858 aaKnown RBP23.35■■□□□ 1.33
RETREG3-210ENST00000590541 OLFM4Q6UX06 510 aa23.35■■□□□ 1.33
RETREG3-210ENST00000590541 NBPF5PQ86XG9 351 aaPredicted RBP23.35■■□□□ 1.33
RETREG3-210ENST00000590541 HACL1Q9UJ83 578 aa23.35■■□□□ 1.33
RETREG3-210ENST00000590541 USP16Q9Y5T5 823 aa23.35■■□□□ 1.33
RETREG3-210ENST00000590541 NPR1P16066 1061 aa23.34■■□□□ 1.33
RETREG3-210ENST00000590541 CLEC4GQ6UXB4 293 aa23.34■■□□□ 1.33
RETREG3-210ENST00000590541 KIF7Q2M1P5 1343 aa23.33■■□□□ 1.33
RETREG3-210ENST00000590541 U2SURPO15042 1029 aaKnown RBP23.33■■□□□ 1.33
RETREG3-210ENST00000590541 EPHX2P34913 555 aa23.33■■□□□ 1.33
RETREG3-210ENST00000590541 CLEC11AQ9Y240 323 aa23.33■■□□□ 1.33
RETREG3-210ENST00000590541 PRAMEF22A3QJZ6 481 aa23.32■■□□□ 1.32
RETREG3-210ENST00000590541 RASSF10A6NK89 507 aa23.32■■□□□ 1.32
RETREG3-210ENST00000590541 BTBD11A6QL63 1104 aa23.32■■□□□ 1.32
RETREG3-210ENST00000590541 MAP1SQ66K74 1059 aaPredicted RBP23.31■■□□□ 1.32
RETREG3-210ENST00000590541 RNF123Q5XPI4 1314 aa23.31■■□□□ 1.32
RETREG3-210ENST00000590541 FZD9O00144 591 aa23.3■■□□□ 1.32
RETREG3-210ENST00000590541 HSPA8P11142 646 aaKnown RBP23.3■■□□□ 1.32
RETREG3-210ENST00000590541 DEFB115Q30KQ5 88 aa23.3■■□□□ 1.32
RETREG3-210ENST00000590541 RTKN2Q8IZC4 609 aa23.3■■□□□ 1.32
RETREG3-210ENST00000590541 CNTROBQ8N137 903 aa23.3■■□□□ 1.32
RETREG3-210ENST00000590541 PNMA8AQ86V59 439 aaPredicted RBP23.29■■□□□ 1.32
RETREG3-210ENST00000590541 PHACTR3Q96KR7 559 aa23.29■■□□□ 1.32
RETREG3-210ENST00000590541 ZNF652Q9Y2D9 606 aa23.29■■□□□ 1.32
RETREG3-210ENST00000590541 IARSP41252 1262 aaKnown RBP23.28■■□□□ 1.32
RETREG3-210ENST00000590541 TPTE2Q6XPS3 522 aa23.28■■□□□ 1.32
RETREG3-210ENST00000590541 SYNE4Q8N205 404 aa23.27■■□□□ 1.32
RETREG3-210ENST00000590541 ABHD8Q96I13 439 aa23.27■■□□□ 1.32
RETREG3-210ENST00000590541 NIP7Q9Y221 180 aaKnown RBP eCLIP23.27■■□□□ 1.32
RETREG3-210ENST00000590541 WDR33Q9C0J8 1336 aaKnown RBP23.27■■□□□ 1.32
RETREG3-210ENST00000590541 SNED1Q8TER0 1413 aa23.26■■□□□ 1.31
RETREG3-210ENST00000590541 GPC2Q8N158 579 aa23.26■■□□□ 1.31
RETREG3-210ENST00000590541 FAM177BA6PVY3 158 aa23.25■■□□□ 1.31
RETREG3-210ENST00000590541 NBPF26B4DH59 902 aa23.25■■□□□ 1.31
RETREG3-210ENST00000590541 SNRPA1P09661 255 aaKnown RBP23.25■■□□□ 1.31
RETREG3-210ENST00000590541 ALDH1B1P30837 517 aa23.25■■□□□ 1.31
RETREG3-210ENST00000590541 NBPF10Q6P3W6 841 aaKnown RBP23.25■■□□□ 1.31
RETREG3-210ENST00000590541 NBPF15Q8N660 670 aa23.25■■□□□ 1.31
RETREG3-210ENST00000590541 RGL2O15211 777 aa23.24■■□□□ 1.31
RETREG3-210ENST00000590541 SLC34A2O95436 690 aa23.24■■□□□ 1.31
RETREG3-210ENST00000590541 PRKAR2BP31323 418 aa23.24■■□□□ 1.31
RETREG3-210ENST00000590541 MAP2K1Q02750 393 aaPredicted RBP23.24■■□□□ 1.31
RETREG3-210ENST00000590541 RSPH6AQ9H0K4 717 aa23.23■■□□□ 1.31
RETREG3-210ENST00000590541 DDX21Q9NR30 783 aaKnown RBP eCLIP23.23■■□□□ 1.31
RETREG3-210ENST00000590541 ABT1Q9ULW3 272 aaKnown RBP23.23■■□□□ 1.31
RETREG3-210ENST00000590541 COL4A5P29400 1685 aa23.22■■□□□ 1.31
RETREG3-210ENST00000590541 LTBP1Q14766 1721 aa23.22■■□□□ 1.31
RETREG3-210ENST00000590541 HLFQ16534 295 aa23.22■■□□□ 1.31
RETREG3-210ENST00000590541 PSMD1Q99460 953 aa23.22■■□□□ 1.31
RETREG3-210ENST00000590541 NPC1L1Q9UHC9 1359 aa23.22■■□□□ 1.31
RETREG3-210ENST00000590541 CNGB1Q14028 1251 aaPredicted RBP23.21■■□□□ 1.31
RETREG3-210ENST00000590541 FAM161AQ3B820 660 aa23.21■■□□□ 1.31
RETREG3-210ENST00000590541 THSD7BQ9C0I4 1608 aa23.21■■□□□ 1.31
RETREG3-210ENST00000590541 FMR1Q06787 632 aaKnown RBP eCLIP23.2■■□□□ 1.3
RETREG3-210ENST00000590541 MCM10Q7L590 875 aa23.2■■□□□ 1.3
RETREG3-210ENST00000590541 JDP2Q8WYK2 163 aa23.2■■□□□ 1.3
RETREG3-210ENST00000590541 CRY2Q49AN0 593 aa23.19■■□□□ 1.3
RETREG3-210ENST00000590541 GJA3Q9Y6H8 435 aa23.19■■□□□ 1.3
RETREG3-210ENST00000590541 ABCC12Q96J65 1359 aa23.18■■□□□ 1.3
RETREG3-210ENST00000590541 GTF2E1P29083 439 aaPredicted RBP23.17■■□□□ 1.3
RETREG3-210ENST00000590541 EPS15P42566 896 aa23.17■■□□□ 1.3
RETREG3-210ENST00000590541 SCNN1DP51172 638 aa23.17■■□□□ 1.3
RETREG3-210ENST00000590541 EIF6P56537 245 aaKnown RBP23.17■■□□□ 1.3
RETREG3-210ENST00000590541 CAPNS2Q96L46 248 aa23.17■■□□□ 1.3
RETREG3-210ENST00000590541 NUTM1Q86Y26 1132 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 135.4 ms