RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 NFKBIEO00221 500 aa13.81□□□□□ -0.2
LIG3-212ENST00000590181 CLEC4GQ6UXB4 293 aa13.81□□□□□ -0.2
LIG3-212ENST00000590181 C2CD5Q86YS7 1000 aa13.81□□□□□ -0.2
LIG3-212ENST00000590181 SERPINB2P05120 415 aa13.8□□□□□ -0.2
LIG3-212ENST00000590181 MCM10Q7L590 875 aa13.8□□□□□ -0.2
LIG3-212ENST00000590181 TTLL6Q8N841 843 aa13.8□□□□□ -0.2
LIG3-212ENST00000590181 SCN4AP35499 1836 aa13.79□□□□□ -0.2
LIG3-212ENST00000590181 SLX4Q8IY92 1834 aa13.79□□□□□ -0.2
LIG3-212ENST00000590181 CANXP27824 592 aaKnown RBP13.79□□□□□ -0.2
LIG3-212ENST00000590181 RUNDC1Q96C34 613 aa13.79□□□□□ -0.2
LIG3-212ENST00000590181 BCL2L12Q9HB09 334 aa13.79□□□□□ -0.2
LIG3-212ENST00000590181 H0YIN7 160 aa13.78□□□□□ -0.2
LIG3-212ENST00000590181 CHMP4AQ9BY43 222 aa13.78□□□□□ -0.2
LIG3-212ENST00000590181 ZNF652Q9Y2D9 606 aa13.78□□□□□ -0.2
LIG3-212ENST00000590181 RIPK4P57078 832 aa13.77□□□□□ -0.21
LIG3-212ENST00000590181 ERBB4Q15303 1308 aa13.77□□□□□ -0.21
LIG3-212ENST00000590181 BICDL1Q6ZP65 573 aa13.77□□□□□ -0.21
LIG3-212ENST00000590181 TMPOP42166 694 aaKnown RBP13.76□□□□□ -0.21
LIG3-212ENST00000590181 CALD1Q05682 793 aaKnown RBP13.76□□□□□ -0.21
LIG3-212ENST00000590181 ZNF219Q9P2Y4 722 aaPredicted RBP13.76□□□□□ -0.21
LIG3-212ENST00000590181 USP16Q9Y5T5 823 aa13.76□□□□□ -0.21
LIG3-212ENST00000590181 ZNF316A6NFI3 1004 aaPredicted RBP13.75□□□□□ -0.21
LIG3-212ENST00000590181 SETDB2Q96T68 719 aa13.75□□□□□ -0.21
LIG3-212ENST00000590181 ADAMTSL1Q8N6G6 1762 aa13.75□□□□□ -0.21
LIG3-212ENST00000590181 POTECB2RU33 542 aa13.74□□□□□ -0.21
LIG3-212ENST00000590181 C21orf2O43822 256 aa13.74□□□□□ -0.21
LIG3-212ENST00000590181 A1BGP04217 495 aa13.74□□□□□ -0.21
LIG3-212ENST00000590181 EIF4A1P60842 406 aaKnown RBP13.74□□□□□ -0.21
LIG3-212ENST00000590181 DCTN1Q14203 1278 aa13.74□□□□□ -0.21
LIG3-212ENST00000590181 ERFEQ4G0M1 354 aa13.74□□□□□ -0.21
LIG3-212ENST00000590181 NCBP3Q53F19 620 aaKnown RBP13.74□□□□□ -0.21
LIG3-212ENST00000590181 DPY19L2Q6NUT2 758 aa13.74□□□□□ -0.21
LIG3-212ENST00000590181 ZNF622Q969S3 477 aaKnown RBP eCLIP13.74□□□□□ -0.21
LIG3-212ENST00000590181 MKRN1Q9UHC7 482 aaKnown RBP13.74□□□□□ -0.21
LIG3-212ENST00000590181 KDM3BQ7LBC6 1761 aa13.73□□□□□ -0.21
LIG3-212ENST00000590181 LTBP3Q9NS15 1303 aa13.73□□□□□ -0.21
LIG3-212ENST00000590181 ERVV-1B6SEH8 477 aa13.73□□□□□ -0.21
LIG3-212ENST00000590181 KCNQ3O43525 872 aa13.73□□□□□ -0.21
LIG3-212ENST00000590181 PDE6BP35913 854 aa13.73□□□□□ -0.21
LIG3-212ENST00000590181 TBC1D9BQ66K14 1250 aa13.73□□□□□ -0.21
LIG3-212ENST00000590181 CHADLQ6NUI6 762 aa13.73□□□□□ -0.21
LIG3-212ENST00000590181 DZIP3Q86Y13 1208 aaKnown RBP13.73□□□□□ -0.21
LIG3-212ENST00000590181 TAOK3Q9H2K8 898 aa13.73□□□□□ -0.21
LIG3-212ENST00000590181 CREBZFQ9NS37 354 aa13.73□□□□□ -0.21
LIG3-212ENST00000590181 ADAMTS8Q9UP79 889 aa13.73□□□□□ -0.21
LIG3-212ENST00000590181 ZNF330Q9Y3S2 320 aaPredicted RBP13.73□□□□□ -0.21
LIG3-212ENST00000590181 LAMB4A4D0S4 1761 aa13.73□□□□□ -0.21
LIG3-212ENST00000590181 HOXB7P09629 217 aa13.72□□□□□ -0.21
LIG3-212ENST00000590181 PRR5LQ6MZQ0 368 aa13.72□□□□□ -0.21
LIG3-212ENST00000590181 CCDC24Q8N4L8 307 aa13.72□□□□□ -0.21
LIG3-212ENST00000590181 BRIP1Q9BX63 1249 aa13.72□□□□□ -0.21
LIG3-212ENST00000590181 TSPYL4Q9UJ04 414 aa13.72□□□□□ -0.21
LIG3-212ENST00000590181 THSD7BQ9C0I4 1608 aa13.72□□□□□ -0.21
LIG3-212ENST00000590181 CNTNAP1P78357 1384 aa13.71□□□□□ -0.21
LIG3-212ENST00000590181 CHL1O00533 1208 aa13.71□□□□□ -0.21
LIG3-212ENST00000590181 CAMTA2O94983 1202 aa13.71□□□□□ -0.21
LIG3-212ENST00000590181 POTEIP0CG38 1075 aa13.71□□□□□ -0.21
LIG3-212ENST00000590181 POTEJP0CG39 1038 aa13.71□□□□□ -0.21
LIG3-212ENST00000590181 TPTE2Q6XPS3 522 aa13.71□□□□□ -0.21
LIG3-212ENST00000590181 TBC1D2BQ9UPU7 963 aa13.71□□□□□ -0.21
LIG3-212ENST00000590181 NPHP1O15259 732 aa13.7□□□□□ -0.22
LIG3-212ENST00000590181 ANP32CO43423 234 aa13.7□□□□□ -0.22
LIG3-212ENST00000590181 ST5P78524 1137 aa13.7□□□□□ -0.22
LIG3-212ENST00000590181 CNBD1Q8NA66 436 aa13.7□□□□□ -0.22
LIG3-212ENST00000590181 FOXN1O15353 648 aa13.69□□□□□ -0.22
LIG3-212ENST00000590181 DDNO94850 711 aaPredicted RBP13.69□□□□□ -0.22
LIG3-212ENST00000590181 PRPF40BQ6NWY9 871 aaKnown RBP13.69□□□□□ -0.22
LIG3-212ENST00000590181 CFAP44Q96MT7 982 aa13.69□□□□□ -0.22
LIG3-212ENST00000590181 MIS18AQ9NYP9 233 aa13.69□□□□□ -0.22
LIG3-212ENST00000590181 SOGA3Q5TF21 947 aa13.68□□□□□ -0.22
LIG3-212ENST00000590181 KIF6Q6ZMV9 814 aa13.68□□□□□ -0.22
LIG3-212ENST00000590181 NGEFQ8N5V2 710 aa13.68□□□□□ -0.22
LIG3-212ENST00000590181 NYXQ9GZU5 481 aa13.68□□□□□ -0.22
LIG3-212ENST00000590181 PASKQ96RG2 1323 aa13.67□□□□□ -0.22
LIG3-212ENST00000590181 IQCA1LA6NCM1 817 aa13.67□□□□□ -0.22
LIG3-212ENST00000590181 NBPF26B4DH59 902 aa13.67□□□□□ -0.22
LIG3-212ENST00000590181 STYK1Q6J9G0 422 aa13.67□□□□□ -0.22
LIG3-212ENST00000590181 NBPF10Q6P3W6 841 aaKnown RBP13.67□□□□□ -0.22
LIG3-212ENST00000590181 LDHDQ86WU2 507 aa13.67□□□□□ -0.22
LIG3-212ENST00000590181 NBPF15Q8N660 670 aa13.67□□□□□ -0.22
LIG3-212ENST00000590181 CNKSR1Q969H4 720 aa13.67□□□□□ -0.22
LIG3-212ENST00000590181 AIDAQ96BJ3 306 aa13.67□□□□□ -0.22
LIG3-212ENST00000590181 GNAI1P63096 354 aa13.66□□□□□ -0.22
LIG3-212ENST00000590181 NBPF5PQ86XG9 351 aaPredicted RBP13.66□□□□□ -0.22
LIG3-212ENST00000590181 L3MBTL3Q96JM7 780 aaPredicted RBP13.66□□□□□ -0.22
LIG3-212ENST00000590181 TRIM35Q9UPQ4 493 aa13.66□□□□□ -0.22
LIG3-212ENST00000590181 MAP3K15Q6ZN16 1313 aa13.65□□□□□ -0.22
LIG3-212ENST00000590181 ZNF541Q9H0D2 1346 aa13.65□□□□□ -0.22
LIG3-212ENST00000590181 TRPM7Q96QT4 1865 aa13.65□□□□□ -0.22
LIG3-212ENST00000590181 PRAMEF22A3QJZ6 481 aa13.65□□□□□ -0.22
LIG3-212ENST00000590181 KLRG2A4D1S0 409 aaPredicted RBP13.65□□□□□ -0.22
LIG3-212ENST00000590181 NEUROD2Q15784 382 aa13.65□□□□□ -0.22
LIG3-212ENST00000590181 CCDC27Q2M243 656 aa13.65□□□□□ -0.22
LIG3-212ENST00000590181 GRIPAP1Q4V328 841 aa13.65□□□□□ -0.22
LIG3-212ENST00000590181 HSP90AB3PQ58FF7 597 aa13.65□□□□□ -0.22
LIG3-212ENST00000590181 MASTLQ96GX5 879 aa13.65□□□□□ -0.22
LIG3-212ENST00000590181 RNF123Q5XPI4 1314 aa13.64□□□□□ -0.23
LIG3-212ENST00000590181 LTBP1Q14766 1721 aa13.64□□□□□ -0.23
LIG3-212ENST00000590181 IBTKQ9P2D0 1353 aaPredicted RBP13.64□□□□□ -0.23
LIG3-212ENST00000590181 SRGNP10124 158 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms