RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 ERCC6Q03468 1493 aa5.43□□□□□ -1.54
ZNF540-207ENST00000589285 CD33P20138 364 aa5.43□□□□□ -1.54
ZNF540-207ENST00000589285 A0A1W2PNR3 127 aa5.42□□□□□ -1.54
ZNF540-207ENST00000589285 CSB-PGBD3P0DP91 1061 aa5.42□□□□□ -1.54
ZNF540-207ENST00000589285 GMPRP36959 345 aa5.42□□□□□ -1.54
ZNF540-207ENST00000589285 PSMA6P60900 246 aaKnown RBP5.42□□□□□ -1.54
ZNF540-207ENST00000589285 UBAP2LQ14157 1087 aaKnown RBP5.42□□□□□ -1.54
ZNF540-207ENST00000589285 COX20Q5RI15 118 aa5.42□□□□□ -1.54
ZNF540-207ENST00000589285 LCE2AQ5TA79 106 aaPredicted RBP5.42□□□□□ -1.54
ZNF540-207ENST00000589285 CDK2AP1O14519 115 aa5.42□□□□□ -1.54
ZNF540-207ENST00000589285 GRNP28799 593 aaKnown RBP5.42□□□□□ -1.54
ZNF540-207ENST00000589285 GAS6Q14393 721 aa5.42□□□□□ -1.54
ZNF540-207ENST00000589285 ETFBKMTQ8IXQ9 262 aa5.42□□□□□ -1.54
ZNF540-207ENST00000589285 BNIP3LO60238 219 aa5.41□□□□□ -1.54
ZNF540-207ENST00000589285 CNTNAP3BQ96NU0 1288 aa5.41□□□□□ -1.54
ZNF540-207ENST00000589285 CNTNAP3Q9BZ76 1288 aa5.41□□□□□ -1.54
ZNF540-207ENST00000589285 CXXC1Q9P0U4 656 aaPredicted RBP5.41□□□□□ -1.54
ZNF540-207ENST00000589285 CTBSQ01459 385 aa5.41□□□□□ -1.54
ZNF540-207ENST00000589285 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.41□□□□□ -1.54
ZNF540-207ENST00000589285 LZTS3O60299 673 aaPredicted RBP5.41□□□□□ -1.54
ZNF540-207ENST00000589285 SSFA2P28290 1259 aa5.41□□□□□ -1.54
ZNF540-207ENST00000589285 GPC1P35052 558 aa5.41□□□□□ -1.54
ZNF540-207ENST00000589285 ZIC5Q96T25 663 aa5.41□□□□□ -1.54
ZNF540-207ENST00000589285 COL25A1Q9BXS0 654 aaPredicted RBP5.41□□□□□ -1.54
ZNF540-207ENST00000589285 SPATA31C2B4DYI2 1134 aa5.4□□□□□ -1.54
ZNF540-207ENST00000589285 F11P03951 625 aa5.4□□□□□ -1.54
ZNF540-207ENST00000589285 SFSWAPQ12872 951 aaKnown RBP5.4□□□□□ -1.54
ZNF540-207ENST00000589285 KRT25Q7Z3Z0 450 aa5.4□□□□□ -1.54
ZNF540-207ENST00000589285 RGL4Q8IZJ4 473 aa5.4□□□□□ -1.54
ZNF540-207ENST00000589285 KIFC2Q96AC6 838 aa5.4□□□□□ -1.54
ZNF540-207ENST00000589285 DYRK1BQ9Y463 629 aa5.4□□□□□ -1.54
ZNF540-207ENST00000589285 DNMT3AQ9Y6K1 912 aaPredicted RBP5.4□□□□□ -1.54
ZNF540-207ENST00000589285 C2CD2LO14523 706 aa5.4□□□□□ -1.55
ZNF540-207ENST00000589285 NUCKS1Q9H1E3 243 aaKnown RBP5.4□□□□□ -1.55
ZNF540-207ENST00000589285 A0A1B0GTH6 734 aa5.39□□□□□ -1.55
ZNF540-207ENST00000589285 H3BM21 787 aa5.39□□□□□ -1.55
ZNF540-207ENST00000589285 KHNYNO15037 678 aaKnown RBP5.39□□□□□ -1.55
ZNF540-207ENST00000589285 PCBP4P57723 403 aaKnown RBP5.39□□□□□ -1.55
ZNF540-207ENST00000589285 RHPN1Q8TCX5 695 aa5.39□□□□□ -1.55
ZNF540-207ENST00000589285 WHAMMQ8TF30 809 aa5.39□□□□□ -1.55
ZNF540-207ENST00000589285 GTF3C2Q8WUA4 911 aaPredicted RBP5.39□□□□□ -1.55
ZNF540-207ENST00000589285 WFS1O76024 890 aa5.39□□□□□ -1.55
ZNF540-207ENST00000589285 IGFLR1Q9H665 355 aa5.39□□□□□ -1.55
ZNF540-207ENST00000589285 GTF2E1P29083 439 aaPredicted RBP5.38□□□□□ -1.55
ZNF540-207ENST00000589285 NBPF1Q3BBV0 1214 aa5.38□□□□□ -1.55
ZNF540-207ENST00000589285 SUSD3Q96L08 255 aa5.38□□□□□ -1.55
ZNF540-207ENST00000589285 CEP63Q96MT8 703 aa5.38□□□□□ -1.55
ZNF540-207ENST00000589285 MPSTP25325 297 aa5.38□□□□□ -1.55
ZNF540-207ENST00000589285 TEAD4Q15561 434 aa5.38□□□□□ -1.55
ZNF540-207ENST00000589285 C1orf229Q6ZS94 237 aaPredicted RBP5.38□□□□□ -1.55
ZNF540-207ENST00000589285 CLP1Q92989 425 aaKnown RBP5.38□□□□□ -1.55
ZNF540-207ENST00000589285 TNFRSF10BO14763 440 aa5.37□□□□□ -1.55
ZNF540-207ENST00000589285 PPP1R15AO75807 674 aaPredicted RBP5.37□□□□□ -1.55
ZNF540-207ENST00000589285 MAPTP10636 758 aaKnown RBP5.37□□□□□ -1.55
ZNF540-207ENST00000589285 ELOAQ14241 798 aaKnown RBP5.37□□□□□ -1.55
ZNF540-207ENST00000589285 SWI5Q1ZZU3 235 aa5.37□□□□□ -1.55
ZNF540-207ENST00000589285 ERICH6Q7L0X2 663 aa5.37□□□□□ -1.55
ZNF540-207ENST00000589285 RANGAP1P46060 587 aaPredicted RBP5.37□□□□□ -1.55
ZNF540-207ENST00000589285 TBC1D8BQ0IIM8 1120 aa5.37□□□□□ -1.55
ZNF540-207ENST00000589285 TREML4Q6UXN2 200 aa5.37□□□□□ -1.55
ZNF540-207ENST00000589285 VTI1AQ96AJ9 217 aa5.37□□□□□ -1.55
ZNF540-207ENST00000589285 KIF21AQ7Z4S6 1674 aa5.37□□□□□ -1.55
ZNF540-207ENST00000589285 IGFBP4P22692 258 aa5.37□□□□□ -1.55
ZNF540-207ENST00000589285 SLC30A3Q99726 388 aa5.37□□□□□ -1.55
ZNF540-207ENST00000589285 GJA3Q9Y6H8 435 aa5.37□□□□□ -1.55
ZNF540-207ENST00000589285 TARSP26639 723 aaKnown RBP5.36□□□□□ -1.55
ZNF540-207ENST00000589285 GPR152Q8TDT2 470 aa5.36□□□□□ -1.55
ZNF540-207ENST00000589285 BRD7Q9NPI1 651 aa5.36□□□□□ -1.55
ZNF540-207ENST00000589285 CCDC87Q9NVE4 849 aa5.36□□□□□ -1.55
ZNF540-207ENST00000589285 MRC2Q9UBG0 1479 aa5.36□□□□□ -1.55
ZNF540-207ENST00000589285 TYRO3Q06418 890 aa5.36□□□□□ -1.55
ZNF540-207ENST00000589285 TREML1Q86YW5 311 aa5.36□□□□□ -1.55
ZNF540-207ENST00000589285 CCDC125Q86Z20 511 aa5.36□□□□□ -1.55
ZNF540-207ENST00000589285 PGBD3Q8N328 593 aa5.36□□□□□ -1.55
ZNF540-207ENST00000589285 H3BRB1 525 aa5.35□□□□□ -1.55
ZNF540-207ENST00000589285 TATP17735 454 aaPredicted RBP5.35□□□□□ -1.55
ZNF540-207ENST00000589285 TRIP4Q15650 581 aaPredicted RBP5.35□□□□□ -1.55
ZNF540-207ENST00000589285 TUT1Q9H6E5 874 aaKnown RBP5.35□□□□□ -1.55
ZNF540-207ENST00000589285 PDS5BQ9NTI5 1447 aa5.35□□□□□ -1.55
ZNF540-207ENST00000589285 OPLAHO14841 1288 aa5.35□□□□□ -1.55
ZNF540-207ENST00000589285 TRIM22Q8IYM9 498 aa5.35□□□□□ -1.55
ZNF540-207ENST00000589285 IVNS1ABPQ9Y6Y0 642 aa5.35□□□□□ -1.55
ZNF540-207ENST00000589285 IDH3AP50213 366 aa5.34□□□□□ -1.55
ZNF540-207ENST00000589285 EFHC2Q5JST6 749 aa5.34□□□□□ -1.55
ZNF540-207ENST00000589285 C16orf46Q6P387 395 aa5.34□□□□□ -1.55
ZNF540-207ENST00000589285 BTLAQ7Z6A9 289 aa5.34□□□□□ -1.55
ZNF540-207ENST00000589285 ABCC8Q09428 1581 aa5.34□□□□□ -1.55
ZNF540-207ENST00000589285 M0R2N6 131 aa5.34□□□□□ -1.55
ZNF540-207ENST00000589285 MLLT1Q03111 559 aaPredicted RBP5.34□□□□□ -1.55
ZNF540-207ENST00000589285 DNM1Q05193 864 aaKnown RBP5.34□□□□□ -1.55
ZNF540-207ENST00000589285 IFT43Q96FT9 208 aa5.34□□□□□ -1.55
ZNF540-207ENST00000589285 ATXN7O15265 892 aaPredicted RBP5.34□□□□□ -1.56
ZNF540-207ENST00000589285 CMTR1Q8N1G2 835 aaKnown RBP5.34□□□□□ -1.56
ZNF540-207ENST00000589285 NEURL1BA8MQ27 555 aa5.33□□□□□ -1.56
ZNF540-207ENST00000589285 AAMPQ13685 434 aa5.33□□□□□ -1.56
ZNF540-207ENST00000589285 DMGDHQ9UI17 866 aaKnown RBP5.33□□□□□ -1.56
ZNF540-207ENST00000589285 KLF15Q9UIH9 416 aa5.33□□□□□ -1.56
ZNF540-207ENST00000589285 TRPA1O75762 1119 aa5.33□□□□□ -1.56
ZNF540-207ENST00000589285 TNP2Q05952 138 aa5.33□□□□□ -1.56
ZNF540-207ENST00000589285 SV2AQ7L0J3 742 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms