RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 NPHP1O15259 732 aa18.68■□□□□ 0.58
VMP1-209ENST00000588915 MASTLQ96GX5 879 aa18.68■□□□□ 0.58
VMP1-209ENST00000588915 ZNF652Q9Y2D9 606 aa18.68■□□□□ 0.58
VMP1-209ENST00000588915 POTECB2RU33 542 aa18.67■□□□□ 0.58
VMP1-209ENST00000588915 U2AF1L5P0DN76 240 aaPredicted RBP18.67■□□□□ 0.58
VMP1-209ENST00000588915 U2AF1Q01081 240 aaKnown RBP eCLIP18.67■□□□□ 0.58
VMP1-209ENST00000588915 TAOK3Q9H2K8 898 aa18.67■□□□□ 0.58
VMP1-209ENST00000588915 FER1L6Q2WGJ9 1857 aa18.67■□□□□ 0.58
VMP1-209ENST00000588915 PPP2R1AP30153 589 aa18.66■□□□□ 0.58
VMP1-209ENST00000588915 CCDC24Q8N4L8 307 aa18.66■□□□□ 0.58
VMP1-209ENST00000588915 DICER1Q9UPY3 1922 aaKnown RBP18.65■□□□□ 0.58
VMP1-209ENST00000588915 KLRG2A4D1S0 409 aaPredicted RBP18.65■□□□□ 0.58
VMP1-209ENST00000588915 PRPF40BQ6NWY9 871 aaKnown RBP18.65■□□□□ 0.58
VMP1-209ENST00000588915 NBPF5PQ86XG9 351 aaPredicted RBP18.65■□□□□ 0.58
VMP1-209ENST00000588915 TIAM2Q8IVF5 1701 aa18.65■□□□□ 0.58
VMP1-209ENST00000588915 TAF7Q15545 349 aaPredicted RBP18.64■□□□□ 0.57
VMP1-209ENST00000588915 TPTE2Q6XPS3 522 aa18.64■□□□□ 0.57
VMP1-209ENST00000588915 BCORQ6W2J9 1755 aa18.63■□□□□ 0.57
VMP1-209ENST00000588915 NPR1P16066 1061 aa18.63■□□□□ 0.57
VMP1-209ENST00000588915 MCM10Q7L590 875 aa18.63■□□□□ 0.57
VMP1-209ENST00000588915 ZNF219Q9P2Y4 722 aaPredicted RBP18.63■□□□□ 0.57
VMP1-209ENST00000588915 COL11A2P13942 1736 aaPredicted RBP18.63■□□□□ 0.57
VMP1-209ENST00000588915 PRAMEF22A3QJZ6 481 aa18.62■□□□□ 0.57
VMP1-209ENST00000588915 C7orf43Q8WVR3 580 aa18.62■□□□□ 0.57
VMP1-209ENST00000588915 SLX4Q8IY92 1834 aa18.61■□□□□ 0.57
VMP1-209ENST00000588915 NBPF26B4DH59 902 aa18.6■□□□□ 0.57
VMP1-209ENST00000588915 ALDH1B1P30837 517 aa18.6■□□□□ 0.57
VMP1-209ENST00000588915 PIP4K2AP48426 406 aaPredicted RBP18.6■□□□□ 0.57
VMP1-209ENST00000588915 CCDC93Q567U6 631 aa18.6■□□□□ 0.57
VMP1-209ENST00000588915 CHADLQ6NUI6 762 aa18.6■□□□□ 0.57
VMP1-209ENST00000588915 NBPF10Q6P3W6 841 aaKnown RBP18.6■□□□□ 0.57
VMP1-209ENST00000588915 NBPF15Q8N660 670 aa18.6■□□□□ 0.57
VMP1-209ENST00000588915 PNISRQ8TF01 805 aaKnown RBP18.6■□□□□ 0.57
VMP1-209ENST00000588915 NIP7Q9Y221 180 aaKnown RBP eCLIP18.6■□□□□ 0.57
VMP1-209ENST00000588915 ARFGEF2Q9Y6D5 1785 aa18.6■□□□□ 0.57
VMP1-209ENST00000588915 IQCA1LA6NCM1 817 aa18.59■□□□□ 0.57
VMP1-209ENST00000588915 DDNO94850 711 aaPredicted RBP18.59■□□□□ 0.57
VMP1-209ENST00000588915 NEFMP07197 916 aa18.59■□□□□ 0.57
VMP1-209ENST00000588915 DCTN1Q14203 1278 aa18.59■□□□□ 0.57
VMP1-209ENST00000588915 COL13A1Q5TAT6 717 aaPredicted RBP18.58■□□□□ 0.56
VMP1-209ENST00000588915 RTKN2Q8IZC4 609 aa18.58■□□□□ 0.56
VMP1-209ENST00000588915 L3MBTL3Q96JM7 780 aaPredicted RBP18.58■□□□□ 0.56
VMP1-209ENST00000588915 ERVV-1B6SEH8 477 aa18.57■□□□□ 0.56
VMP1-209ENST00000588915 FKBP4Q02790 459 aaKnown RBP eCLIP18.57■□□□□ 0.56
VMP1-209ENST00000588915 CREBZFQ9NS37 354 aa18.57■□□□□ 0.56
VMP1-209ENST00000588915 PCNTO95613 3336 aa18.57■□□□□ 0.56
VMP1-209ENST00000588915 NYXQ9GZU5 481 aa18.55■□□□□ 0.56
VMP1-209ENST00000588915 GTF2E1P29083 439 aaPredicted RBP18.54■□□□□ 0.56
VMP1-209ENST00000588915 HLFQ16534 295 aa18.54■□□□□ 0.56
VMP1-209ENST00000588915 LDHDQ86WU2 507 aa18.54■□□□□ 0.56
VMP1-209ENST00000588915 PNNQ9H307 717 aaKnown RBP18.54■□□□□ 0.56
VMP1-209ENST00000588915 HSPA1AP0DMV8 641 aaKnown RBP18.53■□□□□ 0.56
VMP1-209ENST00000588915 HSPA1BP0DMV9 641 aaKnown RBP18.53■□□□□ 0.56
VMP1-209ENST00000588915 GRIPAP1Q4V328 841 aa18.53■□□□□ 0.56
VMP1-209ENST00000588915 CC2D2BQ6DHV5 1058 aa18.53■□□□□ 0.56
VMP1-209ENST00000588915 TAF1DQ9H5J8 278 aaPredicted RBP18.53■□□□□ 0.56
VMP1-209ENST00000588915 MIS18AQ9NYP9 233 aa18.53■□□□□ 0.56
VMP1-209ENST00000588915 SCN4AP35499 1836 aa18.53■□□□□ 0.56
VMP1-209ENST00000588915 CACNA1SQ13698 1873 aa18.52■□□□□ 0.56
VMP1-209ENST00000588915 EIF4A1P60842 406 aaKnown RBP18.52■□□□□ 0.56
VMP1-209ENST00000588915 CRY2Q49AN0 593 aa18.52■□□□□ 0.56
VMP1-209ENST00000588915 TNS4Q8IZW8 715 aa18.52■□□□□ 0.56
VMP1-209ENST00000588915 MAP3K15Q6ZN16 1313 aa18.51■□□□□ 0.55
VMP1-209ENST00000588915 POTEIP0CG38 1075 aa18.51■□□□□ 0.55
VMP1-209ENST00000588915 POTEJP0CG39 1038 aa18.51■□□□□ 0.55
VMP1-209ENST00000588915 PLEKHF1Q96S99 279 aa18.51■□□□□ 0.55
VMP1-209ENST00000588915 PSMD1Q99460 953 aa18.51■□□□□ 0.55
VMP1-209ENST00000588915 ZNF277Q9NRM2 450 aaPredicted RBP18.51■□□□□ 0.55
VMP1-209ENST00000588915 PASKQ96RG2 1323 aa18.5■□□□□ 0.55
VMP1-209ENST00000588915 FAM177BA6PVY3 158 aa18.5■□□□□ 0.55
VMP1-209ENST00000588915 FZD9O00144 591 aa18.5■□□□□ 0.55
VMP1-209ENST00000588915 IARSP41252 1262 aaKnown RBP18.5■□□□□ 0.55
VMP1-209ENST00000588915 NFE2L2Q16236 605 aa18.5■□□□□ 0.55
VMP1-209ENST00000588915 KIF6Q6ZMV9 814 aa18.5■□□□□ 0.55
VMP1-209ENST00000588915 SYNE4Q8N205 404 aa18.5■□□□□ 0.55
VMP1-209ENST00000588915 HACL1Q9UJ83 578 aa18.5■□□□□ 0.55
VMP1-209ENST00000588915 IBTKQ9P2D0 1353 aaPredicted RBP18.5■□□□□ 0.55
VMP1-209ENST00000588915 LAMB4A4D0S4 1761 aa18.5■□□□□ 0.55
VMP1-209ENST00000588915 ERBB4Q15303 1308 aa18.49■□□□□ 0.55
VMP1-209ENST00000588915 HOXA10P31260 410 aaPredicted RBP18.49■□□□□ 0.55
VMP1-209ENST00000588915 PNMA8AQ86V59 439 aaPredicted RBP18.49■□□□□ 0.55
VMP1-209ENST00000588915 RIC1Q4ADV7 1423 aa18.49■□□□□ 0.55
VMP1-209ENST00000588915 ITGBL1O95965 494 aaPredicted RBP18.48■□□□□ 0.55
VMP1-209ENST00000588915 JDP2Q8WYK2 163 aa18.48■□□□□ 0.55
VMP1-209ENST00000588915 RRP7AQ9Y3A4 280 aaKnown RBP18.48■□□□□ 0.55
VMP1-209ENST00000588915 OLFM4Q6UX06 510 aa18.47■□□□□ 0.55
VMP1-209ENST00000588915 TTLL7Q6ZT98 887 aa18.47■□□□□ 0.55
VMP1-209ENST00000588915 GPC2Q8N158 579 aa18.47■□□□□ 0.55
VMP1-209ENST00000588915 NGEFQ8N5V2 710 aa18.47■□□□□ 0.55
VMP1-209ENST00000588915 KDM3BQ7LBC6 1761 aa18.47■□□□□ 0.55
VMP1-209ENST00000588915 SNED1Q8TER0 1413 aa18.47■□□□□ 0.55
VMP1-209ENST00000588915 ZNF541Q9H0D2 1346 aa18.47■□□□□ 0.55
VMP1-209ENST00000588915 CNTNAP1P78357 1384 aa18.46■□□□□ 0.55
VMP1-209ENST00000588915 EPHX2P34913 555 aa18.46■□□□□ 0.55
VMP1-209ENST00000588915 NUTM1Q86Y26 1132 aa18.46■□□□□ 0.55
VMP1-209ENST00000588915 ZNF34Q8IZ26 560 aa18.46■□□□□ 0.55
VMP1-209ENST00000588915 RPGRQ92834 1020 aaKnown RBP18.46■□□□□ 0.55
VMP1-209ENST00000588915 CRAMP1Q96RY5 1269 aa18.46■□□□□ 0.55
VMP1-209ENST00000588915 BABAM1Q9NWV8 329 aa18.46■□□□□ 0.55
VMP1-209ENST00000588915 MKRN1Q9UHC7 482 aaKnown RBP18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms