RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 MYD88Q99836 296 aa17.48■□□□□ 0.39
LIG3-205ENST00000585941 SPATA31A1Q5TZJ5 1347 aa17.48■□□□□ 0.39
LIG3-205ENST00000585941 PTCD1O75127 700 aaKnown RBP17.47■□□□□ 0.39
LIG3-205ENST00000585941 BCL9O00512 1426 aa17.46■□□□□ 0.39
LIG3-205ENST00000585941 PIP4K2BP78356 416 aa17.46■□□□□ 0.39
LIG3-205ENST00000585941 RHPN1Q8TCX5 695 aa17.46■□□□□ 0.39
LIG3-205ENST00000585941 PIGBQ92521 554 aa17.46■□□□□ 0.39
LIG3-205ENST00000585941 TUBGCP6Q96RT7 1819 aa17.46■□□□□ 0.39
LIG3-205ENST00000585941 NUP188Q5SRE5 1749 aa17.46■□□□□ 0.39
LIG3-205ENST00000585941 NBPF26B4DH59 902 aa17.45■□□□□ 0.38
LIG3-205ENST00000585941 SDSP20132 328 aa17.45■□□□□ 0.38
LIG3-205ENST00000585941 NBPF14Q5TI25 921 aa17.45■□□□□ 0.38
LIG3-205ENST00000585941 NBPF10Q6P3W6 841 aaKnown RBP17.45■□□□□ 0.38
LIG3-205ENST00000585941 NBPF15Q8N660 670 aa17.45■□□□□ 0.38
LIG3-205ENST00000585941 SLIT2O94813 1529 aa17.45■□□□□ 0.38
LIG3-205ENST00000585941 STARD3NLO95772 234 aa17.45■□□□□ 0.38
LIG3-205ENST00000585941 SUCLG2Q96I99 432 aa17.45■□□□□ 0.38
LIG3-205ENST00000585941 SPATA31A5Q5VU36 1347 aa17.44■□□□□ 0.38
LIG3-205ENST00000585941 SPATA31A7Q8IWB4 1347 aa17.44■□□□□ 0.38
LIG3-205ENST00000585941 UBAP1LF5GYI3 381 aa17.44■□□□□ 0.38
LIG3-205ENST00000585941 OS9Q13438 667 aaPredicted RBP17.44■□□□□ 0.38
LIG3-205ENST00000585941 BCL11AQ9H165 835 aa17.44■□□□□ 0.38
LIG3-205ENST00000585941 ATG3Q9NT62 314 aa17.44■□□□□ 0.38
LIG3-205ENST00000585941 A1BGP04217 495 aa17.43■□□□□ 0.38
LIG3-205ENST00000585941 BARGINQ6ZT62 677 aa17.43■□□□□ 0.38
LIG3-205ENST00000585941 BICC1Q9H694 974 aaKnown RBP17.43■□□□□ 0.38
LIG3-205ENST00000585941 NUTM2BA6NNL0 878 aaPredicted RBP17.42■□□□□ 0.38
LIG3-205ENST00000585941 NUTM2EB1AL46 878 aaPredicted RBP17.42■□□□□ 0.38
LIG3-205ENST00000585941 DDB1Q16531 1140 aa17.42■□□□□ 0.38
LIG3-205ENST00000585941 NUTM2AQ8IVF1 878 aaPredicted RBP17.42■□□□□ 0.38
LIG3-205ENST00000585941 KAZALD1Q96I82 304 aa17.42■□□□□ 0.38
LIG3-205ENST00000585941 ASAP1Q9ULH1 1129 aa17.42■□□□□ 0.38
LIG3-205ENST00000585941 KAT6BQ8WYB5 2073 aa17.42■□□□□ 0.38
LIG3-205ENST00000585941 JCADQ9P266 1359 aa17.42■□□□□ 0.38
LIG3-205ENST00000585941 PIP4K2AP48426 406 aaPredicted RBP17.42■□□□□ 0.38
LIG3-205ENST00000585941 CLASRPQ8N2M8 674 aaKnown RBP17.41■□□□□ 0.38
LIG3-205ENST00000585941 IL1RAPL2Q9NP60 686 aa17.41■□□□□ 0.38
LIG3-205ENST00000585941 DOT1LQ8TEK3 1739 aa17.41■□□□□ 0.38
LIG3-205ENST00000585941 USP42Q9H9J4 1324 aaKnown RBP17.4■□□□□ 0.38
LIG3-205ENST00000585941 REC8O95072 547 aa17.4■□□□□ 0.38
LIG3-205ENST00000585941 G3BP1Q13283 466 aaKnown RBP eCLIP17.4■□□□□ 0.38
LIG3-205ENST00000585941 CCDC191Q8NCU4 936 aa17.4■□□□□ 0.38
LIG3-205ENST00000585941 CWC25Q9NXE8 425 aaPredicted RBP17.4■□□□□ 0.38
LIG3-205ENST00000585941 TTC41PQ6P2S7 1318 aa17.4■□□□□ 0.38
LIG3-205ENST00000585941 A0A087WZG4 1122 aa17.39■□□□□ 0.37
LIG3-205ENST00000585941 RABL6Q3YEC7 729 aaPredicted RBP17.39■□□□□ 0.37
LIG3-205ENST00000585941 GPATCH3Q96I76 525 aa17.39■□□□□ 0.37
LIG3-205ENST00000585941 TTLL7Q6ZT98 887 aa17.39■□□□□ 0.37
LIG3-205ENST00000585941 RBM42Q9BTD8 480 aaKnown RBP17.39■□□□□ 0.37
LIG3-205ENST00000585941 AK9Q5TCS8 1911 aa17.38■□□□□ 0.37
LIG3-205ENST00000585941 H7C1W4 665 aa17.38■□□□□ 0.37
LIG3-205ENST00000585941 ERC2O15083 957 aa17.38■□□□□ 0.37
LIG3-205ENST00000585941 SLC4A3P48751 1232 aa17.38■□□□□ 0.37
LIG3-205ENST00000585941 KIF6Q6ZMV9 814 aa17.38■□□□□ 0.37
LIG3-205ENST00000585941 UBE3BQ7Z3V4 1068 aa17.38■□□□□ 0.37
LIG3-205ENST00000585941 UNC5CLQ8IV45 518 aa17.38■□□□□ 0.37
LIG3-205ENST00000585941 DNAJC10Q8IXB1 793 aa17.38■□□□□ 0.37
LIG3-205ENST00000585941 ATP5J2-PTCD1G3V325 749 aa17.37■□□□□ 0.37
LIG3-205ENST00000585941 CASP7P55210 303 aa17.37■□□□□ 0.37
LIG3-205ENST00000585941 COPRSQ9NQ92 184 aa17.37■□□□□ 0.37
LIG3-205ENST00000585941 PRIM1P49642 420 aaKnown RBP17.36■□□□□ 0.37
LIG3-205ENST00000585941 TRIM28Q13263 835 aaKnown RBP17.36■□□□□ 0.37
LIG3-205ENST00000585941 NUTM1Q86Y26 1132 aa17.36■□□□□ 0.37
LIG3-205ENST00000585941 SNX21Q969T3 373 aa17.36■□□□□ 0.37
LIG3-205ENST00000585941 TBC1D2Q9BYX2 928 aa17.36■□□□□ 0.37
LIG3-205ENST00000585941 CCDC9Q9Y3X0 531 aaKnown RBP17.36■□□□□ 0.37
LIG3-205ENST00000585941 TJP1Q07157 1748 aa17.36■□□□□ 0.37
LIG3-205ENST00000585941 TRIM6-TRIM34B2RNG4 842 aa17.36■□□□□ 0.37
LIG3-205ENST00000585941 GLRX3O76003 335 aaKnown RBP17.36■□□□□ 0.37
LIG3-205ENST00000585941 IFIT2P09913 472 aaKnown RBP17.36■□□□□ 0.37
LIG3-205ENST00000585941 SYTL4Q96C24 671 aaPredicted RBP17.36■□□□□ 0.37
LIG3-205ENST00000585941 PA2G4Q9UQ80 394 aaKnown RBP17.36■□□□□ 0.37
LIG3-205ENST00000585941 SPATA31A6Q5VVP1 1343 aa17.35■□□□□ 0.37
LIG3-205ENST00000585941 CYP19A1P11511 503 aaPredicted RBP17.35■□□□□ 0.37
LIG3-205ENST00000585941 TCIRG1Q13488 830 aa17.35■□□□□ 0.37
LIG3-205ENST00000585941 HSCBQ8IWL3 235 aa17.35■□□□□ 0.37
LIG3-205ENST00000585941 PI4K2BQ8TCG2 481 aa17.35■□□□□ 0.37
LIG3-205ENST00000585941 ISCA1Q9BUE6 129 aa17.35■□□□□ 0.37
LIG3-205ENST00000585941 USP26Q9BXU7 913 aa17.35■□□□□ 0.37
LIG3-205ENST00000585941 ZBTB3Q9H5J0 574 aa17.35■□□□□ 0.37
LIG3-205ENST00000585941 CICQ96RK0 1608 aaPredicted RBP17.34■□□□□ 0.37
LIG3-205ENST00000585941 EPB41L2O43491 1005 aaKnown RBP17.34■□□□□ 0.37
LIG3-205ENST00000585941 VPS72Q15906 364 aa17.34■□□□□ 0.37
LIG3-205ENST00000585941 HSP90AB3PQ58FF7 597 aa17.34■□□□□ 0.37
LIG3-205ENST00000585941 EPHA10Q5JZY3 1008 aa17.34■□□□□ 0.37
LIG3-205ENST00000585941 RILPL2Q969X0 211 aa17.34■□□□□ 0.37
LIG3-205ENST00000585941 TSHZ3Q63HK5 1081 aa17.33■□□□□ 0.37
LIG3-205ENST00000585941 CNTROBQ8N137 903 aa17.33■□□□□ 0.37
LIG3-205ENST00000585941 NGLY1Q96IV0 654 aa17.33■□□□□ 0.37
LIG3-205ENST00000585941 ECHDC1Q9NTX5 307 aa17.33■□□□□ 0.37
LIG3-205ENST00000585941 MAP3K15Q6ZN16 1313 aa17.33■□□□□ 0.36
LIG3-205ENST00000585941 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.33■□□□□ 0.36
LIG3-205ENST00000585941 SASH1O94885 1247 aa17.32■□□□□ 0.36
LIG3-205ENST00000585941 CHMLP26374 656 aa17.32■□□□□ 0.36
LIG3-205ENST00000585941 MARCH10Q8NA82 808 aaPredicted RBP17.32■□□□□ 0.36
LIG3-205ENST00000585941 ESYT1Q9BSJ8 1104 aa17.32■□□□□ 0.36
LIG3-205ENST00000585941 IL6STP40189 918 aaPredicted RBP17.32■□□□□ 0.36
LIG3-205ENST00000585941 RFX5P48382 616 aaPredicted RBP17.32■□□□□ 0.36
LIG3-205ENST00000585941 FNBP4Q8N3X1 1017 aaPredicted RBP17.32■□□□□ 0.36
LIG3-205ENST00000585941 BCL9LQ86UU0 1499 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms