RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 ZPR1O75312 459 aa13.96□□□□□ -0.17
TOP3A-216ENST00000583804 DDX58O95786 925 aaKnown RBP13.96□□□□□ -0.17
TOP3A-216ENST00000583804 FKBP5Q13451 457 aaPredicted RBP13.96□□□□□ -0.17
TOP3A-216ENST00000583804 R3HDM1Q15032 1099 aaKnown RBP13.96□□□□□ -0.17
TOP3A-216ENST00000583804 NOB1Q9ULX3 412 aaKnown RBP13.96□□□□□ -0.17
TOP3A-216ENST00000583804 C20orf194Q5TEA3 1177 aa13.95□□□□□ -0.18
TOP3A-216ENST00000583804 ANKRD13DQ6ZTN6 518 aa13.95□□□□□ -0.18
TOP3A-216ENST00000583804 RIC3Q7Z5B4 369 aa13.95□□□□□ -0.18
TOP3A-216ENST00000583804 ZBTB3Q9H5J0 574 aa13.95□□□□□ -0.18
TOP3A-216ENST00000583804 SRP68Q9UHB9 627 aaKnown RBP13.95□□□□□ -0.18
TOP3A-216ENST00000583804 PNPLA7Q6ZV29 1317 aa13.95□□□□□ -0.18
TOP3A-216ENST00000583804 PSDA5PKW4 1024 aaPredicted RBP13.94□□□□□ -0.18
TOP3A-216ENST00000583804 NARFQ9UHQ1 456 aa13.94□□□□□ -0.18
TOP3A-216ENST00000583804 IPO8O15397 1037 aaKnown RBP13.93□□□□□ -0.18
TOP3A-216ENST00000583804 BRPF1P55201 1214 aaPredicted RBP13.93□□□□□ -0.18
TOP3A-216ENST00000583804 USPL1Q5W0Q7 1092 aa13.93□□□□□ -0.18
TOP3A-216ENST00000583804 MAP3K15Q6ZN16 1313 aa13.93□□□□□ -0.18
TOP3A-216ENST00000583804 KIF16BQ96L93 1317 aa13.93□□□□□ -0.18
TOP3A-216ENST00000583804 UBR3Q6ZT12 1888 aa13.93□□□□□ -0.18
TOP3A-216ENST00000583804 PI4KAP2A4QPH2 592 aa13.93□□□□□ -0.18
TOP3A-216ENST00000583804 CAMTA2O94983 1202 aa13.93□□□□□ -0.18
TOP3A-216ENST00000583804 HLFQ16534 295 aa13.93□□□□□ -0.18
TOP3A-216ENST00000583804 KSR2Q6VAB6 950 aa13.93□□□□□ -0.18
TOP3A-216ENST00000583804 PI4KAP1Q8N8J0 262 aa13.93□□□□□ -0.18
TOP3A-216ENST00000583804 PLBD2Q8NHP8 589 aa13.93□□□□□ -0.18
TOP3A-216ENST00000583804 CLUAP1Q96AJ1 413 aa13.93□□□□□ -0.18
TOP3A-216ENST00000583804 PDGFDQ9GZP0 370 aaPredicted RBP13.93□□□□□ -0.18
TOP3A-216ENST00000583804 MAP3K2Q9Y2U5 619 aa13.93□□□□□ -0.18
TOP3A-216ENST00000583804 PTPRCP08575 1304 aa13.92□□□□□ -0.18
TOP3A-216ENST00000583804 USP42Q9H9J4 1324 aaKnown RBP13.92□□□□□ -0.18
TOP3A-216ENST00000583804 ERVV-1B6SEH8 477 aa13.92□□□□□ -0.18
TOP3A-216ENST00000583804 F6X3S4 739 aa13.92□□□□□ -0.18
TOP3A-216ENST00000583804 ZNF652Q9Y2D9 606 aa13.92□□□□□ -0.18
TOP3A-216ENST00000583804 ZKSCAN2Q63HK3 967 aa13.91□□□□□ -0.18
TOP3A-216ENST00000583804 SLC4A10Q6U841 1118 aa13.91□□□□□ -0.18
TOP3A-216ENST00000583804 PANK1Q8TE04 598 aa13.91□□□□□ -0.18
TOP3A-216ENST00000583804 API5Q9BZZ5 524 aaKnown RBP13.91□□□□□ -0.18
TOP3A-216ENST00000583804 RNF123Q5XPI4 1314 aa13.91□□□□□ -0.18
TOP3A-216ENST00000583804 GYS1P13807 737 aa13.9□□□□□ -0.18
TOP3A-216ENST00000583804 MSL1Q68DK7 614 aa13.9□□□□□ -0.18
TOP3A-216ENST00000583804 ATF7IPQ6VMQ6 1270 aa13.9□□□□□ -0.18
TOP3A-216ENST00000583804 GIGYF2Q6Y7W6 1299 aaKnown RBP13.9□□□□□ -0.18
TOP3A-216ENST00000583804 BICDL1Q6ZP65 573 aa13.9□□□□□ -0.18
TOP3A-216ENST00000583804 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.9□□□□□ -0.18
TOP3A-216ENST00000583804 DNAAF4Q8WXU2 420 aa13.9□□□□□ -0.18
TOP3A-216ENST00000583804 ARHGAP45Q92619 1136 aa13.9□□□□□ -0.18
TOP3A-216ENST00000583804 CRBNQ96SW2 442 aa13.9□□□□□ -0.18
TOP3A-216ENST00000583804 BCL2L12Q9HB09 334 aa13.9□□□□□ -0.18
TOP3A-216ENST00000583804 ADCY9O60503 1353 aa13.9□□□□□ -0.18
TOP3A-216ENST00000583804 TUBGCP6Q96RT7 1819 aa13.9□□□□□ -0.18
TOP3A-216ENST00000583804 GPTP24298 496 aa13.89□□□□□ -0.19
TOP3A-216ENST00000583804 NEXNQ0ZGT2 675 aa13.89□□□□□ -0.19
TOP3A-216ENST00000583804 HSP90AB3PQ58FF7 597 aa13.89□□□□□ -0.19
TOP3A-216ENST00000583804 CLEC4GQ6UXB4 293 aa13.89□□□□□ -0.19
TOP3A-216ENST00000583804 MYD88Q99836 296 aa13.89□□□□□ -0.19
TOP3A-216ENST00000583804 METTL22Q9BUU2 404 aaPredicted RBP13.89□□□□□ -0.19
TOP3A-216ENST00000583804 CACNA1FO60840 1977 aa13.89□□□□□ -0.19
TOP3A-216ENST00000583804 ATP5J2-PTCD1G3V325 749 aa13.88□□□□□ -0.19
TOP3A-216ENST00000583804 ZBTB7AO95365 584 aa13.88□□□□□ -0.19
TOP3A-216ENST00000583804 TRIM27P14373 513 aa13.88□□□□□ -0.19
TOP3A-216ENST00000583804 TCIRG1Q13488 830 aa13.88□□□□□ -0.19
TOP3A-216ENST00000583804 NLGN1Q8N2Q7 840 aa13.88□□□□□ -0.19
TOP3A-216ENST00000583804 SLC16A10Q8TF71 515 aa13.88□□□□□ -0.19
TOP3A-216ENST00000583804 NIP7Q9Y221 180 aaKnown RBP eCLIP13.88□□□□□ -0.19
TOP3A-216ENST00000583804 RLBP1P12271 317 aa13.87□□□□□ -0.19
TOP3A-216ENST00000583804 TBC1D9BQ66K14 1250 aa13.87□□□□□ -0.19
TOP3A-216ENST00000583804 FTSJ3Q8IY81 847 aaKnown RBP13.87□□□□□ -0.19
TOP3A-216ENST00000583804 EXOC6Q8TAG9 804 aa13.87□□□□□ -0.19
TOP3A-216ENST00000583804 SETDB2Q96T68 719 aa13.87□□□□□ -0.19
TOP3A-216ENST00000583804 C4AP0C0L4 1744 aa13.87□□□□□ -0.19
TOP3A-216ENST00000583804 FAM177BA6PVY3 158 aa13.87□□□□□ -0.19
TOP3A-216ENST00000583804 RGL2O15211 777 aa13.87□□□□□ -0.19
TOP3A-216ENST00000583804 ATF5Q9Y2D1 282 aaPredicted RBP13.87□□□□□ -0.19
TOP3A-216ENST00000583804 COG6Q9Y2V7 657 aa13.87□□□□□ -0.19
TOP3A-216ENST00000583804 QSER1Q2KHR3 1735 aa13.86□□□□□ -0.19
TOP3A-216ENST00000583804 MS4A1P11836 297 aa13.86□□□□□ -0.19
TOP3A-216ENST00000583804 NFIXQ14938 502 aa13.86□□□□□ -0.19
TOP3A-216ENST00000583804 DZIP1LQ8IYY4 767 aaKnown RBP13.86□□□□□ -0.19
TOP3A-216ENST00000583804 ZNF34Q8IZ26 560 aa13.86□□□□□ -0.19
TOP3A-216ENST00000583804 SRCAPQ6ZRS2 3230 aa13.85□□□□□ -0.19
TOP3A-216ENST00000583804 IGKV5-2P06315 115 aa13.85□□□□□ -0.19
TOP3A-216ENST00000583804 MMP10P09238 476 aa13.85□□□□□ -0.19
TOP3A-216ENST00000583804 CWF19L2Q2TBE0 894 aaKnown RBP13.85□□□□□ -0.19
TOP3A-216ENST00000583804 BEND3Q5T5X7 828 aa13.85□□□□□ -0.19
TOP3A-216ENST00000583804 LINS1Q8NG48 757 aa13.85□□□□□ -0.19
TOP3A-216ENST00000583804 ISCA1Q9BUE6 129 aa13.85□□□□□ -0.19
TOP3A-216ENST00000583804 SRCIN1Q9C0H9 1055 aa13.85□□□□□ -0.19
TOP3A-216ENST00000583804 MTFR1LQ9H019 292 aa13.85□□□□□ -0.19
TOP3A-216ENST00000583804 TM4SF1P30408 202 aa13.84□□□□□ -0.19
TOP3A-216ENST00000583804 CCT4P50991 539 aaKnown RBP13.84□□□□□ -0.19
TOP3A-216ENST00000583804 NLRP10Q86W26 655 aa13.84□□□□□ -0.19
TOP3A-216ENST00000583804 SCN7AQ01118 1682 aa13.84□□□□□ -0.19
TOP3A-216ENST00000583804 ABCC4O15439 1325 aa13.83□□□□□ -0.2
TOP3A-216ENST00000583804 NEURL1BA8MQ27 555 aa13.83□□□□□ -0.2
TOP3A-216ENST00000583804 NPHP1O15259 732 aa13.83□□□□□ -0.2
TOP3A-216ENST00000583804 TRIM28Q13263 835 aaKnown RBP13.83□□□□□ -0.2
TOP3A-216ENST00000583804 PARP10Q53GL7 1025 aa13.83□□□□□ -0.2
TOP3A-216ENST00000583804 SUSD4Q5VX71 490 aa13.83□□□□□ -0.2
TOP3A-216ENST00000583804 ITPRIPQ8IWB1 547 aa13.83□□□□□ -0.2
TOP3A-216ENST00000583804 TMEM57Q8N5G2 664 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms