RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 BICDL1Q6ZP65 573 aa8.48□□□□□ -1.05
SMCHD1-209ENST00000583441 ZDHHC3Q9NYG2 299 aa8.48□□□□□ -1.05
SMCHD1-209ENST00000583441 SLC51AQ86UW1 340 aa8.47□□□□□ -1.05
SMCHD1-209ENST00000583441 CCDC85AQ96PX6 553 aaPredicted RBP8.47□□□□□ -1.05
SMCHD1-209ENST00000583441 OAS3Q9Y6K5 1087 aaKnown RBP8.47□□□□□ -1.05
SMCHD1-209ENST00000583441 USP4Q13107 963 aa8.46□□□□□ -1.06
SMCHD1-209ENST00000583441 NEUROD1Q13562 356 aa8.46□□□□□ -1.06
SMCHD1-209ENST00000583441 GP2P55259 537 aaKnown RBP8.45□□□□□ -1.06
SMCHD1-209ENST00000583441 RFC5P40937 340 aa8.44□□□□□ -1.06
SMCHD1-209ENST00000583441 CD97P48960 835 aa8.44□□□□□ -1.06
SMCHD1-209ENST00000583441 WFDC12Q8WWY7 111 aa8.44□□□□□ -1.06
SMCHD1-209ENST00000583441 IREB2P48200 963 aaKnown RBP8.43□□□□□ -1.06
SMCHD1-209ENST00000583441 JAG1P78504 1218 aa8.43□□□□□ -1.06
SMCHD1-209ENST00000583441 PRR23CQ6ZRP0 262 aa8.43□□□□□ -1.06
SMCHD1-209ENST00000583441 SLC30A3Q99726 388 aa8.43□□□□□ -1.06
SMCHD1-209ENST00000583441 SMTNP53814 917 aa8.42□□□□□ -1.06
SMCHD1-209ENST00000583441 INHAP05111 366 aa8.41□□□□□ -1.06
SMCHD1-209ENST00000583441 FSTP19883 344 aa8.41□□□□□ -1.06
SMCHD1-209ENST00000583441 GDF10P55107 478 aa8.41□□□□□ -1.06
SMCHD1-209ENST00000583441 FMR1NBQ8N0W7 255 aaPredicted RBP8.41□□□□□ -1.06
SMCHD1-209ENST00000583441 JPH1Q9HDC5 661 aaPredicted RBP8.41□□□□□ -1.06
SMCHD1-209ENST00000583441 CEP126Q9P2H0 1117 aa8.41□□□□□ -1.06
SMCHD1-209ENST00000583441 NEUROD4Q9HD90 331 aa8.4□□□□□ -1.06
SMCHD1-209ENST00000583441 CABP1Q9NZU7 370 aa8.4□□□□□ -1.06
SMCHD1-209ENST00000583441 NOS3P29474 1203 aa8.39□□□□□ -1.07
SMCHD1-209ENST00000583441 SPEM2Q0P670 501 aa8.39□□□□□ -1.07
SMCHD1-209ENST00000583441 SFSWAPQ12872 951 aaKnown RBP8.39□□□□□ -1.07
SMCHD1-209ENST00000583441 DMRTC2Q8IXT2 367 aaPredicted RBP8.39□□□□□ -1.07
SMCHD1-209ENST00000583441 DOLKQ9UPQ8 538 aa8.39□□□□□ -1.07
SMCHD1-209ENST00000583441 LRRC69Q6ZNQ3 347 aa8.38□□□□□ -1.07
SMCHD1-209ENST00000583441 RAB44Q7Z6P3 723 aaPredicted RBP8.38□□□□□ -1.07
SMCHD1-209ENST00000583441 NUDT8Q8WV74 236 aa8.38□□□□□ -1.07
SMCHD1-209ENST00000583441 SIRT1Q96EB6 747 aa8.38□□□□□ -1.07
SMCHD1-209ENST00000583441 GJD4Q96KN9 370 aaPredicted RBP8.38□□□□□ -1.07
SMCHD1-209ENST00000583441 SCNN1DP51172 638 aa8.37□□□□□ -1.07
SMCHD1-209ENST00000583441 TMEM259Q4ZIN3 620 aa8.37□□□□□ -1.07
SMCHD1-209ENST00000583441 CDK2AP1O14519 115 aa8.36□□□□□ -1.07
SMCHD1-209ENST00000583441 TBC1D8BQ0IIM8 1120 aa8.36□□□□□ -1.07
SMCHD1-209ENST00000583441 MEGF10Q96KG7 1140 aa8.36□□□□□ -1.07
SMCHD1-209ENST00000583441 KRTAP4-11Q9BYQ6 195 aa8.36□□□□□ -1.07
SMCHD1-209ENST00000583441 SERTAD1Q9UHV2 236 aa8.36□□□□□ -1.07
SMCHD1-209ENST00000583441 MED26O95402 600 aa8.35□□□□□ -1.07
SMCHD1-209ENST00000583441 TSGA10IPQ3SY00 556 aa8.35□□□□□ -1.07
SMCHD1-209ENST00000583441 OXLD1Q5BKU9 147 aa8.35□□□□□ -1.07
SMCHD1-209ENST00000583441 ZNF295-AS1Q8N0V1 137 aa8.35□□□□□ -1.07
SMCHD1-209ENST00000583441 PARP3Q9Y6F1 533 aa8.35□□□□□ -1.07
SMCHD1-209ENST00000583441 KIAA1324LA8MWY0 1029 aaPredicted RBP8.34□□□□□ -1.07
SMCHD1-209ENST00000583441 PTCD1O75127 700 aaKnown RBP8.34□□□□□ -1.07
SMCHD1-209ENST00000583441 SLC24A3Q9HC58 644 aa8.34□□□□□ -1.07
SMCHD1-209ENST00000583441 TXLNAP40222 546 aa8.33□□□□□ -1.08
SMCHD1-209ENST00000583441 AFF1P51825 1210 aaKnown RBP8.33□□□□□ -1.08
SMCHD1-209ENST00000583441 DDRGK1Q96HY6 314 aa8.33□□□□□ -1.08
SMCHD1-209ENST00000583441 UBE2OQ9C0C9 1292 aaKnown RBP8.33□□□□□ -1.08
SMCHD1-209ENST00000583441 IGFLR1Q9H665 355 aa8.33□□□□□ -1.08
SMCHD1-209ENST00000583441 IQSEC3Q9UPP2 1182 aaPredicted RBP8.33□□□□□ -1.08
SMCHD1-209ENST00000583441 A6NJY4 79 aa8.32□□□□□ -1.08
SMCHD1-209ENST00000583441 FBXO11Q86XK2 927 aa8.31□□□□□ -1.08
SMCHD1-209ENST00000583441 SLC6A14Q9UN76 642 aa8.31□□□□□ -1.08
SMCHD1-209ENST00000583441 USP3Q9Y6I4 520 aa8.31□□□□□ -1.08
SMCHD1-209ENST00000583441 MTFR1Q15390 333 aa8.3□□□□□ -1.08
SMCHD1-209ENST00000583441 IGF2-ASQ6U949 168 aa8.3□□□□□ -1.08
SMCHD1-209ENST00000583441 DTWD1Q8N5C7 304 aa8.3□□□□□ -1.08
SMCHD1-209ENST00000583441 BHMTQ93088 406 aa8.3□□□□□ -1.08
SMCHD1-209ENST00000583441 RGS9O75916 674 aaPredicted RBP8.29□□□□□ -1.08
SMCHD1-209ENST00000583441 PSAPL1Q6NUJ1 521 aa8.29□□□□□ -1.08
SMCHD1-209ENST00000583441 SLC4A9Q96Q91 983 aa8.29□□□□□ -1.08
SMCHD1-209ENST00000583441 GSC2O15499 205 aa8.28□□□□□ -1.08
SMCHD1-209ENST00000583441 TGFB1P01137 390 aa8.28□□□□□ -1.08
SMCHD1-209ENST00000583441 SLFNL1Q499Z3 407 aa8.28□□□□□ -1.08
SMCHD1-209ENST00000583441 TPRNQ4KMQ1 711 aa8.28□□□□□ -1.08
SMCHD1-209ENST00000583441 ILDR2Q71H61 639 aa8.28□□□□□ -1.08
SMCHD1-209ENST00000583441 KRTAP4-5Q9BYR2 181 aa8.28□□□□□ -1.08
SMCHD1-209ENST00000583441 MSL1Q68DK7 614 aa8.27□□□□□ -1.09
SMCHD1-209ENST00000583441 FAM117AQ9C073 453 aa8.27□□□□□ -1.09
SMCHD1-209ENST00000583441 BRD7Q9NPI1 651 aa8.27□□□□□ -1.09
SMCHD1-209ENST00000583441 KCNH4Q9UQ05 1017 aa8.27□□□□□ -1.09
SMCHD1-209ENST00000583441 GPC6Q9Y625 555 aaPredicted RBP8.27□□□□□ -1.09
SMCHD1-209ENST00000583441 GRIK1P39086 918 aa8.26□□□□□ -1.09
SMCHD1-209ENST00000583441 OGFOD2Q6N063 350 aa8.26□□□□□ -1.09
SMCHD1-209ENST00000583441 DZIP1LQ8IYY4 767 aaKnown RBP8.26□□□□□ -1.09
SMCHD1-209ENST00000583441 PHTF2Q8N3S3 785 aa8.26□□□□□ -1.09
SMCHD1-209ENST00000583441 CEP63Q96MT8 703 aa8.26□□□□□ -1.09
SMCHD1-209ENST00000583441 EML1O00423 815 aa8.25□□□□□ -1.09
SMCHD1-209ENST00000583441 ADAMTS4O75173 837 aa8.25□□□□□ -1.09
SMCHD1-209ENST00000583441 IGLV1-40P01703 118 aa8.25□□□□□ -1.09
SMCHD1-209ENST00000583441 L3MBTL2Q969R5 705 aa8.25□□□□□ -1.09
SMCHD1-209ENST00000583441 TMEM229AB2RXF0 380 aa8.24□□□□□ -1.09
SMCHD1-209ENST00000583441 WNT11O96014 354 aa8.24□□□□□ -1.09
SMCHD1-209ENST00000583441 C8AP07357 584 aa8.24□□□□□ -1.09
SMCHD1-209ENST00000583441 LCE4AQ5TA78 99 aa8.24□□□□□ -1.09
SMCHD1-209ENST00000583441 INTS5Q6P9B9 1019 aaKnown RBP8.24□□□□□ -1.09
SMCHD1-209ENST00000583441 AKTIPQ9H8T0 292 aa8.24□□□□□ -1.09
SMCHD1-209ENST00000583441 PRKCSHP14314 528 aaPredicted RBP8.23□□□□□ -1.09
SMCHD1-209ENST00000583441 KCNQ4P56696 695 aa8.23□□□□□ -1.09
SMCHD1-209ENST00000583441 ZDHHC1Q8WTX9 485 aa8.23□□□□□ -1.09
SMCHD1-209ENST00000583441 RAXQ9Y2V3 346 aa8.23□□□□□ -1.09
SMCHD1-209ENST00000583441 SPINK2P20155 84 aa8.22□□□□□ -1.09
SMCHD1-209ENST00000583441 NOS2P35228 1153 aa8.22□□□□□ -1.09
SMCHD1-209ENST00000583441 RHPN1Q8TCX5 695 aa8.22□□□□□ -1.09
SMCHD1-209ENST00000583441 DNAJB12Q9NXW2 375 aaKnown RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms