RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 TSEN2Q8NCE0 465 aaKnown RBP9.15□□□□□ -0.94
SMCHD1-208ENST00000583344 PALM3A6NDB9 673 aaPredicted RBP9.14□□□□□ -0.95
SMCHD1-208ENST00000583344 DKK1O94907 266 aa9.14□□□□□ -0.95
SMCHD1-208ENST00000583344 RHPN1Q8TCX5 695 aa9.14□□□□□ -0.95
SMCHD1-208ENST00000583344 C7orf43Q8WVR3 580 aa9.14□□□□□ -0.95
SMCHD1-208ENST00000583344 SPOCK3Q9BQ16 436 aa9.14□□□□□ -0.95
SMCHD1-208ENST00000583344 MARK1Q9P0L2 795 aa9.14□□□□□ -0.95
SMCHD1-208ENST00000583344 TFIP11Q9UBB9 837 aaKnown RBP9.14□□□□□ -0.95
SMCHD1-208ENST00000583344 KRBA1A5PL33 1030 aa9.13□□□□□ -0.95
SMCHD1-208ENST00000583344 MSTNO14793 375 aa9.13□□□□□ -0.95
SMCHD1-208ENST00000583344 DGKGP49619 791 aa9.13□□□□□ -0.95
SMCHD1-208ENST00000583344 PSMA6P60900 246 aaKnown RBP9.13□□□□□ -0.95
SMCHD1-208ENST00000583344 ZNF468Q5VIY5 522 aaPredicted RBP9.13□□□□□ -0.95
SMCHD1-208ENST00000583344 CHSY3Q70JA7 882 aa9.13□□□□□ -0.95
SMCHD1-208ENST00000583344 SIX5Q8N196 739 aa9.13□□□□□ -0.95
SMCHD1-208ENST00000583344 PRR12Q9ULL5 1215 aa9.13□□□□□ -0.95
SMCHD1-208ENST00000583344 HCN4Q9Y3Q4 1203 aa9.13□□□□□ -0.95
SMCHD1-208ENST00000583344 LOC100996750A0A140TA64 210 aa9.12□□□□□ -0.95
SMCHD1-208ENST00000583344 PROCP04070 461 aa9.12□□□□□ -0.95
SMCHD1-208ENST00000583344 HSH2DQ96JZ2 352 aa9.12□□□□□ -0.95
SMCHD1-208ENST00000583344 KRTAP4-6Q9BYQ5 205 aa9.12□□□□□ -0.95
SMCHD1-208ENST00000583344 AVENQ9NQS1 362 aaPredicted RBP9.12□□□□□ -0.95
SMCHD1-208ENST00000583344 MAFBQ9Y5Q3 323 aaPredicted RBP9.12□□□□□ -0.95
SMCHD1-208ENST00000583344 RASA1P20936 1047 aa9.11□□□□□ -0.95
SMCHD1-208ENST00000583344 LAMC2Q13753 1193 aa9.11□□□□□ -0.95
SMCHD1-208ENST00000583344 PHACTR1Q9C0D0 580 aa9.11□□□□□ -0.95
SMCHD1-208ENST00000583344 NEUROD4Q9HD90 331 aa9.11□□□□□ -0.95
SMCHD1-208ENST00000583344 M0R2N6 131 aa9.1□□□□□ -0.95
SMCHD1-208ENST00000583344 C21orf2O43822 256 aa9.1□□□□□ -0.95
SMCHD1-208ENST00000583344 PPP1R12BO60237 982 aaPredicted RBP9.1□□□□□ -0.95
SMCHD1-208ENST00000583344 SFSWAPQ12872 951 aaKnown RBP9.1□□□□□ -0.95
SMCHD1-208ENST00000583344 GPC6Q9Y625 555 aaPredicted RBP9.1□□□□□ -0.95
SMCHD1-208ENST00000583344 GNB5O14775 395 aa9.09□□□□□ -0.95
SMCHD1-208ENST00000583344 HIRAP54198 1017 aaPredicted RBP9.09□□□□□ -0.95
SMCHD1-208ENST00000583344 POTEAQ6S8J7 498 aa9.09□□□□□ -0.95
SMCHD1-208ENST00000583344 SYT9Q86SS6 491 aa9.09□□□□□ -0.95
SMCHD1-208ENST00000583344 SLC30A3Q99726 388 aa9.09□□□□□ -0.95
SMCHD1-208ENST00000583344 CHMP3Q9Y3E7 222 aa9.09□□□□□ -0.95
SMCHD1-208ENST00000583344 RBM19Q9Y4C8 960 aaKnown RBP9.09□□□□□ -0.95
SMCHD1-208ENST00000583344 LGR5O75473 907 aa9.08□□□□□ -0.96
SMCHD1-208ENST00000583344 C1orf53Q5VUE5 145 aa9.08□□□□□ -0.96
SMCHD1-208ENST00000583344 ZNF280CQ8ND82 737 aa9.08□□□□□ -0.96
SMCHD1-208ENST00000583344 CALR3Q96L12 384 aaKnown RBP9.08□□□□□ -0.96
SMCHD1-208ENST00000583344 CRTC2Q53ET0 693 aaPredicted RBP9.07□□□□□ -0.96
SMCHD1-208ENST00000583344 RAB44Q7Z6P3 723 aaPredicted RBP9.07□□□□□ -0.96
SMCHD1-208ENST00000583344 PPP1R12CQ9BZL4 782 aa9.07□□□□□ -0.96
SMCHD1-208ENST00000583344 SEC13P55735 322 aa9.06□□□□□ -0.96
SMCHD1-208ENST00000583344 CHMP7Q8WUX9 453 aaPredicted RBP9.06□□□□□ -0.96
SMCHD1-208ENST00000583344 SCG3Q8WXD2 468 aaKnown RBP9.06□□□□□ -0.96
SMCHD1-208ENST00000583344 CEP63Q96MT8 703 aa9.06□□□□□ -0.96
SMCHD1-208ENST00000583344 BRD7Q9NPI1 651 aa9.06□□□□□ -0.96
SMCHD1-208ENST00000583344 ATAD2Q6PL18 1390 aa9.05□□□□□ -0.96
SMCHD1-208ENST00000583344 ELOA3CA0A087WX78 387 aaPredicted RBP9.05□□□□□ -0.96
SMCHD1-208ENST00000583344 A6NJR5 290 aa9.05□□□□□ -0.96
SMCHD1-208ENST00000583344 ELOA3DA6NLF2 546 aaPredicted RBP9.05□□□□□ -0.96
SMCHD1-208ENST00000583344 ELOA3BQ3SY89 546 aa9.05□□□□□ -0.96
SMCHD1-208ENST00000583344 LARP1Q6PKG0 1096 aaKnown RBP9.05□□□□□ -0.96
SMCHD1-208ENST00000583344 ALYREFQ86V81 257 aaKnown RBP9.05□□□□□ -0.96
SMCHD1-208ENST00000583344 ELOA3Q8NG57 546 aa9.05□□□□□ -0.96
SMCHD1-208ENST00000583344 GAS2L2Q8NHY3 880 aa9.05□□□□□ -0.96
SMCHD1-208ENST00000583344 NGLY1Q96IV0 654 aa9.05□□□□□ -0.96
SMCHD1-208ENST00000583344 SUSD3Q96L08 255 aa9.05□□□□□ -0.96
SMCHD1-208ENST00000583344 PIK3R2O00459 728 aa9.04□□□□□ -0.96
SMCHD1-208ENST00000583344 TYRO3Q06418 890 aa9.04□□□□□ -0.96
SMCHD1-208ENST00000583344 SPEM2Q0P670 501 aa9.04□□□□□ -0.96
SMCHD1-208ENST00000583344 DPYDQ12882 1025 aa9.04□□□□□ -0.96
SMCHD1-208ENST00000583344 KANK4Q5T7N3 995 aaPredicted RBP9.04□□□□□ -0.96
SMCHD1-208ENST00000583344 ALDH16A1Q8IZ83 802 aa9.04□□□□□ -0.96
SMCHD1-208ENST00000583344 TRIM11Q96F44 468 aa9.04□□□□□ -0.96
SMCHD1-208ENST00000583344 MDFIQ99750 246 aa9.04□□□□□ -0.96
SMCHD1-208ENST00000583344 C2orf49Q9BVC5 232 aaPredicted RBP9.04□□□□□ -0.96
SMCHD1-208ENST00000583344 SIN3BO75182 1162 aa9.03□□□□□ -0.96
SMCHD1-208ENST00000583344 PTK7Q13308 1070 aa9.03□□□□□ -0.96
SMCHD1-208ENST00000583344 NOP53Q9NZM5 478 aaKnown RBP9.03□□□□□ -0.96
SMCHD1-208ENST00000583344 ANKIB1Q9P2G1 1089 aa9.03□□□□□ -0.96
SMCHD1-208ENST00000583344 USP17L15C9J2P7 530 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 USP17L10C9JJH3 530 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 USP17L13C9JLJ4 530 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 USP17L12C9JPN9 530 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 USP17L11C9JVI0 530 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 USP17L21D6R901 530 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 USP17L18D6R9N7 530 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 USP17L22D6RA61 530 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 USP17L17D6RBQ6 530 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 USP17L19D6RCP7 530 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 USP17L20D6RJB6 530 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 LMOD1P29536 600 aaPredicted RBP9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 USP17L24Q0WX57 530 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 HINFPQ9BQA5 517 aa9.02□□□□□ -0.97
SMCHD1-208ENST00000583344 C1QTNF9BB2RNN3 333 aa9.01□□□□□ -0.97
SMCHD1-208ENST00000583344 ADAM23O75077 832 aa9.01□□□□□ -0.97
SMCHD1-208ENST00000583344 ALAS2P22557 587 aa9.01□□□□□ -0.97
SMCHD1-208ENST00000583344 CHRNA4P43681 627 aa9.01□□□□□ -0.97
SMCHD1-208ENST00000583344 BAG6P46379 1132 aa9.01□□□□□ -0.97
SMCHD1-208ENST00000583344 STAG2Q8N3U4 1231 aa9.01□□□□□ -0.97
SMCHD1-208ENST00000583344 PLVAPQ9BX97 442 aa9.01□□□□□ -0.97
SMCHD1-208ENST00000583344 KCNH4Q9UQ05 1017 aa9.01□□□□□ -0.97
SMCHD1-208ENST00000583344 CD163Q86VB7 1156 aa9□□□□□ -0.97
SMCHD1-208ENST00000583344 FAM196BA6NMK8 535 aa8.99□□□□□ -0.97
SMCHD1-208ENST00000583344 ADARB2-AS1A8MUL3 147 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms