RNA–Protein interactions for RNA: ENST00000577901.5

VAPA-204, Transcript of VAMP associated protein A, humanhuman

TSL 2

Gene VAPA, Length 917 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-204ENST00000577901 USP16Q9Y5T5 823 aa21.23■□□□□ 0.99
VAPA-204ENST00000577901 ST5P78524 1137 aa21.22■□□□□ 0.99
VAPA-204ENST00000577901 DPY19L2Q6NUT2 758 aa21.22■□□□□ 0.99
VAPA-204ENST00000577901 PCNTO95613 3336 aa21.22■□□□□ 0.99
VAPA-204ENST00000577901 ERFEQ4G0M1 354 aa21.21■□□□□ 0.99
VAPA-204ENST00000577901 RTF1Q92541 710 aaKnown RBP21.21■□□□□ 0.99
VAPA-204ENST00000577901 CCDC88AQ3V6T2 1871 aa21.2■□□□□ 0.98
VAPA-204ENST00000577901 PRAMEF22A3QJZ6 481 aa21.2■□□□□ 0.98
VAPA-204ENST00000577901 POTECB2RU33 542 aa21.2■□□□□ 0.98
VAPA-204ENST00000577901 NEFMP07197 916 aa21.2■□□□□ 0.98
VAPA-204ENST00000577901 PIP4K2AP48426 406 aaPredicted RBP21.2■□□□□ 0.98
VAPA-204ENST00000577901 STYK1Q6J9G0 422 aa21.2■□□□□ 0.98
VAPA-204ENST00000577901 CNKSR1Q969H4 720 aa21.2■□□□□ 0.98
VAPA-204ENST00000577901 PRKRIP1Q9H875 184 aaPredicted RBP21.2■□□□□ 0.98
VAPA-204ENST00000577901 BCORQ6W2J9 1755 aa21.19■□□□□ 0.98
VAPA-204ENST00000577901 SNRPA1P09661 255 aaKnown RBP21.19■□□□□ 0.98
VAPA-204ENST00000577901 SRGNP10124 158 aa21.19■□□□□ 0.98
VAPA-204ENST00000577901 MCM10Q7L590 875 aa21.19■□□□□ 0.98
VAPA-204ENST00000577901 TAOK3Q9H2K8 898 aa21.19■□□□□ 0.98
VAPA-204ENST00000577901 PNNQ9H307 717 aaKnown RBP21.19■□□□□ 0.98
VAPA-204ENST00000577901 LTBP3Q9NS15 1303 aa21.19■□□□□ 0.98
VAPA-204ENST00000577901 PRPF40BQ6NWY9 871 aaKnown RBP21.18■□□□□ 0.98
VAPA-204ENST00000577901 CLEC4GQ6UXB4 293 aa21.18■□□□□ 0.98
VAPA-204ENST00000577901 MASTLQ96GX5 879 aa21.18■□□□□ 0.98
VAPA-204ENST00000577901 FER1L6Q2WGJ9 1857 aa21.18■□□□□ 0.98
VAPA-204ENST00000577901 NBPF5PQ86XG9 351 aaPredicted RBP21.17■□□□□ 0.98
VAPA-204ENST00000577901 ZNF652Q9Y2D9 606 aa21.17■□□□□ 0.98
VAPA-204ENST00000577901 SOGA3Q5TF21 947 aa21.16■□□□□ 0.98
VAPA-204ENST00000577901 DCTN1Q14203 1278 aa21.15■□□□□ 0.98
VAPA-204ENST00000577901 SLX4Q8IY92 1834 aa21.14■□□□□ 0.97
VAPA-204ENST00000577901 HTATSF1O43719 755 aaKnown RBP21.14■□□□□ 0.97
VAPA-204ENST00000577901 COL13A1Q5TAT6 717 aaPredicted RBP21.14■□□□□ 0.97
VAPA-204ENST00000577901 DICER1Q9UPY3 1922 aaKnown RBP21.14■□□□□ 0.97
VAPA-204ENST00000577901 NBPF26B4DH59 902 aa21.13■□□□□ 0.97
VAPA-204ENST00000577901 NBPF10Q6P3W6 841 aaKnown RBP21.13■□□□□ 0.97
VAPA-204ENST00000577901 NBPF15Q8N660 670 aa21.13■□□□□ 0.97
VAPA-204ENST00000577901 DDNO94850 711 aaPredicted RBP21.12■□□□□ 0.97
VAPA-204ENST00000577901 NPR1P16066 1061 aa21.12■□□□□ 0.97
VAPA-204ENST00000577901 NIP7Q9Y221 180 aaKnown RBP eCLIP21.12■□□□□ 0.97
VAPA-204ENST00000577901 ARFGEF2Q9Y6D5 1785 aa21.12■□□□□ 0.97
VAPA-204ENST00000577901 CACNA1SQ13698 1873 aa21.11■□□□□ 0.97
VAPA-204ENST00000577901 RGL2O15211 777 aa21.11■□□□□ 0.97
VAPA-204ENST00000577901 TAF7Q15545 349 aaPredicted RBP21.11■□□□□ 0.97
VAPA-204ENST00000577901 TPTE2Q6XPS3 522 aa21.11■□□□□ 0.97
VAPA-204ENST00000577901 C7orf43Q8WVR3 580 aa21.11■□□□□ 0.97
VAPA-204ENST00000577901 CCDC93Q567U6 631 aa21.1■□□□□ 0.97
VAPA-204ENST00000577901 CHADLQ6NUI6 762 aa21.1■□□□□ 0.97
VAPA-204ENST00000577901 PLEKHF1Q96S99 279 aa21.1■□□□□ 0.97
VAPA-204ENST00000577901 MAPK8IP3Q9UPT6 1336 aa21.09■□□□□ 0.97
VAPA-204ENST00000577901 KLRG2A4D1S0 409 aaPredicted RBP21.09■□□□□ 0.97
VAPA-204ENST00000577901 WDR43Q15061 677 aaKnown RBP eCLIP21.09■□□□□ 0.97
VAPA-204ENST00000577901 MIS18AQ9NYP9 233 aa21.09■□□□□ 0.97
VAPA-204ENST00000577901 FAM177BA6PVY3 158 aa21.08■□□□□ 0.97
VAPA-204ENST00000577901 MAPK8IP2Q13387 824 aaPredicted RBP21.08■□□□□ 0.97
VAPA-204ENST00000577901 ANP32CO43423 234 aa21.07■□□□□ 0.96
VAPA-204ENST00000577901 POTEIP0CG38 1075 aa21.07■□□□□ 0.96
VAPA-204ENST00000577901 POTEJP0CG39 1038 aa21.07■□□□□ 0.96
VAPA-204ENST00000577901 HSPA1AP0DMV8 641 aaKnown RBP21.07■□□□□ 0.96
VAPA-204ENST00000577901 HSPA1BP0DMV9 641 aaKnown RBP21.07■□□□□ 0.96
VAPA-204ENST00000577901 HLFQ16534 295 aa21.07■□□□□ 0.96
VAPA-204ENST00000577901 IQCA1LA6NCM1 817 aa21.06■□□□□ 0.96
VAPA-204ENST00000577901 FKBP4Q02790 459 aaKnown RBP eCLIP21.06■□□□□ 0.96
VAPA-204ENST00000577901 GTF2E1P29083 439 aaPredicted RBP21.05■□□□□ 0.96
VAPA-204ENST00000577901 NFE2L2Q16236 605 aa21.05■□□□□ 0.96
VAPA-204ENST00000577901 ZNF277Q9NRM2 450 aaPredicted RBP21.05■□□□□ 0.96
VAPA-204ENST00000577901 CREBZFQ9NS37 354 aa21.05■□□□□ 0.96
VAPA-204ENST00000577901 OLFM4Q6UX06 510 aa21.04■□□□□ 0.96
VAPA-204ENST00000577901 RTKN2Q8IZC4 609 aa21.04■□□□□ 0.96
VAPA-204ENST00000577901 TNS4Q8IZW8 715 aa21.04■□□□□ 0.96
VAPA-204ENST00000577901 PNISRQ8TF01 805 aaKnown RBP21.04■□□□□ 0.96
VAPA-204ENST00000577901 L3MBTL3Q96JM7 780 aaPredicted RBP21.04■□□□□ 0.96
VAPA-204ENST00000577901 LAMB4A4D0S4 1761 aa21.03■□□□□ 0.96
VAPA-204ENST00000577901 ALDH1B1P30837 517 aa21.03■□□□□ 0.96
VAPA-204ENST00000577901 LDHDQ86WU2 507 aa21.03■□□□□ 0.96
VAPA-204ENST00000577901 NGEFQ8N5V2 710 aa21.03■□□□□ 0.96
VAPA-204ENST00000577901 TAF1DQ9H5J8 278 aaPredicted RBP21.03■□□□□ 0.96
VAPA-204ENST00000577901 NYXQ9GZU5 481 aa21.02■□□□□ 0.96
VAPA-204ENST00000577901 ADAMTS8Q9UP79 889 aa21.02■□□□□ 0.96
VAPA-204ENST00000577901 ZNF541Q9H0D2 1346 aa21.02■□□□□ 0.95
VAPA-204ENST00000577901 ERVV-1B6SEH8 477 aa21.01■□□□□ 0.95
VAPA-204ENST00000577901 MKRN1Q9UHC7 482 aaKnown RBP21.01■□□□□ 0.95
VAPA-204ENST00000577901 EIF4A1P60842 406 aaKnown RBP21■□□□□ 0.95
VAPA-204ENST00000577901 NUTM1Q86Y26 1132 aa21■□□□□ 0.95
VAPA-204ENST00000577901 RRP7AQ9Y3A4 280 aaKnown RBP21■□□□□ 0.95
VAPA-204ENST00000577901 MAP3K15Q6ZN16 1313 aa21■□□□□ 0.95
VAPA-204ENST00000577901 KDM3BQ7LBC6 1761 aa21■□□□□ 0.95
VAPA-204ENST00000577901 SCN4AP35499 1836 aa20.99■□□□□ 0.95
VAPA-204ENST00000577901 ABCC12Q96J65 1359 aa20.99■□□□□ 0.95
VAPA-204ENST00000577901 CAPN15O75808 1086 aa20.99■□□□□ 0.95
VAPA-204ENST00000577901 IARSP41252 1262 aaKnown RBP20.99■□□□□ 0.95
VAPA-204ENST00000577901 RIPK4P57078 832 aa20.99■□□□□ 0.95
VAPA-204ENST00000577901 CRY2Q49AN0 593 aa20.99■□□□□ 0.95
VAPA-204ENST00000577901 KIF6Q6ZMV9 814 aa20.99■□□□□ 0.95
VAPA-204ENST00000577901 SYNE4Q8N205 404 aa20.99■□□□□ 0.95
VAPA-204ENST00000577901 RUNDC1Q96C34 613 aa20.99■□□□□ 0.95
VAPA-204ENST00000577901 PASKQ96RG2 1323 aa20.99■□□□□ 0.95
VAPA-204ENST00000577901 MYL6BP14649 208 aa20.98■□□□□ 0.95
VAPA-204ENST00000577901 EAPPQ56P03 285 aaPredicted RBP20.98■□□□□ 0.95
VAPA-204ENST00000577901 TTLL7Q6ZT98 887 aa20.98■□□□□ 0.95
VAPA-204ENST00000577901 CCDC146Q8IYE0 955 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms