RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TMX3Q96JJ7 454 aa12.27□□□□□ -0.45
VPS53-220ENST00000576149 TTC41PQ6P2S7 1318 aa12.26□□□□□ -0.45
VPS53-220ENST00000576149 PKP1Q13835 747 aa12.26□□□□□ -0.45
VPS53-220ENST00000576149 CNTROBQ8N137 903 aa12.26□□□□□ -0.45
VPS53-220ENST00000576149 SPG7Q9UQ90 795 aa12.26□□□□□ -0.45
VPS53-220ENST00000576149 ABCC6O95255 1503 aa12.26□□□□□ -0.45
VPS53-220ENST00000576149 GRM8O00222 908 aa12.26□□□□□ -0.45
VPS53-220ENST00000576149 MAP4K4O95819 1239 aaPredicted RBP12.26□□□□□ -0.45
VPS53-220ENST00000576149 OS9Q13438 667 aaPredicted RBP12.26□□□□□ -0.45
VPS53-220ENST00000576149 PLEKHG2Q9H7P9 1386 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 COL18A1P39060 1754 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 MEGF6O75095 1541 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 SGSM2O43147 1006 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 GLRX3O76003 335 aaKnown RBP12.25□□□□□ -0.45
VPS53-220ENST00000576149 HSPA4P34932 840 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 SLC39A6Q13433 755 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 ERC1Q8IUD2 1116 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 CLASRPQ8N2M8 674 aaKnown RBP12.25□□□□□ -0.45
VPS53-220ENST00000576149 CUL4AQ13619 759 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 KLHL40Q2TBA0 621 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 IFNL2Q8IZJ0 200 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 NFATC2IPQ8NCF5 419 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 KAZALD1Q96I82 304 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 ZDHHC9Q9Y397 364 aa12.25□□□□□ -0.45
VPS53-220ENST00000576149 SCN11AQ9UI33 1791 aa12.24□□□□□ -0.45
VPS53-220ENST00000576149 CRYBG1Q9Y4K1 1723 aa12.24□□□□□ -0.45
VPS53-220ENST00000576149 AIMP1Q12904 312 aaKnown RBP12.24□□□□□ -0.45
VPS53-220ENST00000576149 CADPS2Q86UW7 1296 aa12.24□□□□□ -0.45
VPS53-220ENST00000576149 SUCLG2Q96I99 432 aa12.24□□□□□ -0.45
VPS53-220ENST00000576149 GRPEL1Q9HAV7 217 aa12.24□□□□□ -0.45
VPS53-220ENST00000576149 STRCP1A6NGW2 1772 aa12.24□□□□□ -0.45
VPS53-220ENST00000576149 TNS3Q68CZ2 1445 aa12.24□□□□□ -0.45
VPS53-220ENST00000576149 MCTP1Q6DN14 999 aa12.23□□□□□ -0.45
VPS53-220ENST00000576149 CABLES1Q8TDN4 633 aa12.23□□□□□ -0.45
VPS53-220ENST00000576149 PA2G4Q9UQ80 394 aaKnown RBP12.23□□□□□ -0.45
VPS53-220ENST00000576149 RAD50Q92878 1312 aa12.23□□□□□ -0.45
VPS53-220ENST00000576149 AK9Q5TCS8 1911 aa12.23□□□□□ -0.45
VPS53-220ENST00000576149 IGKV5-2P06315 115 aa12.23□□□□□ -0.45
VPS53-220ENST00000576149 CSB-PGBD3P0DP91 1061 aa12.23□□□□□ -0.45
VPS53-220ENST00000576149 LARP1Q6PKG0 1096 aaKnown RBP12.23□□□□□ -0.45
VPS53-220ENST00000576149 FAM43AQ8N2R8 423 aa12.23□□□□□ -0.45
VPS53-220ENST00000576149 INTS4Q96HW7 963 aaKnown RBP12.23□□□□□ -0.45
VPS53-220ENST00000576149 PANK2Q9BZ23 570 aa12.23□□□□□ -0.45
VPS53-220ENST00000576149 ECHDC1Q9NTX5 307 aa12.23□□□□□ -0.45
VPS53-220ENST00000576149 DDX49Q9Y6V7 483 aaKnown RBP12.23□□□□□ -0.45
VPS53-220ENST00000576149 RIC3Q7Z5B4 369 aa12.22□□□□□ -0.45
VPS53-220ENST00000576149 ZNF496Q96IT1 587 aaPredicted RBP12.22□□□□□ -0.45
VPS53-220ENST00000576149 LSG1Q9H089 658 aaKnown RBP12.22□□□□□ -0.45
VPS53-220ENST00000576149 BICC1Q9H694 974 aaKnown RBP12.22□□□□□ -0.45
VPS53-220ENST00000576149 LMBRD1Q9NUN5 540 aa12.22□□□□□ -0.45
VPS53-220ENST00000576149 C5P01031 1676 aa12.22□□□□□ -0.45
VPS53-220ENST00000576149 MRC1P22897 1456 aa12.22□□□□□ -0.45
VPS53-220ENST00000576149 GAS2L3Q86XJ1 694 aa12.22□□□□□ -0.45
VPS53-220ENST00000576149 DCAF5Q96JK2 942 aa12.22□□□□□ -0.45
VPS53-220ENST00000576149 UPF3BQ9BZI7 483 aaKnown RBP12.22□□□□□ -0.45
VPS53-220ENST00000576149 SPATA31A3Q5VYP0 1347 aa12.22□□□□□ -0.45
VPS53-220ENST00000576149 CYP27B1O15528 508 aa12.21□□□□□ -0.45
VPS53-220ENST00000576149 IFIT2P09913 472 aaKnown RBP12.21□□□□□ -0.45
VPS53-220ENST00000576149 CHRNA2Q15822 529 aa12.21□□□□□ -0.45
VPS53-220ENST00000576149 GPATCH3Q96I76 525 aa12.21□□□□□ -0.45
VPS53-220ENST00000576149 NEURL1BA8MQ27 555 aa12.21□□□□□ -0.46
VPS53-220ENST00000576149 SASH1O94885 1247 aa12.21□□□□□ -0.46
VPS53-220ENST00000576149 MYL6BP14649 208 aa12.21□□□□□ -0.46
VPS53-220ENST00000576149 NEXNQ0ZGT2 675 aa12.21□□□□□ -0.46
VPS53-220ENST00000576149 CWC27Q6UX04 472 aaKnown RBP12.21□□□□□ -0.46
VPS53-220ENST00000576149 LRP10Q7Z4F1 713 aa12.21□□□□□ -0.46
VPS53-220ENST00000576149 XAGE3Q8WTP9 111 aa12.21□□□□□ -0.46
VPS53-220ENST00000576149 CPDO75976 1380 aa12.21□□□□□ -0.46
VPS53-220ENST00000576149 SNRPA1P09661 255 aaKnown RBP12.2□□□□□ -0.46
VPS53-220ENST00000576149 COPS6Q7L5N1 327 aa12.2□□□□□ -0.46
VPS53-220ENST00000576149 METTL22Q9BUU2 404 aaPredicted RBP12.2□□□□□ -0.46
VPS53-220ENST00000576149 SNX14Q9Y5W7 946 aa12.2□□□□□ -0.46
VPS53-220ENST00000576149 NPM3O75607 178 aaKnown RBP12.2□□□□□ -0.46
VPS53-220ENST00000576149 BRD1O95696 1058 aa12.2□□□□□ -0.46
VPS53-220ENST00000576149 G3BP1Q13283 466 aaKnown RBP eCLIP12.2□□□□□ -0.46
VPS53-220ENST00000576149 GCKRQ14397 625 aa12.2□□□□□ -0.46
VPS53-220ENST00000576149 KIAA1211Q6ZU35 1233 aa12.2□□□□□ -0.46
VPS53-220ENST00000576149 AACSQ86V21 672 aa12.2□□□□□ -0.46
VPS53-220ENST00000576149 TTC5Q8N0Z6 440 aa12.2□□□□□ -0.46
VPS53-220ENST00000576149 USP16Q9Y5T5 823 aa12.2□□□□□ -0.46
VPS53-220ENST00000576149 ANKRD13DQ6ZTN6 518 aa12.19□□□□□ -0.46
VPS53-220ENST00000576149 RUFY2Q8WXA3 655 aa12.19□□□□□ -0.46
VPS53-220ENST00000576149 EVI5LQ96CN4 794 aa12.19□□□□□ -0.46
VPS53-220ENST00000576149 DIAPH3Q9NSV4 1193 aa12.19□□□□□ -0.46
VPS53-220ENST00000576149 PKD1L3Q7Z443 1732 aa12.19□□□□□ -0.46
VPS53-220ENST00000576149 NOL8Q76FK4 1167 aaKnown RBP12.19□□□□□ -0.46
VPS53-220ENST00000576149 EAF2Q96CJ1 260 aaPredicted RBP12.19□□□□□ -0.46
VPS53-220ENST00000576149 FMNL2Q96PY5 1086 aa12.19□□□□□ -0.46
VPS53-220ENST00000576149 MYD88Q99836 296 aa12.19□□□□□ -0.46
VPS53-220ENST00000576149 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.19□□□□□ -0.46
VPS53-220ENST00000576149 RASEFQ8IZ41 740 aa12.18□□□□□ -0.46
VPS53-220ENST00000576149 TTC14Q96N46 770 aa12.18□□□□□ -0.46
VPS53-220ENST00000576149 PRPF40AO75400 957 aaKnown RBP12.18□□□□□ -0.46
VPS53-220ENST00000576149 VSIG10Q8N0Z9 540 aa12.18□□□□□ -0.46
VPS53-220ENST00000576149 CABP4P57796 275 aa12.17□□□□□ -0.46
VPS53-220ENST00000576149 ZNF445P59923 1031 aa12.17□□□□□ -0.46
VPS53-220ENST00000576149 EPHA10Q5JZY3 1008 aa12.17□□□□□ -0.46
VPS53-220ENST00000576149 KCNB2Q92953 911 aa12.16□□□□□ -0.46
VPS53-220ENST00000576149 CCDC8Q9H0W5 538 aaPredicted RBP12.16□□□□□ -0.46
VPS53-220ENST00000576149 PTH1RQ03431 593 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms