RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 MAP4K4O95819 1239 aaPredicted RBP12.26□□□□□ -0.45
SMG6-213ENST00000573166 CCDC152Q4G0S7 254 aa12.26□□□□□ -0.45
SMG6-213ENST00000573166 PLBD2Q8NHP8 589 aa12.26□□□□□ -0.45
SMG6-213ENST00000573166 RBM6P78332 1123 aaKnown RBP12.25□□□□□ -0.45
SMG6-213ENST00000573166 TRDNQ13061 729 aa12.25□□□□□ -0.45
SMG6-213ENST00000573166 RNF20Q5VTR2 975 aa12.25□□□□□ -0.45
SMG6-213ENST00000573166 USP19O94966 1318 aa12.25□□□□□ -0.45
SMG6-213ENST00000573166 MED14O60244 1454 aa12.25□□□□□ -0.45
SMG6-213ENST00000573166 CHAF1AQ13111 956 aaPredicted RBP12.25□□□□□ -0.45
SMG6-213ENST00000573166 CCDC8Q9H0W5 538 aaPredicted RBP12.25□□□□□ -0.45
SMG6-213ENST00000573166 OVOS2A0A0J9YW53 1432 aa12.25□□□□□ -0.45
SMG6-213ENST00000573166 OVOS2Q6IE36 1432 aa12.25□□□□□ -0.45
SMG6-213ENST00000573166 C6orf229H3BNL8 230 aa12.25□□□□□ -0.45
SMG6-213ENST00000573166 GNL2Q13823 731 aaKnown RBP12.25□□□□□ -0.45
SMG6-213ENST00000573166 GLIPR1L2Q4G1C9 344 aa12.25□□□□□ -0.45
SMG6-213ENST00000573166 NYXQ9GZU5 481 aa12.25□□□□□ -0.45
SMG6-213ENST00000573166 ABCF2Q9UG63 623 aa12.25□□□□□ -0.45
SMG6-213ENST00000573166 CAVIN4Q5BKX8 364 aa12.24□□□□□ -0.45
SMG6-213ENST00000573166 PIGBQ92521 554 aa12.24□□□□□ -0.45
SMG6-213ENST00000573166 IRS4O14654 1257 aaPredicted RBP12.24□□□□□ -0.45
SMG6-213ENST00000573166 KCNQ4P56696 695 aa12.24□□□□□ -0.45
SMG6-213ENST00000573166 FAM89AQ96GI7 184 aa12.24□□□□□ -0.45
SMG6-213ENST00000573166 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.24□□□□□ -0.45
SMG6-213ENST00000573166 PARP3Q9Y6F1 533 aa12.24□□□□□ -0.45
SMG6-213ENST00000573166 CRB1P82279 1406 aa12.23□□□□□ -0.45
SMG6-213ENST00000573166 PNPLA6Q8IY17 1366 aa12.23□□□□□ -0.45
SMG6-213ENST00000573166 METTL22Q9BUU2 404 aaPredicted RBP12.23□□□□□ -0.45
SMG6-213ENST00000573166 LRP2BPQ9P2M1 347 aa12.23□□□□□ -0.45
SMG6-213ENST00000573166 HIP1O00291 1037 aa12.23□□□□□ -0.45
SMG6-213ENST00000573166 RAD21O60216 631 aa12.23□□□□□ -0.45
SMG6-213ENST00000573166 IDH1O75874 414 aaKnown RBP12.23□□□□□ -0.45
SMG6-213ENST00000573166 SLKQ9H2G2 1235 aaPredicted RBP12.23□□□□□ -0.45
SMG6-213ENST00000573166 POLD1P28340 1107 aa12.22□□□□□ -0.45
SMG6-213ENST00000573166 ANKRD18AQ8IVF6 992 aa12.22□□□□□ -0.45
SMG6-213ENST00000573166 RAI14Q9P0K7 980 aa12.22□□□□□ -0.45
SMG6-213ENST00000573166 SLC5A1P13866 664 aa12.22□□□□□ -0.45
SMG6-213ENST00000573166 MX1P20591 662 aa12.22□□□□□ -0.45
SMG6-213ENST00000573166 BOLA2Q9H3K6 86 aa12.22□□□□□ -0.45
SMG6-213ENST00000573166 WWC3Q9ULE0 1092 aa12.22□□□□□ -0.45
SMG6-213ENST00000573166 PCDHB15Q9Y5E8 787 aa12.22□□□□□ -0.45
SMG6-213ENST00000573166 VPS72Q15906 364 aa12.22□□□□□ -0.45
SMG6-213ENST00000573166 SH3TC1Q8TE82 1336 aa12.21□□□□□ -0.45
SMG6-213ENST00000573166 GLRX3O76003 335 aaKnown RBP12.21□□□□□ -0.45
SMG6-213ENST00000573166 RBM5P52756 815 aaKnown RBP eCLIP12.21□□□□□ -0.45
SMG6-213ENST00000573166 PARP10Q53GL7 1025 aa12.21□□□□□ -0.45
SMG6-213ENST00000573166 RALYLQ86SE5 291 aaKnown RBP12.21□□□□□ -0.45
SMG6-213ENST00000573166 ANKRD44Q8N8A2 993 aa12.21□□□□□ -0.45
SMG6-213ENST00000573166 CNBD1Q8NA66 436 aa12.21□□□□□ -0.45
SMG6-213ENST00000573166 FOXD4L1Q9NU39 408 aa12.21□□□□□ -0.45
SMG6-213ENST00000573166 CCDC191Q8NCU4 936 aa12.21□□□□□ -0.46
SMG6-213ENST00000573166 HCLS1P14317 486 aaPredicted RBP12.2□□□□□ -0.46
SMG6-213ENST00000573166 SYNE3Q6ZMZ3 975 aa12.2□□□□□ -0.46
SMG6-213ENST00000573166 TTLL7Q6ZT98 887 aa12.2□□□□□ -0.46
SMG6-213ENST00000573166 IL27Q8NEV9 243 aa12.2□□□□□ -0.46
SMG6-213ENST00000573166 LRRC7Q96NW7 1537 aa12.2□□□□□ -0.46
SMG6-213ENST00000573166 ATP8B2P98198 1209 aa12.2□□□□□ -0.46
SMG6-213ENST00000573166 ZBTB1Q9Y2K1 713 aa12.2□□□□□ -0.46
SMG6-213ENST00000573166 ARHGEF28Q8N1W1 1705 aaKnown RBP12.2□□□□□ -0.46
SMG6-213ENST00000573166 PRAMEF22A3QJZ6 481 aa12.2□□□□□ -0.46
SMG6-213ENST00000573166 CRKLP46109 303 aaKnown RBP12.2□□□□□ -0.46
SMG6-213ENST00000573166 GOLGA6L4A6NEF3 574 aa12.19□□□□□ -0.46
SMG6-213ENST00000573166 ZSCAN25Q6NSZ9 544 aa12.19□□□□□ -0.46
SMG6-213ENST00000573166 PA2G4Q9UQ80 394 aaKnown RBP12.19□□□□□ -0.46
SMG6-213ENST00000573166 CCDC24Q8N4L8 307 aa12.19□□□□□ -0.46
SMG6-213ENST00000573166 RHPN1Q8TCX5 695 aa12.19□□□□□ -0.46
SMG6-213ENST00000573166 ERBB4Q15303 1308 aa12.19□□□□□ -0.46
SMG6-213ENST00000573166 C22orf23Q9BZE7 217 aa12.19□□□□□ -0.46
SMG6-213ENST00000573166 IGHDP01880 384 aa12.18□□□□□ -0.46
SMG6-213ENST00000573166 ZRSR1Q15695 479 aaKnown RBP12.18□□□□□ -0.46
SMG6-213ENST00000573166 SPATA31A1Q5TZJ5 1347 aa12.18□□□□□ -0.46
SMG6-213ENST00000573166 PROSER3Q2NL68 480 aa12.18□□□□□ -0.46
SMG6-213ENST00000573166 BICC1Q9H694 974 aaKnown RBP12.18□□□□□ -0.46
SMG6-213ENST00000573166 ZBTB40Q9NUA8 1239 aa12.18□□□□□ -0.46
SMG6-213ENST00000573166 ZNF853P0CG23 659 aa12.18□□□□□ -0.46
SMG6-213ENST00000573166 TCIRG1Q13488 830 aa12.18□□□□□ -0.46
SMG6-213ENST00000573166 SNRKQ9NRH2 765 aa12.18□□□□□ -0.46
SMG6-213ENST00000573166 CWC27Q6UX04 472 aaKnown RBP12.17□□□□□ -0.46
SMG6-213ENST00000573166 ERICH2A1L162 156 aa12.17□□□□□ -0.46
SMG6-213ENST00000573166 KCNQ2O43526 872 aa12.17□□□□□ -0.46
SMG6-213ENST00000573166 GCKRQ14397 625 aa12.17□□□□□ -0.46
SMG6-213ENST00000573166 CPLX2Q6PUV4 134 aaKnown RBP12.17□□□□□ -0.46
SMG6-213ENST00000573166 ECHDC1Q9NTX5 307 aa12.17□□□□□ -0.46
SMG6-213ENST00000573166 PALLDQ8WX93 1383 aa12.17□□□□□ -0.46
SMG6-213ENST00000573166 ADAMTSL3P82987 1691 aa12.17□□□□□ -0.46
SMG6-213ENST00000573166 IL15P40933 162 aaPredicted RBP12.17□□□□□ -0.46
SMG6-213ENST00000573166 HELBQ8NG08 1087 aaPredicted RBP12.17□□□□□ -0.46
SMG6-213ENST00000573166 NSFL1CQ9UNZ2 370 aaKnown RBP12.17□□□□□ -0.46
SMG6-213ENST00000573166 ZNF521Q96K83 1311 aa12.17□□□□□ -0.46
SMG6-213ENST00000573166 ZBTB7BO15156 539 aaPredicted RBP12.16□□□□□ -0.46
SMG6-213ENST00000573166 NBPF7P0C2Y1 421 aaPredicted RBP12.16□□□□□ -0.46
SMG6-213ENST00000573166 ATP2B3Q16720 1220 aa12.16□□□□□ -0.46
SMG6-213ENST00000573166 CEP85Q6P2H3 762 aa12.16□□□□□ -0.46
SMG6-213ENST00000573166 NFXL1Q6ZNB6 911 aa12.16□□□□□ -0.46
SMG6-213ENST00000573166 FLAD1Q8NFF5 587 aa12.16□□□□□ -0.46
SMG6-213ENST00000573166 NACAP1Q9BZK3 213 aa12.16□□□□□ -0.46
SMG6-213ENST00000573166 KIF3AQ9Y496 699 aa12.16□□□□□ -0.46
SMG6-213ENST00000573166 SSH2Q76I76 1423 aa12.16□□□□□ -0.46
SMG6-213ENST00000573166 IL6STP40189 918 aaPredicted RBP12.16□□□□□ -0.46
SMG6-213ENST00000573166 HDAC1Q13547 482 aaPredicted RBP12.16□□□□□ -0.46
SMG6-213ENST00000573166 AKAP17AQ02040 695 aaKnown RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms