RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 BLMP54132 1417 aaPredicted RBP13.33□□□□□ -0.28
CIITA-208ENST00000572665 DXOO77932 396 aaKnown RBP13.33□□□□□ -0.28
CIITA-208ENST00000572665 WWC1Q8IX03 1113 aa13.33□□□□□ -0.28
CIITA-208ENST00000572665 MMP16P51512 607 aa13.32□□□□□ -0.28
CIITA-208ENST00000572665 IRF5Q13568 498 aa13.32□□□□□ -0.28
CIITA-208ENST00000572665 ZNF516Q92618 1163 aa13.32□□□□□ -0.28
CIITA-208ENST00000572665 PRDM9Q9NQV7 894 aa13.32□□□□□ -0.28
CIITA-208ENST00000572665 BRWD3Q6RI45 1802 aa13.32□□□□□ -0.28
CIITA-208ENST00000572665 A0A0G2JS52 829 aa13.31□□□□□ -0.28
CIITA-208ENST00000572665 F12P00748 615 aaPredicted RBP13.31□□□□□ -0.28
CIITA-208ENST00000572665 MYT1Q01538 1121 aa13.31□□□□□ -0.28
CIITA-208ENST00000572665 SEPT12Q8IYM1 358 aa13.31□□□□□ -0.28
CIITA-208ENST00000572665 ATP7BP35670 1465 aa13.3□□□□□ -0.28
CIITA-208ENST00000572665 FAM83GA6ND36 823 aa13.3□□□□□ -0.28
CIITA-208ENST00000572665 KRT27Q7Z3Y8 459 aa13.3□□□□□ -0.28
CIITA-208ENST00000572665 NUDT16Q96DE0 195 aaKnown RBP13.3□□□□□ -0.28
CIITA-208ENST00000572665 BTG4Q9NY30 223 aa13.3□□□□□ -0.28
CIITA-208ENST00000572665 PRR36Q9H6K5 1346 aa13.3□□□□□ -0.28
CIITA-208ENST00000572665 SPNS2Q8IVW8 549 aa13.29□□□□□ -0.28
CIITA-208ENST00000572665 NRAPQ86VF7 1730 aa13.29□□□□□ -0.28
CIITA-208ENST00000572665 RNF166Q96A37 237 aaPredicted RBP13.28□□□□□ -0.28
CIITA-208ENST00000572665 CDK19Q9BWU1 502 aa13.28□□□□□ -0.28
CIITA-208ENST00000572665 PRDM11Q9NQV5 511 aa13.28□□□□□ -0.28
CIITA-208ENST00000572665 MAP10Q9P2G4 905 aa13.28□□□□□ -0.28
CIITA-208ENST00000572665 CRYBG1Q9Y4K1 1723 aa13.27□□□□□ -0.29
CIITA-208ENST00000572665 CCNYL3P0C7X3 344 aa13.26□□□□□ -0.29
CIITA-208ENST00000572665 NUDT12Q9BQG2 462 aa13.26□□□□□ -0.29
CIITA-208ENST00000572665 HCSTQ9UBK5 93 aa13.26□□□□□ -0.29
CIITA-208ENST00000572665 TOPAZ1Q8N9V7 1692 aa13.25□□□□□ -0.29
CIITA-208ENST00000572665 POLR3AO14802 1390 aaPredicted RBP13.25□□□□□ -0.29
CIITA-208ENST00000572665 WASHC4Q2M389 1173 aa13.25□□□□□ -0.29
CIITA-208ENST00000572665 PNMA1Q8ND90 353 aa13.25□□□□□ -0.29
CIITA-208ENST00000572665 SLC6A16Q9GZN6 736 aa13.25□□□□□ -0.29
CIITA-208ENST00000572665 PLSCR2Q9NRY7 297 aa13.25□□□□□ -0.29
CIITA-208ENST00000572665 PHRF1Q9P1Y6 1649 aaKnown RBP13.24□□□□□ -0.29
CIITA-208ENST00000572665 POM121CA8CG34 1229 aa13.24□□□□□ -0.29
CIITA-208ENST00000572665 BAG6P46379 1132 aa13.24□□□□□ -0.29
CIITA-208ENST00000572665 SRPK2P78362 688 aaKnown RBP13.24□□□□□ -0.29
CIITA-208ENST00000572665 CCDC82Q8N4S0 544 aa13.24□□□□□ -0.29
CIITA-208ENST00000572665 EVA1BQ9NVM1 165 aa13.24□□□□□ -0.29
CIITA-208ENST00000572665 BRD4O60885 1362 aaPredicted RBP13.23□□□□□ -0.29
CIITA-208ENST00000572665 ACEP12821 1306 aa13.23□□□□□ -0.29
CIITA-208ENST00000572665 SPATA31A5Q5VU36 1347 aa13.23□□□□□ -0.29
CIITA-208ENST00000572665 SPATA31A7Q8IWB4 1347 aa13.23□□□□□ -0.29
CIITA-208ENST00000572665 CENPJQ9HC77 1338 aaPredicted RBP13.23□□□□□ -0.29
CIITA-208ENST00000572665 RGPD1P0DJD0 1748 aa13.23□□□□□ -0.29
CIITA-208ENST00000572665 CTHP32929 405 aa13.23□□□□□ -0.29
CIITA-208ENST00000572665 NBPF8Q3BBV2 869 aa13.23□□□□□ -0.29
CIITA-208ENST00000572665 ABTB2Q8N961 1025 aa13.23□□□□□ -0.29
CIITA-208ENST00000572665 NKX2-3Q8TAU0 364 aa13.23□□□□□ -0.29
CIITA-208ENST00000572665 ARID3AQ99856 593 aa13.23□□□□□ -0.29
CIITA-208ENST00000572665 EVA1CP58658 441 aa13.22□□□□□ -0.29
CIITA-208ENST00000572665 KCNH2Q12809 1159 aa13.22□□□□□ -0.29
CIITA-208ENST00000572665 FKBPLQ9UIM3 349 aa13.22□□□□□ -0.29
CIITA-208ENST00000572665 QRICH2Q9H0J4 1663 aa13.21□□□□□ -0.29
CIITA-208ENST00000572665 KIAA0232Q92628 1395 aa13.21□□□□□ -0.29
CIITA-208ENST00000572665 NLRP13Q86W25 1043 aa13.21□□□□□ -0.29
CIITA-208ENST00000572665 ARXQ96QS3 562 aa13.21□□□□□ -0.29
CIITA-208ENST00000572665 EP400Q96L91 3159 aa13.21□□□□□ -0.3
CIITA-208ENST00000572665 VAC14Q08AM6 782 aa13.2□□□□□ -0.3
CIITA-208ENST00000572665 NBPF1Q3BBV0 1214 aa13.2□□□□□ -0.3
CIITA-208ENST00000572665 DEFB132Q7Z7B7 95 aa13.2□□□□□ -0.3
CIITA-208ENST00000572665 PPIP5K1Q6PFW1 1433 aa13.2□□□□□ -0.3
CIITA-208ENST00000572665 SPATA31A1Q5TZJ5 1347 aa13.19□□□□□ -0.3
CIITA-208ENST00000572665 ZC3H4Q9UPT8 1303 aaKnown RBP13.19□□□□□ -0.3
CIITA-208ENST00000572665 THSD7AQ9UPZ6 1657 aa13.19□□□□□ -0.3
CIITA-208ENST00000572665 ZC3H6P61129 1189 aaKnown RBP13.19□□□□□ -0.3
CIITA-208ENST00000572665 STRN4Q9NRL3 753 aa13.19□□□□□ -0.3
CIITA-208ENST00000572665 EVC2Q86UK5 1308 aa13.18□□□□□ -0.3
CIITA-208ENST00000572665 ITGBL1O95965 494 aaPredicted RBP13.18□□□□□ -0.3
CIITA-208ENST00000572665 S1PR4O95977 384 aa13.18□□□□□ -0.3
CIITA-208ENST00000572665 NUTM2GQ5VZR2 741 aa13.18□□□□□ -0.3
CIITA-208ENST00000572665 GLMNQ92990 594 aa13.18□□□□□ -0.3
CIITA-208ENST00000572665 CPDO75976 1380 aa13.18□□□□□ -0.3
CIITA-208ENST00000572665 NRKQ7Z2Y5 1582 aa13.17□□□□□ -0.3
CIITA-208ENST00000572665 C11orf95C9JLR9 678 aaPredicted RBP13.17□□□□□ -0.3
CIITA-208ENST00000572665 CHRNA2Q15822 529 aa13.17□□□□□ -0.3
CIITA-208ENST00000572665 FAM196AQ6ZSG2 479 aa13.17□□□□□ -0.3
CIITA-208ENST00000572665 KCNC4Q03721 635 aa13.16□□□□□ -0.3
CIITA-208ENST00000572665 PDE3BQ13370 1112 aa13.16□□□□□ -0.3
CIITA-208ENST00000572665 CCDC24Q8N4L8 307 aa13.16□□□□□ -0.3
CIITA-208ENST00000572665 L3MBTL2Q969R5 705 aa13.16□□□□□ -0.3
CIITA-208ENST00000572665 CALR3Q96L12 384 aaKnown RBP13.16□□□□□ -0.3
CIITA-208ENST00000572665 THRAP3Q9Y2W1 955 aaKnown RBP13.16□□□□□ -0.3
CIITA-208ENST00000572665 USP19O94966 1318 aa13.15□□□□□ -0.3
CIITA-208ENST00000572665 SSH2Q76I76 1423 aa13.15□□□□□ -0.3
CIITA-208ENST00000572665 TRPM1Q7Z4N2 1603 aa13.15□□□□□ -0.3
CIITA-208ENST00000572665 ARMC2Q8NEN0 867 aa13.15□□□□□ -0.3
CIITA-208ENST00000572665 ADAMTS19Q8TE59 1207 aa13.15□□□□□ -0.3
CIITA-208ENST00000572665 CCDC97Q96F63 343 aaPredicted RBP13.15□□□□□ -0.3
CIITA-208ENST00000572665 SERPINA10Q9UK55 444 aa13.15□□□□□ -0.3
CIITA-208ENST00000572665 ROCK2O75116 1388 aaKnown RBP13.15□□□□□ -0.3
CIITA-208ENST00000572665 GCP02774 474 aa13.14□□□□□ -0.31
CIITA-208ENST00000572665 PTCRAQ6ISU1 281 aaPredicted RBP13.14□□□□□ -0.31
CIITA-208ENST00000572665 TCP11L2Q8N4U5 519 aa13.14□□□□□ -0.31
CIITA-208ENST00000572665 USP35Q9P2H5 1018 aa13.14□□□□□ -0.31
CIITA-208ENST00000572665 DISP2A7MBM2 1401 aa13.13□□□□□ -0.31
CIITA-208ENST00000572665 USP6P35125 1406 aa13.13□□□□□ -0.31
CIITA-208ENST00000572665 LRP5O75197 1615 aa13.13□□□□□ -0.31
CIITA-208ENST00000572665 LMO7Q8WWI1 1683 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms